non-coding RNA (ncRNA)

非编码 RNA (ncRNA)
  • 文章类型: Journal Article
    N6-甲基腺苷(m6A)是真核RNA中最常见的内部修饰之一。转录本上m6A的存在可以影响一系列基本的细胞过程,包括mRNA剪接,核运输,稳定性,和翻译。m6A修饰是由m6A甲基转移酶(writer)引入的,被去甲基酶(橡皮擦)移除,并被m6A结合蛋白(阅读器)识别。目前的研究表明,m6A甲基化通过控制癌症相关基因的表达参与肿瘤恶性表型的调节。非编码RNA(ncRNA)是一组不编码蛋白质的RNA分子,广泛存在于人类基因组中。该组包括microRNAs(miRNAs),长链非编码RNA(lncRNA),环状RNA(circularRNAs),和PIWI相互作用RNA(piRNA)。它们通过各种机制充当癌基因或肿瘤抑制因子,调节癌症的发生和进展。以前对m6A的研究主要集中在编码RNA上,但是最近的发现揭示了m6A在ncRNAs中的重要调节作用。同时,ncRNAs还通过调节稳定性发挥其影响,拼接,翻译,和m6A相关酶的其他生物过程。m6A和ncRNAs之间的相互作用共同促进了人类恶性肿瘤的发生和发展。本文综述了m6A调控因子与ncRNAs之间的相互作用及其对肿瘤的影响。
    N6-methyladenosine (m6A) is one of the most common internal modifications in eukaryotic RNA. The presence of m6A on transcripts can affect a series of fundamental cellular processes, including mRNA splicing, nuclear transportation, stability, and translation. The m6A modification is introduced by m6A methyltransferases (writers), removed by demethylases (erasers), and recognized by m6A-binding proteins (readers). Current research has demonstrated that m6A methylation is involved in the regulation of malignant phenotypes in tumors by controlling the expression of cancer-related genes. Non-coding RNAs (ncRNAs) are a diverse group of RNA molecules that do not encode proteins and are widely present in the human genome. This group includes microRNAs (miRNAs), long non-coding RNAs (lncRNAs), circular RNAs (circRNAs), and PIWI interaction RNAs (piRNAs). They function as oncogenes or tumor suppressors through various mechanisms, regulating the initiation and progression of cancer. Previous studies on m6A primarily focused on coding RNAs, but recent discoveries have revealed the significant regulatory role of m6A in ncRNAs. Simultaneously, ncRNAs also exert their influence by modulating the stability, splicing, translation, and other biological processes of m6A-related enzymes. The interplay between m6A and ncRNAs collectively contributes to the occurrence and progression of malignant tumors in humans. This review provides an overview of the interactions between m6A regulatory factors and ncRNAs and their impact on tumors.
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  • 文章类型: Journal Article
    这篇综述全面研究了小的非编码RNA(sncRNA)和胰腺导管腺癌(PDAC)之间的复杂相互作用。治疗选择有限的破坏性恶性肿瘤。我们的分析揭示了sncRNAs在PDAC生物学各个方面的关键作用,跨越诊断,发病机制,耐药性,和治疗策略。sncRNAs已经成为PDAC的有希望的生物标志物,在患病组织中表现出不同的表达谱。sncRNA差异表达模式,通常可在体液中检测到,保持早期和微创诊断方法的潜力。此外,sncRNAs在PDAC发病机制中表现出复杂的参与,调节关键的细胞过程,如增殖,凋亡,和转移。此外,对sncRNA介导的致病途径的机制见解阐明了新的治疗靶标和干预措施。这篇综述的一个重要焦点是致力于揭示PDAC中潜在的耐药性sncRNA机制。在分子水平上了解这些机制对于设计克服耐药性的策略至关重要。探索治疗前景,我们讨论了sncRNAs本身作为治疗剂的潜力,因为它们以高特异性调节基因表达的能力使它们成为靶向治疗的有吸引力的候选者.总之,这篇综述整合了PDAC中sncRNAs的最新知识,对他们的诊断提供一个整体的视角,致病性,和治疗相关性。通过阐明sncRNAs在PDAC生物学中的作用,这篇综述为开发新的诊断工具和靶向治疗方法提供了有价值的见解,对于改善PDAC患者的预后至关重要。
    This review comprehensively investigates the intricate interplay between small non-coding RNAs (sncRNAs) and pancreatic ductal adenocarcinoma (PDAC), a devastating malignancy with limited therapeutic options. Our analysis reveals the pivotal roles of sncRNAs in various facets of PDAC biology, spanning diagnosis, pathogenesis, drug resistance, and therapeutic strategies. sncRNAs have emerged as promising biomarkers for PDAC, demonstrating distinct expression profiles in diseased tissues. sncRNA differential expression patterns, often detectable in bodily fluids, hold potential for early and minimally invasive diagnostic approaches. Furthermore, sncRNAs exhibit intricate involvement in PDAC pathogenesis, regulating critical cellular processes such as proliferation, apoptosis, and metastasis. Additionally, mechanistic insights into sncRNA-mediated pathogenic pathways illuminate novel therapeutic targets and interventions. A significant focus of this review is dedicated to unraveling sncRNA mechanisms underlying drug resistance in PDAC. Understanding these mechanisms at the molecular level is imperative for devising strategies to overcome drug resistance. Exploring the therapeutic landscape, we discuss the potential of sncRNAs as therapeutic agents themselves as their ability to modulate gene expression with high specificity renders them attractive candidates for targeted therapy. In summary, this review integrates current knowledge on sncRNAs in PDAC, offering a holistic perspective on their diagnostic, pathogenic, and therapeutic relevance. By elucidating the roles of sncRNAs in PDAC biology, this review provides valuable insights for the development of novel diagnostic tools and targeted therapeutic approaches, crucial for improving the prognosis of PDAC patients.
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  • 文章类型: Journal Article
    尽管治疗方案取得了进展,心血管疾病(CVDs)仍然是世界上主要的死亡原因。慢性炎症反应和不可逆纤维化是CVD进展的主要潜在病理生理原因。近几十年来,在这些复杂的病理生理条件的发展中,心脏巨噬细胞已被认为是主要的调节参与者。已经设计了许多针对巨噬细胞的方法,导致治疗干预的新前景。我们的综述涵盖了针对各种病理状况的以巨噬细胞为中心的治疗计划的进展,并研究了在心脏病中采用巨噬细胞靶向技术的潜在后果和障碍。
    Despite the advances in treatment options, cardiovascular disease (CVDs) remains the leading cause of death over the world. Chronic inflammatory response and irreversible fibrosis are the main underlying pathophysiological causes of progression of CVDs. In recent decades, cardiac macrophages have been recognized as main regulatory players in the development of these complex pathophysiological conditions. Numerous approaches aimed at macrophages have been devised, leading to novel prospects for therapeutic interventions. Our review covers the advancements in macrophage-centric treatment plans for various pathologic conditions and examines the potential consequences and obstacles of employing macrophage-targeted techniques in cardiac diseases.
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  • 文章类型: Journal Article
    这篇综合综述对原口症和子宫口症的早期胚胎发生进行了比较分析,其中第一个展示了马赛克的发展模式,细胞是确定性的,而氘口症表现出一种调节的发育模式,细胞的命运是不确定的。尽管存在这些根本性的差异,有共同的转录机制强调了它们的进化联系,特别是在功能基因组学领域。通过阐明保守和独特的监管策略,这篇综述提供了对这些群体的比较胚胎学和发育动力学的基本见解。这篇综述的目的是阐明转录调控机制的共同和独特特征。这将有助于功能基因组学的广泛领域,进化生物学和发育生物学,并可能为未来对这一开创性主题的研究和讨论奠定基础。
    This comprehensive review presents a comparative analysis of early embryogenesis in Protostomia and Deuterostomia, the first of which exhibit a mosaic pattern of development, where cells are fated deterministically, while Deuterostomia display a regulatory pattern of development, where the fate of cells is indeterminate. Despite these fundamental differences, there are common transcriptional mechanisms that underline their evolutionary linkages, particularly in the field of functional genomics. By elucidating both conserved and unique regulatory strategies, this review provides essential insights into the comparative embryology and developmental dynamics of these groups. The objective of this review is to clarify the shared and distinctive characteristics of transcriptional regulatory mechanisms. This will contribute to the extensive areas of functional genomics, evolutionary biology and developmental biology, and possibly lay the foundation for future research and discussion on this seminal topic.
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  • 文章类型: Journal Article
    肺动脉高压(PAH)是一种严重的进行性疾病,可能导致早期右心室衰竭和最终的心力衰竭。PAH的发病机制涉及内皮功能障碍,肺动脉平滑肌细胞(PASMC)的异常增殖,和血管纤维化。缺氧已被证明可诱导血管内皮生长因子(VEGF)的分泌升高,导致低氧PAH的发展。然而,低氧性PAH的分子机制尚不完全清楚.细胞程序性死亡(PCD)是一种自然的细胞死亡,受某些基因调控。新出现的证据表明,凋亡抗性有助于PAH的发展。此外,几种新型PCD,比如自噬,焦亡,和铁性凋亡,据报道参与了PAH的发展。此外,多种表观遗传机制,包括RNA甲基化,DNA甲基化,组蛋白修饰,非编码RNA分子介导的过程与PAH的发展密切相关。这些表观遗传修饰影响基因的表达,在细胞生物过程中产生重要的变化,包括PCD。因此,更好地理解PCD过程和表观遗传修饰参与PAH将提供新的,诊断和治疗的具体治疗策略。在这次审查中,我们旨在讨论表观遗传机制的最新进展,并阐明表观遗传修饰在低氧诱导的PAH中调节PCD的作用。
    Pulmonary arterial hypertension (PAH) is a severe progressive disease that may cause early right ventricular failure and eventual cardiac failure. The pathogenesis of PAH involves endothelial dysfunction, aberrant proliferation of pulmonary artery smooth muscle cells (PASMCs), and vascular fibrosis. Hypoxia has been shown to induce elevated secretion of vascular endothelial growth factor (VEGF), leading to the development of hypoxic PAH. However, the molecular mechanisms underlying hypoxic PAH remain incompletely understood. Programmed cell death (PCD) is a natural cell death and regulated by certain genes. Emerging evidence suggests that apoptotic resistance contributes to the development of PAH. Moreover, several novel types of PCD, such as autophagy, pyroptosis, and ferroptosis, have been reported to be involved in the development of PAH. Additionally, multiple diverse epigenetic mechanisms including RNA methylation, DNA methylation, histone modification, and the non-coding RNA molecule-mediated processes have been strongly linked to the development of PAH. These epigenetic modifications affect the expression of genes, which produce important changes in cellular biological processes, including PCD. Consequently, a better understanding of the PCD processes and epigenetic modification involved in PAH will provide novel, specific therapeutic strategies for diagnosis and treatment. In this review, we aim to discuss recent advances in epigenetic mechanisms and elucidate the role of epigenetic modifications in regulating PCD in hypoxia-induced PAH.
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  • 文章类型: Journal Article
    背景:衰老的脂肪来源的干细胞(ASC)在伤口愈合期间表现出降低的治疗功效。转录调节因子,包括长链非编码RNA(lncRNAs),据报道在干细胞衰老中具有重要作用。然而,lncRNAs影响间充质干细胞衰老的机制及其作用方式需要进一步研究.
    方法:通过定量聚合酶链反应检测从老年和年轻志愿者供体获得的ASCs中lncRNA衰老相关非编码RNA(SAN)和miR-143-3p的表达模式。通过慢病毒转导构建了具有SAN和γ-内收蛋白(ADD3)过表达或敲低的ASCs。模拟物和抑制剂用于操纵ASC中miR-143-3p的细胞水平。这些RNA对ASCs增殖的影响,迁移和细胞衰老由EdU检查,transwell和衰老激活的β-半乳糖苷酶(SA-β-gal)染色测定。进行伤口划痕和管形成测定以评估ASC促进成纤维细胞迁移和内皮细胞血管生成的能力。此外,进行双荧光素酶测定和拯救实验以鉴定RNA相互作用。最后,在皮肤损伤模型中评估了SAN耗尽的老年ASCs的治疗效果.
    结果:lncRNASAN(NONHSAT035482.2)在老年ASCs中上调;它控制了ASCs中的细胞衰老。ASCs中的lncRNASAN敲低导致ASC功能增强和细胞衰老的抑制;它还促进了条件培养基(CM)对内皮细胞管形成和成纤维细胞迁移的影响。机制分析显示SAN作为miR-143-3p的海绵,从而调控ADD3的表达。应用SAN耗尽的老化ASCs增加了再上皮化,胶原蛋白沉积,新生血管形成并导致加速的皮肤伤口闭合,与老年ASCs移植比较。
    结论:lncRNASAN通过调节miR-143-3p/ADD3通路介导ASC衰老,为衰老的ASCs的再生和伤口修复的增强提供了潜在的目标。
    Senescent adipose-derived stem cells (ASCs) exhibit reduced therapeutic efficacy during wound healing. Transcriptional regulation factors including long noncoding RNAs (lncRNAs) reportedly have essential roles in stem cell aging. However, the mechanisms of which lncRNAs influence mesenchymal stem cell aging and how it works need further investigation.
    The expression patterns of lncRNA senescence-associated noncoding RNA (SAN) and miR-143-3p in ASCs obtained from old and young volunteer donors were detected by quantitative polymerase chain reaction. ASCs with overexpression or knockdown of SAN and γ-adducin (ADD3) were constructed by lentiviral transduction. Mimic and inhibitor were used to manipulate the cellular level of miR-143-3p in ASCs. The effects of these RNAs on ASCs proliferation, migration and cellular senescence were examined by EdU, transwell and senescence-activated β-galactosidase (SA-β-gal) staining assays. Wound scratch and tube formation assays were conducted to evaluate the capacities of ASCs in promoting fibroblasts migration and endothelial cells angiogenesis. Furthermore, dual-luciferase assays and rescue experiments were performed to identify the RNA interactions. Finally, the therapeutic effects of SAN-depleted aged ASCs were evaluated in a skin injury model.
    The lncRNA SAN (NONHSAT035482.2) was upregulated in aged ASCs; it controlled cellular senescence in ASCs. lncRNA SAN knockdown in ASCs led to ASC functional enhancement and the inhibition of cellular senescence; it also promoted the effects of conditioned medium (CM) on endothelial cell tube formation and fibroblast migration. Mechanistic analysis showed that SAN serves as a sponge for miR-143-3p, thereby regulating the expression of ADD3. The application of SAN-depleted aged ASCs increased re-epithelialization, collagen deposition, neovascularization and led to accelerated skin wound closure, compared with transplantation of aged ASCs.
    The lncRNA SAN mediates ASC senescence by regulating the miR-143-3p/ADD3 pathway, providing a potential target for rejuvenation of senescent ASCs and enhancement of wound repair.
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  • 文章类型: Journal Article
    Grave的眼病(GO)发病机制可能由表观遗传过程(如DNA甲基化修饰)帮助变得越来越明显,组蛋白尾共价修饰,和基于非编码RNA(ncRNA)的表观遗传过程。在本研究中,由于缺乏对这些非编码RNA及其在GO发病机制中的作用的研究,我们的目标是更多地关注miRNAs而不是lncRNAs。
    使用了六阶段方法框架和PRISMA建议来进行此范围审查。对七个数据库进行了全面搜索,以发现直到2022年2月发表的相关论文。数据单独提取,并进行了定量和定性分析。
    共发现20篇文章符合纳入标准。根据结果,ncRNA参与炎症的调节(miR-146a,LPAL2/miR-1287-5p轴,LINC01820:13/hsamiR-27b-3p轴,和ENST00000499452/hsa-miR-27a-3p轴),T细胞功能的调节(miR-146a/miR-183/miR-96),调节糖胺聚糖聚集和纤维化(miR-146a/miR-21),糖皮质激素敏感性(miR-224-5p),脂质积累和脂肪生成(miR-27a/miR-27b/miR-130a),氧化应激和血管生成(miR-199a),和眼眶成纤维细胞增殖(miR-21/miR-146a/miR-155)。还表明11种miRNA(miR-146a/miR-224-5p/miR-Let7d-5p/miR-96-5p/miR-301a-3p/miR-21-5p)具有用作生物标志物的能力。
    不管在GO中存在ncRNA介导的表观遗传功能障碍的重要文献,需要更多的研究来彻底理解疾病发病机制中有关的表观遗传联系,为在患者中进行表观遗传治疗的新型诊断和预后工具铺平了道路。
    UNASSIGNED: It is becoming more and more apparent that Grave\'s Ophthalmopathy (GO) pathogenesis may be aided by epigenetic processes such as DNA methylation modifications, histone tail covalent modifications, and non-coding RNA (ncRNA)-based epigenetic processes. In the present study, we aimed to focus more on the miRNAs rather than lncRNAs due to lack of investigations on these non-coding RNAs and their role in GO\'s pathogenesis.
    UNASSIGNED: A six-stage methodology framework and the PRISMA recommendation were used to conduct this scoping review. A comprehensive search was conducted across seven databases to discover relevant papers published until February 2022. The data extraction separately, and quantitative and qualitative analyses were conducted.
    UNASSIGNED: A total of 20 articles were found to meet inclusion criteria. According to the results, ncRNA were involved in the regulation of inflammation (miR-146a, LPAL2/miR-1287-5p axis, LINC01820:13/hsa miR-27b-3p axis, and ENST00000499452/hsa-miR-27a-3p axis), regulation of T cell functions (miR-146a/miR-183/miR-96), regulation of glycosaminoglycan aggregation and fibrosis (miR-146a/miR-21), glucocorticoid sensitivity (miR-224-5p), lipid accumulation and adipogenesis (miR-27a/miR-27b/miR-130a), oxidative stress and angiogenesis (miR-199a), and orbital fibroblast proliferation (miR-21/miR-146a/miR-155). Eleven miRNAs (miR-146a/miR-224-5p/miR-Let7d-5p/miR-96-5p/miR-301a-3p/miR-21-5p) were also indicated to have the capacity to be used as biomarkers.
    UNASSIGNED: Regardless of the fact that there is significant documentation of ncRNA-mediated epigenetic dysfunction in GO, additional study is needed to thoroughly comprehend the epigenetic connections concerned in disease pathogenesis, paving the way for novel diagnostic and prognostic tools for epigenetic therapies among the patients.
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  • 文章类型: Journal Article
    进行这项研究是为了说明这些与PE相关的ncRNA在母体循环中的起源及其向靶细胞中的潜在转运方法。我们选择了10名患有重度先兆子痫的妇女(PE组)和10名健康参与者作为对照(NC组)。从血清中分离外泌体,并通过特定标记确定其来源,胎盘碱性磷酸酶(PLAP)。我们比较了外泌体和全血清中与PE相关的ncRNA,以观察血清外泌体与滋养细胞的交换。结果表明,PLAP富集在分离的外泌体中。七个PE相关的ncRNAs,包括lnc-SNHG5,miR-26a-5p,miR-221-3p,miR-30a-3p,miR-18a,在来自两组的胎盘来源的外泌体和全血清中分析miR-152和miR-155。miR-26a-5p,与NC组相比,miR-152和miR-155在PE组中上调。152和miR-155上调。152和miR-155上调,miR-18a和miR-221-3p表达下调(P<0.05)。ncRNA在血清和胎盘来源的血清外泌体中以一致的趋势改变。荧光显微镜结果显示,在暴露于PKH26标记的外泌体的HTR-8细胞中,细胞核被复染。PE相关ncRNAs可以通过分泌和包封到胎盘来源的外泌体中进入母体循环,并通过靶向滋养层细胞参与PE的发育和进展。外泌体中ncRNAs的差异表达有可能被用作靶向治疗的预测因子,为改善母婴结局提供新的思路和观点。
    This study was conducted to illustrate the origin of these PE-related ncRNAs in maternal circulation and their underlying transport methods into target cells. We selected 10 women with severe pre-eclampsia (PE group) and 10 healthy participants who served as controls (NC group). Exosomes were isolated from their sera and their origin was determined by a specific marker, placental alkaline phosphatase (PLAP). We compared the ncrna associated with PE in exosomes and whole serum to observe the exchange of serum exosomes with trophoblast cells. The results showed that PLAP was enriched in the isolated exosomes. Seven PE-associated ncRNAs, including lnc-SNHG5, miR-26a-5p, miR-221-3p, miR-30a-3p, miR-18a, miR-152 and miR-155, were analyzed in placenta-derived exosomes and whole serum from both groups. miR-26a-5p, miR-152 and miR-155 were upregulated in the PE group compared with the NC group. 152 and miR-155 were upregulated. 152 and miR-155 were upregulated, while miR-18a and miR-221-3p were downregulated (P<0.05). ncRNAs were altered in serum and placenta-derived serum exosomes in a consistent trend. Fluorescence microscopy results showed that the nuclei were counterstained in HTR-8 cells exposed to PKH26-labeled exosomes. PE-associated ncRNAs can enter the maternal circulation through secretion and encapsulation into placenta-derived exosomes and participate in the development and progression of PE by targeting trophoblast cells. differential expression of ncRNAs in exosomes has the potential to be used as predictors for targeted therapy, providing new ideas and perspectives for improving maternal and infant outcomes.
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  • 文章类型: Editorial
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  • 文章类型: Journal Article
    甲基苯丙胺(METH)是一种苯丙胺类兴奋剂,对中枢神经系统(CNS)具有高度毒性。重复摄入METH会导致成瘾,这已经成为一个全球化的问题,导致多个公共卫生和安全问题。最近,非编码RNA(ncRNA)已被证明通过各种机制在METH成瘾中发挥重要作用。在这里,我们主要关注三种ncRNAs,包括长链非编码RNAs(lncRNAs),microRNAs(miRNAs),和环状RNAs(circRNAs),涉及神经毒性效应,如认知障碍,行为异常,和滥用METH引起的精神疾病。此外,差异表达(DE)ncRNAs还表明,对METH神经毒性的特异性反应和敏感性存在于不同的大脑区域和细胞中。我们总结了ncRNAs与METH诱导的神经毒性和精神障碍之间的关系,分别,希望为预防和治疗METH滥用提供新的视角和策略。非编码RNA(ncRNA)的示意图参与甲基苯丙胺(METH)诱导的神经毒性。ncRNAs参与METH诱导的血脑屏障破坏,神经元,星形胶质细胞,和小胶质细胞损伤,和突触神经传递障碍。ncRNAs的研究是今后进一步认识METH神经毒性的热点,为临床诊断和相关治疗方法的创新提供更有利的科学支持。
    Methamphetamine (METH) is an amphetamine-type stimulant that is highly toxic to the central nervous system (CNS). Repeated intake of METH can lead to addiction, which has become a globalized problem, resulting in multiple public health and safety problems. Recently, the non-coding RNA (ncRNA) has been certified to play an essential role in METH addiction through various mechanisms. Herein, we mainly focused on three kinds of ncRNAs including long non-coding RNAs (lncRNAs), microRNAs (miRNAs), and circular RNAs (circRNAs), which are involved in neurotoxicity effects such as cognitive impairment, behavioral abnormalities, and psychiatric disorders due to METH abuse. In addition, differential expression (DE) ncRNAs also suggest that specific responses and sensitivity to METH neurotoxicity exist in different brain regions and cells. We summarized the relationships between the ncRNAs and METH-induced neurotoxicity and psychiatric disturbances, respectively, hoping to provide new perspectives and strategies for the prevention and treatment of METH abuse. Schematic diagram of the non-coding RNAs (ncRNAs) was involved in methamphetamine (METH)-induced neurotoxicity. The ncRNAs were involved in METH-induced blood-brain barrier disruption, neuronal, astrocyte, and microglial damage, and synaptic neurotransmission impairment. The study of ncRNAs is a hot spot in the future to further understand the neurotoxicity of METH and provide more favorable scientific support for clinical diagnosis and innovation of related treatments.
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