optical techniques

光学技术
  • 文章类型: Journal Article
    光学测量与病理之间的准确关联依赖于精确的图像配准,经常被组织学图像中的变形所阻碍。我们研究了一种使用深度学习将乳腺标本图像与相应组织学图像对齐的自动多模态图像配准方法。
    我们旨在探索基于深度学习原理的自动图像配准技术的有效性,该技术用于将乳腺标本图像与通过不同模态获取的组织学图像对齐,解决强度变化和结构差异带来的挑战。
    无监督和有监督学习方法,采用VoxelMorph模型,使用以手动注册图像为地面实况的数据集进行检查。
    评估指标,包括骰子得分和互信息,证明了无监督模型显著超过了监督(和手动)方法,实现卓越的图像对齐。研究结果强调了自动配准通过减少与手动配准过程相关的人为错误来增强光学技术验证的功效。
    这种自动配准技术通过最大限度地减少人为错误和与手动图像配准过程相关的不一致,为增强光学技术的验证提供了有希望的潜力,从而提高了将光学测量与病理标签相关联的准确性。
    UNASSIGNED: The accurate correlation between optical measurements and pathology relies on precise image registration, often hindered by deformations in histology images. We investigate an automated multi-modal image registration method using deep learning to align breast specimen images with corresponding histology images.
    UNASSIGNED: We aim to explore the effectiveness of an automated image registration technique based on deep learning principles for aligning breast specimen images with histology images acquired through different modalities, addressing challenges posed by intensity variations and structural differences.
    UNASSIGNED: Unsupervised and supervised learning approaches, employing the VoxelMorph model, were examined using a dataset featuring manually registered images as ground truth.
    UNASSIGNED: Evaluation metrics, including Dice scores and mutual information, demonstrate that the unsupervised model exceeds the supervised (and manual) approaches significantly, achieving superior image alignment. The findings highlight the efficacy of automated registration in enhancing the validation of optical technologies by reducing human errors associated with manual registration processes.
    UNASSIGNED: This automated registration technique offers promising potential to enhance the validation of optical technologies by minimizing human-induced errors and inconsistencies associated with manual image registration processes, thereby improving the accuracy of correlating optical measurements with pathology labels.
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  • 文章类型: Journal Article
    常规组织学,以及免疫组织化学或免疫荧光,能够以单细胞准确性研究组织炎症过程中的形态和表型变化。然而,虽然非常具体,这种技术需要多个耗时的步骤来应用外源标签,这可能导致与天然组织结构的形态偏差。与这些技术不同,中红外(中红外)显微光谱是一种无标记的光学成像方法,可以在不改变样品天然成分的情况下检索内源性生物分子对比度。然而,由于生物组织中水的强烈光学吸收,传统的中红外显微光谱法仅限于干燥的薄(5-10µm)组织制剂,因此,它还需要耗时的步骤-与传统成像技术相当。这里,作为迈向未加工组织的无标签分析组织学的一步,我们应用中红外光声显微镜(MiROM)通过振动激发来检索固有分子对比度,同时,以克服在厚(mm范围)组织中的常规中红外成像的水-组织不透明性。在这个概念验证研究中,我们展示了MiROM的快速应用,无标签,对切除的白色脂肪组织中炎症标志的非破坏性评估;即冠状结构的形成和脂肪细胞形态的变化。
    Conventional histology, as well as immunohistochemistry or immunofluorescence, enables the study of morphological and phenotypical changes during tissue inflammation with single-cell accuracy. However, although highly specific, such techniques require multiple time-consuming steps to apply exogenous labels, which might result in morphological deviations from native tissue structures. Unlike these techniques, mid-infrared (mid-IR) microspectroscopy is a label-free optical imaging method that retrieves endogenous biomolecular contrast without altering the native composition of the samples. Nevertheless, due to the strong optical absorption of water in biological tissues, conventional mid-IR microspectroscopy has been limited to dried thin (5-10 µm) tissue preparations and, thus, it also requires time-consuming steps-comparable to conventional imaging techniques. Here, as a step towards label-free analytical histology of unprocessed tissues, we applied mid-IR optoacoustic microscopy (MiROM) to retrieve intrinsic molecular contrast by vibrational excitation and, simultaneously, to overcome water-tissue opacity of conventional mid-IR imaging in thick (mm range) tissues. In this proof-of-concept study, we demonstrated application of MiROM for the fast, label-free, non-destructive assessment of the hallmarks of inflammation in excised white adipose tissue; i.e., formation of crown-like structures and changes in adipocyte morphology.
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  • 文章类型: Journal Article
    自十年以来,许多光学技术已用于各种诊断和生物医学应用,偏振成像是一种非侵入性和无标记的光学技术,用于研究生物样品,使其成为诊断中的重要工具。生物医学应用。我们报告了通过使用具有宽带光源的偏振显微镜系统对口腔组织进行的基于多光谱偏振的成像。在口腔组织样品上进行实验,并且通过记录一组强度图像来进行多光谱斯托克斯映射。基于偏振的参数,如极化程度,快轴的角度,已经恢复了延迟和线性双折射。这些偏振分量的统计矩也已经在多个波长处被报道。已分析了癌症不同阶段的口腔组织的极化特性,并且在线性双折射量化中观察到从正常到癌前病变到癌变的显着变化为(1.7±0.1)×10-3,分别为(2.5±0.2)×10-3和(3.3±0.2)×10-3。本文受版权保护。保留所有权利。
    Many optical techniques have been used in various diagnostics and biomedical applications since a decade and polarization imaging is one of the non-invasive and label free optical technique to investigate biological samples making it an important tool in diagnostics, biomedical applications. We report a multispectral polarization-based imaging of oral tissue by utilizing a polarization microscope system with a broadband-light source. Experiments were performed on oral tissue samples and multispectral Stokes mapping was done by recording a set of intensity images. Polarization-based parameters like degree of polarization, angle of fast axis, retardation and linear birefringence have been retrieved. The statistical moments of these polarization components have also been reported at multiples wavelengths. The polarimetric properties of oral tissue at different stages of cancer have been analyzed and significant changes from normal to pre-cancerous lesions to the cancerous are observed in linear birefringence quantification as (1.7 ± 0.1) × 10-3 , (2.5 ± 0.2) × 10-3 and (3.3 ± 0.2) × 10-3 respectively.
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  • 文章类型: Journal Article
    新技术正在彻底改变单细胞研究,使我们能够以前所未有的规模和无与伦比的深度研究微生物。这篇综述重点介绍了微生物生态学应用中单细胞分析的最新技术,特别注意这两种光学工具,即,专门使用流式细胞术和拉曼光谱以及新兴的电气技术。这篇综述的目的包括展示单细胞光学方法研究微生物现象的多样性,强调在理解微生物系统方面的成功应用,讨论新兴技术,并鼓励结合既定和新颖的方法来解决研究问题。该综述旨在回答关键问题,例如单细胞方法如何提高我们对个体和相互作用细胞的理解,它们是如何被用来研究未培养的微生物的,哪些新的分析工具将会普及,以及它们如何为我们的生态互动知识做出贡献。
    New techniques are revolutionizing single-cell research, allowing us to study microbes at unprecedented scales and in unparalleled depth. This review highlights the state-of-the-art technologies in single-cell analysis in microbial ecology applications, with particular attention to both optical tools, i.e., specialized use of flow cytometry and Raman spectroscopy and emerging electrical techniques. The objectives of this review include showcasing the diversity of single-cell optical approaches for studying microbiological phenomena, highlighting successful applications in understanding microbial systems, discussing emerging techniques, and encouraging the combination of established and novel approaches to address research questions. The review aims to answer key questions such as how single-cell approaches have advanced our understanding of individual and interacting cells, how they have been used to study uncultured microbes, which new analysis tools will become widespread, and how they contribute to our knowledge of ecological interactions.
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  • 文章类型: Journal Article
    质地是促使消费者接受任何食品材料的重要感官属性。近年来,消费者对高质量食品的需求促使食品工业为食品提供一致的质地特性。然而,纹理测量不仅需要训练有素的感官小组,还需要相当多的时间和精力。另一方面,人类观察可能是主观的,因此结果的可重复性可能无法确保和/或依赖。与此相反,纹理测量的客观方法是可靠和一致的,但不适合在线应用,也具有破坏性。上述危机使行业选择了无损纹理分析技术。在过去的十年里,对微观变形等无损纹理分析方法进行了大量研究,以及声学和光学技术,显示在线应用的可行性。当前的评论着重于食品质地分析的无损技术的工作原理和最新应用。此外,本手稿详细介绍了接触式和非接触式纹理测量。文献调查总结了无损纹理分析技术商业化所涉及的未来研究方面和挑战。本文受版权保护。保留所有权利。
    Texture is an important sensory attribute that drives consumer acceptance of any food material. In recent times consumers\' demand for high-quality food urges food industries to provide food with consistent textural properties. However, texture measurement not just requires a trained sensory panel but also a considerable amount of time and effort. On the flip side, human observation could be subjective hence repeatability of the result may not be ensured and/or relied on. Contrary to that, objective methods for texture measurement are reliable and consistent, but are not suitable for in-line application and also destructive in nature. The mentioned crisis has made industries opt for nondestructive texture analysis techniques. In the past decade, considerable research has been carried out on nondestructive texture analysis methods such as micro-deformation, and acoustic and optical techniques, showing feasibility for in-line applications. The current review focuses on the working principles and most recent applications of nondestructive techniques for texture analysis of food products. Moreover, a detailed review of contact and noncontact-type texture measurement has been presented in this article. The literature survey is concluded with future research aspects and challenges involved in the commercialization of the nondestructive texture analysis techniques.
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  • 文章类型: Journal Article
    UNASSIGNED:良性外部脑积水(BEH)被认为是一种具有良好预后的自限性病理。然而,一些儿童出现病理性颅内压(ICP),其特征是定量和定性改变(所谓的B波),可导致神经系统后遗症.
    UNASSIGNED:我们的目的是评估是否存在与ICPB波相关的脑血流动力学变化,可以通过无创神经监测进行评估。
    未经评估:我们招募了11名患者(中位年龄16个月,范围为7至55个月),有BEH和需要ICP监测的不利演变。床边,使用与临床监测同步的近红外时间分辨和弥散相关光谱学进行夜间监测.
    UNASSIGNED:通过关注临床医生手动识别的不同ICP模式的时间,我们在常规和高振幅B波模式之间检测到显著的组织氧饱和度(StO2)变化(p=0.002)和血流指数(BFI)变异性(p=0.005).在BFI时间轨迹中寻找ICP模式类似物的盲法分析在识别B波中实现了90%的灵敏度,在检测规则模式中实现了76%的特异性。
    UNASSIGNED:我们揭示了在BEH儿童的ICPB波中存在StO2和BFI变异-用光学技术可检测。最后,显示了在非侵入性获得的血流动力学时间迹线中检测ICPB波的可行性.
    UNASSIGNED: Benign external hydrocephalus (BEH) is considered a self-limiting pathology with a good prognosis. However, some children present a pathological intracranial pressure (ICP) characterized by quantitative and qualitative alterations (the so-called B-waves) that can lead to neurological sequelae.
    UNASSIGNED: Our purpose was to evaluate whether there were cerebral hemodynamic changes associated with ICP B-waves that could be evaluated with noninvasive neuromonitoring.
    UNASSIGNED: We recruited eleven patients (median age 16 months, range 7 to 55 months) with BEH and an unfavorable evolution requiring ICP monitoring. Bedside, nocturnal monitoring using near-infrared time-resolved and diffuse correlation spectroscopies synchronized to the clinical monitoring was performed.
    UNASSIGNED: By focusing on the timing of different ICP patterns that were identified manually by clinicians, we detected significant tissue oxygen saturation ( StO 2 ) changes ( p = 0.002 ) and blood flow index (BFI) variability ( p = 0.005 ) between regular and high-amplitude B-wave patterns. A blinded analysis looking for analogs of ICP patterns in BFI time traces achieved 90% sensitivity in identifying B-waves and 76% specificity in detecting the regular patterns.
    UNASSIGNED: We revealed the presence of StO 2 and BFI variations-detectable with optical techniques-during ICP B-waves in BEH children. Finally, the feasibility of detecting ICP B-waves in hemodynamic time traces obtained noninvasively was shown.
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  • 文章类型: Journal Article
    使用光学系统检测生物制剂是一个开放的研究领域。目前,不同的光谱技术允许检测和分类化学试剂,而能够识别生物制剂的快速和准确的技术仍在研究中。一些光学技术,如激光诱导击穿光谱(LIBS)或激光诱导荧光(LIF),已经被用作分类方法。然而,背景的存在,频谱相似性和其他混杂因素使这些技术不是很具体。这项工作展示了一种在分类和浓度评估方面实现更好性能的新方法。该方法基于加权最小二乘最小化方法。事实上,通过使用临时权重,LSM查看光谱的特定特征,导致更高的准确性。为了进行系统的分析,进行了数值试验。有了这些测试,作者能够强调提出的新方法的各种优点和缺点。然后,将该方法应用于一些LIF测量,以研究该方法对初步实验案例的适用性。结果表明,通过使用这个新的加权LSM,有可能实现更好的分类和浓度评价性能。最后,讨论了新方法的可能应用。
    The detection of biological agents using optical systems is an open field of research. Currently, different spectroscopic techniques allow to detect and classify chemical agents while a fast and accurate technique able to identify biological agents is still under investigation. Some optical techniques, such as Laser-Induced Breakdown Spectroscopy (LIBS) or Laser-Induced Fluorescence (LIF), are already used as classification methods. However, the presence of background, spectrum similarities and other confounders make these techniques not very specific. This work shows a new method to achieve better performances in terms of classification and concentration evaluations. The method is based on the Weighted Least Square Minimization method. In fact, by using ad hoc weights, the LSM looks at specific features of the spectra, resulting in higher accuracy. In order to make a systematic analysis, numerical tests have been conducted. With these tests, the authors were able to highlight the various advantages and drawbacks of the new methodology proposed. Then, the method was applied to some LIF measurements to investigate the applicability of the method to preliminary experimental cases. The results show that, by using this new weighted LSM, it is possible to achieve better classification and concentration evaluation performances. Finally, the possible application of the new method is discussed.
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  • 文章类型: Journal Article
    在过去的十年中,纳米技术和相应行业的发展给分析科学带来了新的挑战。这包括在各种介质中对不同来源的纳米颗粒和其他纳米材料进行超灵敏的检测和表征,包括像食物一样复杂的食物,生物或环境样本。这篇综述的目的是对可能的方法进行系统分析,并描述这些方法背后的物理原理。主要关注的是光学方法,作者认为这些方法对制定的任务最有效。讨论了用于检测和分析体积中的纳米颗粒以及吸附在表面上的纳米颗粒的不同方法。虽然基于纳米粒子悬浮液直接分析的技术属于已建立的方法,其发展潜力已在很大程度上耗尽,基于吸附纳米粒子表面传感的新技术得到了深入的发展。因此,综述的最后一部分集中在宽场表面等离子体共振显微镜上。它允许在复杂介质中对不同来源的单个纳米颗粒进行超灵敏的检测和表征,并使用与其他分析技术的连字符对检测到的颗粒进行后续化学鉴定提供了许多可能性。
    Development of nanotechnology and corresponding industries during the last decade resulted in a new challenge for analytical science. This includes an ultrasensitive detection and characterization of nanoparticles of different origin and other nanomaterials in various media, including so complex ones as food, biological or environmental samples. The goal of this review is a systematic analysis of possible approaches and description of physical principles behind these methods. The main attention is paid to optical methods which are considered by authors to be mostly effective for the formulated task. Different approaches for detection and analysis of nanoparticles in a volume as well as of those adsorbed on a surface are discussed. While the technologies based on direct analysis of nanoparticle suspensions belong to the established approaches whose development potential has been in large extent exhausted, the novel technologies based on the surface sensing of adsorbed nanoparticles demonstrate intensive development. Therefore, the final part of the review is focused on the wide-field surface plasmon resonance microscopy. It allows one an ultrasensitive detection and characterization of individual nanoparticles of different origin in complex media and provides numerous possibilities for subsequent chemical identification of the detected particles using a hyphenation with other analytical technologies.
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  • 文章类型: Journal Article
    纵观历史,今天,有许多杰出的女性,她们的成就继续给我们留下深刻印象和惊喜。例如,在科学领域,居里夫人是第一位女性诺贝尔奖获得者,也是唯一在两个科学领域获得诺贝尔奖的人。来自中国,屠友是诺贝尔奖获得者,他发现了青蒿素和双氢青蒿素,用于治疗疟疾,二十世纪热带医学的突破,拯救了全球数百万人的生命.像安吉拉·阿伦茨这样的女商人,帮助振兴苹果的前时尚主管,Inc.,还有SherylSandberg,元平台首席运营官(前身为Facebook),被公认为世界上最具影响力的两位商业领袖。现在,比以往任何时候都多,女性处于光学和光子学研究和商业发展的前沿。其中一位领导人是伊丽莎白·罗根,光学首席执行官(前身为光学学会和美国光学学会。)作为负责一个致力于促进一代的组织的执行官,应用程序,存档,以及在全球范围内传播光学和光子学知识,罗根女士成功地拓展了光学技术和全球影响力的深度和广度。她的教育和专长是工业界的,金融,和战略。她利用这些技能在伙伴关系与博士志愿者和工作人员专家的大型和技术多样化的组。将这些有才华的人的努力与目标的统一相结合,对于Rogan和她领导近二十年的协会来说,已被证明是一种非常有效的方法。罗根女士是女性的坚定倡导者。例如,该协会的“光学面孔”运动以广泛的研究和应用成就女性为特色。她是“科学玫瑰”的热情参与者,“这庆祝了女科学家的非凡成就。光特别记者采访了伊丽莎白·罗根关于光学的遗产,文化,以及作为这个问题的首席执行官的个人经历。她还讨论了该组织最近更名背后的原因以及长春光学研究所的友谊纽带,精细力学与物理,中国科学院,和光学已经建立了多年。请和我们一起深入了解为什么这个有着百年历史的组织对未来有新的愿景。
    Throughout history, there have been many outstanding women whose achievements continue to impress and amaze us today. For example, in the field of science, Madame Marie Curie was the first woman Nobel Prize winner and the only person to be awarded a Nobel Prize in two scientific fields. From China, Tu Youyou is a Nobel laureate who discovered artemisinin and dihydroartemisinin, used to treat malaria, a breakthrough in twentieth-century tropical medicine, saving millions of lives around the globe. Businesswomen such as Angela Ahrendts, a former fashion executive who helped revitalize Apple, Inc., and Sheryl Sandberg, Chief Operating Officer of Meta Platforms (formerly Facebook), are recognized as two of the world\'s most influential business leaders. Now, more than ever, women are at the forefront of developments in optics and photonics research and business. One of those leaders is Elizabeth Rogan, CEO of Optica (formerly the Optical Society and the Optical Society of America.) As the executive in charge of an organization devoted to promoting the generation, application, archiving, and dissemination of knowledge in optics and photonics worldwide, Ms. Rogan has successfully expanded the depth and breadth of Optica\'s technical and global reach. Her education and expertise are in industry, finance, and strategy. She utilizes these skills in partnership with a large and technically diverse group of Ph.D. volunteers and staff specialists. Combining the efforts of these many talented people with a unity of purpose has proven to be a highly effective approach for Rogan and the association she has led for nearly two decades. Ms. Rogan is a strong advocate for women. For instance, the association\'s \"Faces of Optica\" campaign features a wide range of accomplished women in research and applications. And she was an enthusiastic participant in the \"Rose in Science,\" which celebrates the extraordinary accomplishments of women scientists. Light Special Correspondents interviewed Elizabeth Rogan about Optica\'s legacy, culture, and personal experiences as its CEO in this issue. She also discussed the reasons behind the recent rebranding of the organization and the bonds of friendship the Changchun Institute of Optics, Fine Mechanics and Physics, Chinese Academy of Sciences, and Optica have built over the years. Please join us for an in-depth look at why this century-plus-year-old organization has a fresh new vision for the future.
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  • 文章类型: Journal Article
    In the forensic investigation of questioned documents, it is often very important to know the deposition order of ink traces from two different writing tools at their intersection on a paper. In the present work, intersections of inks from several writing tools were studied using optical techniques that are standardly applied for questioned documents examination in a forensic laboratory, and an accelerator-based Ion Beam Analysis (IBA) technique called Secondary Ion Mass Spectrometry using MeV ions (MeV SIMS) that is applied in an accelerator facility. MeV SIMS provides molecular information about the studied inks from writing tools, which is an added value and can be also applied for determination of deposition order but was so far relatively rarely used in forensic studies. Aim of this paper is to compare performance of optical techniques and MeV SIMS for several combinations of intersecting lines. Cases were divided into those in which optical techniques can distinguish used inks and those which are optically completely indistinguishable. In the latter cases, we show that although mass spectra of used inks (from blue ballpoint pens) had extremely small differences, these in combination with advanced and most importantly objective multivariate algorithms could be very beneficial in resolving the deposition order at the intersection of optically indistinguishable inks. In general, MeV SIMS proved to be more efficient for oil-based inks while difficulties were encountered with water-based ones, similar to optical methods.
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