interferon pathway

干扰素途径
  • 文章类型: Journal Article
    STAT1a是参与干扰素途径的必需信号转导蛋白,在IFN-α/β和γ信号中起着至关重要的作用。关于鱼类中STAT蛋白的信息有限,特别是在印度主要鲤鱼(IMC)。本研究旨在鉴定和表征Labeorohita中的STAT1a蛋白(LrSTAT1a)。
    对LrSTAT1a转录本的全长CDS进行鉴定和测序。基于核苷酸序列进行系统发育分析。体内免疫刺激剂聚I:C用于治疗各种组织,采用实时定量聚合酶链反应(qRT-PCR)检测LrSTAT1a的表达。使用数据库中可获得的紧密结构同系物生成STAT1a蛋白的3D模型,并使用分子动力学(MD)模拟进行检查。
    LabeorohitaSTAT1a(LrSTAT1a)转录本的全长CDS由3238bp组成,编码721个氨基酸序列的多肽。基于核苷酸序列进行系统发育分析。根据我们的发现,其他脊椎动物与STAT1a具有高度的保守性。此外,我们报道,通过定量实时聚合酶链反应(qRT-PCR)测定,体内免疫刺激剂polyI:C处理各种组织导致LrSTAT1a的表达。在目前的调查中,用polyI:C处理显著增加了LrSTAT1a在几乎每个器官和组织中的表达,用大脑,肌肉,肾,和肠显示与对照相比的最高表达水平。我们通过使用已经在数据库中获得的紧密结构同源物,制作了STAT1a蛋白的3D模型。然后使用分子动力学(MD)模拟检查模型。与以前的研究一致,MD研究强调了STAT1a蛋白的重要性,其负责Src同源性2(SH2)识别。成功地将SH2保留在STAT1a结合腔内的重要H键被确定为由保守残基SER107、GLN530、SER583、LYS584、MET103和ALA106形成。
    这项研究提供了对Rohu(Labeorohita)中STAT1a蛋白的分子见解,并强调了STAT1a在鱼类先天免疫反应中的潜在作用。在其他脊椎动物中,STAT1a的高度保守性表明其在免疫反应中的关键作用。体内免疫刺激结果表明,STAT1a参与各种组织的免疫反应,用大脑,肌肉,肾,肠道反应最灵敏。3D模型和MD研究为STAT1a在免疫应答中的意义提供了进一步的证据,特别是在SH2识别。进一步的研讨须要懂得IFN通路所触及的具体机制和STAT1a在IMC免疫反响中的感化。
    UNASSIGNED: STAT1a is an essential signal transduction protein involved in the interferon pathway, playing a vital role in IFN-alpha/beta and gamma signaling. Limited information is available about the STAT protein in fish, particularly in Indian major carps (IMC). This study aimed to identify and characterize the STAT1a protein in Labeo rohita (LrSTAT1a).
    UNASSIGNED: The full-length CDS of LrSTAT1a transcript was identified and sequenced. Phylogenetic analyses were performed based on the nucleotide sequences. The in-vivo immune stimulant poly I: C was used to treat various tissues, and the expression of LrSTAT1a was determined using quantitative real-time polymerase chain reaction (qRT-PCR). A 3D model of the STAT1a protein was generated using close structure homologs available in the database and checked using molecular dynamics (MD) simulations.
    UNASSIGNED: The full-length CDS of Labeo rohita STAT1a (LrSTAT1a) transcript consisted of 3238 bp that encoded a polypeptide of 721 amino acids sequence was identified. Phylogenetic analyses were performed based on the nucleotide sequences. Based on our findings, other vertebrates share a high degree of conservation with STAT1a. Additionally, we report that the in vivo immune stimulant poly I: C treatment of various tissues resulted in the expression of LrSTAT1a as determined by quantitative real-time polymerase chain reaction (qRT-PCR). In the current investigation, treatment with poly I: C dramatically increased the expression of LrSTAT1a in nearly every organ and tissue, with the brain, muscle, kidney, and intestine showing the highest levels of expression compared to the control. We made a 3D model of the STAT1a protein by using close structure homologs that were already available in the database. The model was then checked using molecular dynamics (MD) simulations. Consistent with previous research, the MD study highlighted the significance of the STAT1a protein, which is responsible for Src homology 2 (SH2) recognition. An important H-bonding that successfully retains SH2 inside the STAT1a binding cavity was determined to be formed by the conserved residues SER107, GLN530, SER583, LYS584, MET103, and ALA106.
    UNASSIGNED: This study provides molecular insights into the STAT1a protein in Rohu (Labeo rohita) and highlights the potential role of STAT1a in the innate immune response in fish. The high degree of conservation of STAT1a among other vertebrates suggests its crucial role in the immune response. The in-vivo immune stimulation results indicate that STAT1a is involved in the immune response in various tissues, with the brain, muscle, kidney, and intestine being the most responsive. The 3D model and MD study provide further evidence of the significance of STAT1a in the immune response, specifically in SH2 recognition. Further research is necessary to understand the specific mechanisms involved in the IFN pathway and the role of STAT1a in the immune response of IMC.
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  • 文章类型: Journal Article
    目的:星形胶质细胞通过获得以形态和功能变化为特征的反应状态来响应应激源。反应性星形胶质增生的潜在分子,然而,基本上是未知的。鉴于一些研究观察到淀粉样前体蛋白(APP)在反应性星形胶质细胞中增加,我们在这里测试APP是否在反应性星形胶质细胞增生中起作用。
    方法:我们通过在体外和体内检查幼稚和缺乏APP的星形胶质细胞对APP和既定应激源的反应的形态和功能,研究了APP是否会激发反应性星形胶质细胞。
    结果:APP在培养的星形胶质细胞中的过表达导致中间细丝网络的重塑,细胞因子产生的增强,以及以干扰素(IFN)途径为中心的细胞程序的激活,反应性星形胶质增生的所有迹象。相反,APP缺失消除了中间丝网络的重塑,并响应于脂多糖而抑制了IFN刺激的基因产物的表达。创伤性脑损伤(TBI)后,小鼠反应性星形胶质细胞也表现出APP和IFN之间的关联,APP缺失抑制了星形胶质细胞对TBI的反应中典型观察到的胶质纤维酸性蛋白的增加。
    结论:因此APP代表了反应性星形胶质细胞增生的候选分子诱导剂和调节剂。这一发现对于理解以反应性星形胶质增生为特征的神经退行性疾病和其他神经系统疾病的病理生理学具有重要意义,并开辟了针对APP及其调节反应性星形胶质增生的途径的潜在新的治疗途径。
    Astrocytes respond to stressors by acquiring a reactive state characterized by changes in their morphology and function. Molecules underlying reactive astrogliosis, however, remain largely unknown. Given that several studies observed increase in the Amyloid Precursor Protein (APP) in reactive astrocytes, we here test whether APP plays a role in reactive astrogliosis.
    We investigated whether APP instigates reactive astroglios by examining in vitro and in vivo the morphology and function of naive and APP-deficient astrocytes in response to APP and well-established stressors.
    Overexpression of APP in cultured astrocytes led to remodeling of the intermediate filament network, enhancement of cytokine production, and activation of cellular programs centered around the interferon (IFN) pathway, all signs of reactive astrogliosis. Conversely, APP deletion abrogated remodeling of the intermediate filament network and blunted expression of IFN-stimulated gene products in response to lipopolysaccharide. Following traumatic brain injury (TBI), mouse reactive astrocytes also exhibited an association between APP and IFN, while APP deletion curbed the increase in glial fibrillary acidic protein observed canonically in astrocytes in response to TBI.
    The APP thus represents a candidate molecular inducer and regulator of reactive astrogliosis. This finding has implications for understanding pathophysiology of neurodegenerative and other diseases of the nervous system characterized by reactive astrogliosis and opens potential new therapeutic avenues targeting APP and its pathways to modulate reactive astrogliosis.
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  • 文章类型: Preprint
    我们提供了体外和体内证据,证明淀粉样蛋白前体蛋白(APP)是反应性星形胶质细胞增生的重要煽动者。培养的星形胶质细胞中APP的细胞特异性过表达导致中间细丝网络的重塑,以干扰素(IFN)途径为中心的细胞因子产生和细胞程序激活的增强,反应性星形胶质增生的所有迹象。相反,培养的星形胶质细胞中的APP缺失消除了中间丝网络的重塑,并抑制了对脂多糖(LPS)的IFN刺激基因(ISG)产物的表达。创伤性脑损伤(TBI)后,小鼠反应性星形胶质细胞也表现出APP和IFN之间的关联,APP缺失抑制了星形胶质细胞对TBI的反应中典型观察到的胶质纤维酸性蛋白(GFAP)的增加。因此,APP代表反应性星形胶质细胞增生的分子诱导剂和调节剂。
    We present in vitro and in vivo evidence demonstrating that Amyloid Precursor Protein (APP) acts as an essential instigator of reactive astrogliosis. Cell-specific overexpression of APP in cultured astrocytes led to remodelling of the intermediate filament network, enhancement of cytokine production and activation of cellular programs centred around the interferon (IFN) pathway, all signs of reactive astrogliosis. Conversely, APP deletion in cultured astrocytes abrogated remodelling of the intermediate filament network and blunted expression of IFN stimulated gene (ISG) products in response to lipopolysaccharide (LPS). Following traumatic brain injury (TBI), mouse reactive astrocytes also exhibited an association between APP and IFN, while APP deletion curbed the increase in glial fibrillary acidic protein (GFAP) observed canonically in astrocytes in response to TBI. Thus, APP represents a molecular inducer and regulator of reactive astrogliosis.
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  • 文章类型: Journal Article
    虽然免疫系统在高血压的发展中起着至关重要的作用,不同免疫细胞群的具体贡献仍未完全了解.单细胞RNA测序(scRNA-seq)技术的出现使我们能够分析单个免疫细胞的转录组,并评估每种免疫细胞类型在高血压发展中的重要性。
    我们旨在研究B细胞在果糖诱导的高血压的发展中起关键作用的假设。
    将八周大的Dahl盐敏感(SS)雄性大鼠分为两组,并给予自来水(TW)或20%果糖溶液(HFS)4周。使用尾套法测量收缩压。对从经受TW或HFS的SS大鼠获得的固有层细胞(LP)和外周血单核细胞(PBMC)进行ScRNA-seq分析。HFS治疗可诱发SS大鼠高血压。分析显示LP中有27个簇,PBMC中有28个簇,允许识别和表征每个簇内的各种免疫细胞类型。具体来说,B细胞和滤泡辅助性T(Tfh)细胞在LPs中突出,而B细胞和M1巨噬细胞在HFS组中占主导地位。此外,HFS治疗引发了LPs和PBMC中B细胞数量的增加,伴随着干扰素途径的激活。
    B细胞在肠道和PBMC反应中的显著参与表明它们对高血压发展的关键贡献。这一发现表明,靶向B细胞可能是缓解果糖诱导的高血压的潜在策略。此外,LPs中滤泡B细胞和Tfh细胞的同时增加,随着B细胞中干扰素途径基因的上调,强调了一个潜在的自身免疫因素,有助于果糖诱导的肠道高血压的发病机理。
    While the immune system plays a crucial role in the development of hypertension, the specific contributions of distinct immune cell populations remain incompletely understood. The emergence of single-cell RNA-sequencing (scRNA-seq) technology enables us to analyze the transcriptomes of individual immune cells and to assess the significance of each immune cell type in hypertension development.
    We aimed to investigate the hypothesis that B cells play a crucial role in the development of fructose-induced hypertension.
    Eight-week-old Dahl salt-sensitive (SS) male rats were divided into two groups and given either tap water (TW) or a 20% fructose solution (HFS) for 4 weeks. Systolic blood pressure was measured using the tail-cuff method. ScRNA-seq analysis was performed on lamina propria cells (LPs) and peripheral blood mononuclear cells (PBMCs) obtained from SS rats subjected to either TW or HFS. The HFS treatment induced hypertension in the SS rats. The analysis revealed 27 clusters in LPs and 28 clusters in PBMCs, allowing for the identification and characterization of various immune cell types within each cluster. Specifically, B cells and follicular helper T (Tfh) cells were prominent in LPs, while B cells and M1 macrophages dominated PBMCs in the HFS group. Moreover, the HFS treatment triggered an increase in the number of B cells in both LPs and PBMCs, accompanied by activation of the interferon pathway.
    The significant involvement of B cells in intestinal and PBMC responses indicates their pivotal contribution to the development of hypertension. This finding suggests that targeting B cells could be a potential strategy to mitigate high blood pressure in fructose-induced hypertension. Moreover, the simultaneous increase in follicular B cells and Tfh cells in LPs, along with the upregulation of interferon pathway genes in B cells, underscores a potential autoimmune factor contributing to the pathogenesis of fructose-induced hypertension in the intestine.
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  • 文章类型: Journal Article
    自2019年底以来,SARS-CoV-2病毒开始在不同国家传播,导致了世界性的大流行,今天的感染人数超过6.9亿,病死率超过690万。此外,约有6500万患者在感染SARS-CoV-2病毒或其变体后患有后/长期Covid综合征。这篇综述强调了病毒的生物学,总结了我们对一些抵消免疫反应的病毒机制的知识,最后还讨论了不同的疫苗及其特定的安全性。此外,用最近可用的药物对抗这种病毒的可能性(Veklury,将讨论Lagevrio和Paxlovid)。所有这些数据清楚地表明,SARS-CoV-2变体仍然表现出危险的潜力-尽管病死率较低-并且在感染时接种疫苗与药物摄入相结合可能有助于降低患慢性或暂时性自身免疫性疾病的风险。
    Since the end of 2019, the SARS-CoV-2 virus started to spread in different countries, leading to a world-wide pandemia, with today\'s infection numbers of more than 690 million and with a case fatality rate of more than 6.9 million. In addition, about 65 million patients suffer from post/long-Covid syndromes after having infections with the SARS-CoV-2 virus or variants thereof. This review highlights the biology of the virus, summarizes our knowledge of some of the viral mechanisms that counteract our immune responses, and finally also discusses the different vaccines and their specific safety profiles. Also, the possibility to fight this virus with recently available drugs (Veklury, Lagevrio and Paxlovid) will be discussed. All these data clearly argue that SARS-CoV-2 variants still exhibit a dangerous potential-although with a lower case fatality rate-and that vaccination in combination with drug intake upon infection may help to lower the risk of developing chronic or temporary autoimmune diseases.
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  • 文章类型: Journal Article
    塞内卡谷病毒(SVV),小导航科的一员,可能导致妊娠母猪严重的水泡病和新生仔猪急性死亡,造成了生猪生产的经济损失。3C蛋白酶是SVV成熟的重要酶,能够调节病毒的蛋白质切割和RNA复制。此外,这种蛋白酶可以通过靶向干扰素途径的主要因子来阻止宿主的先天免疫反应,并通过调节宿主的RNA代谢来增强病毒复制,同时引发程序性细胞死亡。本文回顾了SVV3C功能的最新研究,其中包括病毒复制促进,细胞凋亡调节和宿主免疫应答逃避,为防治SVV感染的研究提供了理论依据。
    Seneca Valley virus (SVV), a member of the Picornaviridae family, may cause serious water blister diseases in pregnant sows and acute death in newborn piglets, which have resulted in economic losses in pig production. The 3C protease is a vital enzyme for SVV maturation and is capable of regulating protein cleavage and RNA replication of the virus. Additionally, this protease can impede the host\'s innate immune response by targeting the interferon pathway\'s principal factor and enhance virus replication by modulating the host\'s RNA metabolism while simultaneously triggering programmed cell death. This article reviews recent studies on SVV 3C functions, which include viral replication promotion, cell apoptosis modulation and host immune response evasion, and provides a theoretical basis for research on preventing and controlling SVV infection.
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  • 文章类型: Journal Article
    干扰素途径是所有哺乳动物病毒感染的第一道防线,其诱导刺激干扰素刺激基因(ISGs)的广泛表达。在老鼠和人类中,ISGs的抗病毒功能已被广泛研究。作为自然界中重要的病毒库,蝙蝠可以与多种致病病毒共存,没有明显的疾病迹象,然而,关于ISG在蝙蝠中的作用,只有有限的数据可用。蝙蝠有多种物种,并且已经开始研究人类/小鼠的ISG功能与不同蝙蝠物种之间的差异和相似性。这篇综述总结了保守和蝙蝠特异性ISGs及其已知的抗病毒效应子功能的当前知识。
    The interferon pathway is the first line of defense in viral infection in all mammals, and its induction stimulates broad expression of interferon-stimulated genes (ISGs). In mice and also humans, the antiviral function of ISGs has been extensively studied. As an important viral reservoir in nature, bats can coexist with a variety of pathogenic viruses without overt signs of disease, yet only limited data are available for the role of ISGs in bats. There are multiple species of bats and work has begun deciphering the differences and similarities between ISG function of human/mouse and different bat species. This review summarizes the current knowledge of conserved and bat-specific-ISGs and their known antiviral effector functions.
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  • 文章类型: Journal Article
    乳腺癌是全世界女性最常见的恶性肿瘤。溶瘤病毒的施用是新的有前景的癌症治疗方法之一。这些病毒的复制通常限于具有干扰素(IFN)信号传导缺陷的癌细胞。然而,干扰素信号在所有癌细胞中都没有完全受损,这可能会限制病毒疗法的益处。鉴定实际的IFN介导的生物标志物以鉴定最有可能对病毒疗法有反应的患者将是有帮助的。在这项研究中,八名患者来源的原发性肿瘤培养物感染了ICP34.5缺失的oHSV,然后是感染率,细胞存活,并分析了参与IFN途径的基因的表达。数据显示,在原代培养物显示细胞死亡和对oHSV感染抗性较低的肿瘤中,髓系分化初级反应蛋白(Myd88)的mRNA表达显着升高(P值<0.05)。Myd88表达的分化截止,从接受者工作特性(ROC)曲线推断,预测其他16例患者中只有13例可能对这种oHSV敏感。鉴定这样的生物标志物提高了我们选择对病毒疗法不表现出抗性的患者的能力。
    Breast cancer is the most common malignancy in women worldwide. Administration of oncolytic viruses is one of the novel promising cancer therapy approaches. Replication of these viruses is usually limited to cancer cells that have interferon (IFN) signaling defects. However, Interferon signaling is not completely impaired in all cancer cells which may limit the benefits of virotherapy.    Identification of realistic IFN-mediated biomarkers to identify patients who most likely respond to virotherapy would be helpful. In this study, eight patients-derived primary tumor cultures were infected with an ICP34.5 deleted oHSV, then the rate of infectivity, cell survival, and expression of the gene involved in IFN pathway were analyzed.Data showed that mRNA expressions of Myeloid differentiation primary response protein (Myd88) is significantly higher in tumors whose primary cultures showed less cell death and resistance to oHSV infectivity (P-value < 0.05). The differentiating cut off of Myd88 expression, inferred from the receiver operating characteristic (ROC) curve, predicted that only 13 out of 16 other patients could be sensitive to this oHSV. Identifying such biomarker improves our ability to select the patients who do not exhibit resistance to virotherapy.
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  • 文章类型: Journal Article
    口蹄疫(FMD)是一种高度传染性的病毒性疾病,影响偶蹄动物。与这种疾病有关的问题之一是其致病因子的持续存在,口蹄疫病毒(FMDV)。虽然FMDV持续存在的机制尚不清楚,有线索表明,它可能与病毒蛋白和参与干扰素(IFN)反应的细胞蛋白之间的蛋白-蛋白相互作用(PPI)有关。由于已经在牛中描述了FMDV的持久性,绵羊和山羊,但不是猪,我们筛选了PPI涉及FMDV蛋白和16个主要的I型IFN途径蛋白从这四个物种通过纳米荧光素酶-2-杂交互补试验,以鉴定新的PPI并确定其宿主特异性。由于关于3Dpol在免疫逃逸中的作用的数据有限,因此有关3Dpol的结果是最有趣的,我们决定特别关注这种蛋白质。确定的PPI通过GST拉低得到确认。我们鉴定了3Dpol和7种IFN途径蛋白之间的PPI,即,IKKα,IKKε,IRF3,IRF7,NEMO,MDA5和MAVS。这些PPI在四个研究物种中是保守的,除了3Dpol和MAVS之间的一个,只在猪蛋白中发现。我们还展示了,使用荧光素酶报告基因测定,3Dpol可以抑制IFN途径的诱导阶段。这些结果表明,第一次,3Dpol在FMDV先天免疫逃逸中的推定作用。
    Foot-and-mouth disease (FMD) is a highly contagious viral disease affecting cloven-hoofed animals. One of the issues related to this disease is the persistence of its causative agent, foot-and-mouth disease virus (FMDV). While the mechanisms of FMDV persistence remain unclear, there are clues that it may be related to protein-protein interactions (PPI) between viral proteins and cellular proteins involved in the interferon (IFN) response. Since FMDV persistence has been described in cattle, sheep and goats but not in swine, we screened PPI involving FMDV proteins and sixteen major type-I IFN pathway proteins from these four species by nanoluciferase-2-hybrid complementation assay, in order to identify new PPI and determine their host specificity. As the results concerning the 3Dpol were the most interesting in view of the limited data concerning its role in immune escape, we decided to focus particularly on this protein. The identified PPI were confirmed by GST pull-down. We identified PPI between 3Dpol and seven IFN pathway proteins, namely, IKKα, IKKε, IRF3, IRF7, NEMO, MDA5 and MAVS. These PPI are conserved among the four studied species, with the exception of the one between 3Dpol and MAVS, which was only found with the swine protein. We also showed, using luciferase reporter assays, that 3Dpol could inhibit the induction phase of the IFN pathway. These results demonstrate, for the first time, a putative role for 3Dpol in FMDV innate immune escape.
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  • 文章类型: Journal Article
    作为抵御病毒感染的前线防御机制,先天免疫系统是病毒拮抗作用的主要目标。病毒编码的许多毒力因子在规避宿主防御和增强病毒复制中起作用。这些因素包括病毒蛋白酶,主要负责病毒蛋白的成熟,但另外引起参与先天免疫信号传导的细胞蛋白的蛋白水解裂解。对这些病毒蛋白酶介导的宿主裂解的研究已经阐明了先天免疫网络的复杂性,并对病毒发病机理产生了有价值的见解。在这次审查中,我们将简要概述正链RNA病毒的蛋白酶,主要来自小导航科,黄病毒科和冠状病毒科,蛋白水解处理先天免疫成分并钝化其功能。
    As a frontline defense mechanism against viral infections, the innate immune system is the primary target of viral antagonism. A number of virulence factors encoded by viruses play roles in circumventing host defenses and augmenting viral replication. Among these factors are viral proteases, which are primarily responsible for maturation of viral proteins, but in addition cause proteolytic cleavage of cellular proteins involved in innate immune signaling. The study of these viral protease-mediated host cleavages has illuminated the intricacies of innate immune networks and yielded valuable insights into viral pathogenesis. In this review, we will provide a brief summary of how proteases of positive-strand RNA viruses, mainly from the Picornaviridae, Flaviviridae and Coronaviridae families, proteolytically process innate immune components and blunt their functions.
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