在早期发展中,环境会触发记忆表观基因组程序,从而产生记忆和学习经历,从而将认知表型赋予成年期。为了揭示环境刺激如何影响表观基因组和基因组组织,我们在不断接受新刺激的年轻小鼠中使用了环境富集(EE)的范例。我们对整个皮质的表观基因组和染色质结构进行了分析,并通过深度测序技术对神经元进行了排序。具体来说,我们研究了染色质可及性,基因和蛋白质调控,和3D基因组构象,结合预测的增强子和染色质相互作用。我们发现染色质可及性增加,转录因子结合,包括CTCF介导的绝缘,H3K36me3和H3K79me2的差异占用,以及神经元发育所需的转录程序的变化。EE刺激通过诱导染色体7和17(染色体间)之间的接触增加而导致局部基因组重组。我们的发现支持EE诱导的学习和记忆过程与表观基因组和基因组组织直接相关的观点。
In early development, the environment triggers mnemonic epigenomic programs resulting in memory and learning experiences to confer cognitive phenotypes into adulthood. To uncover how environmental stimulation impacts the epigenome and genome organization, we used the paradigm of environmental enrichment (EE) in young mice constantly receiving novel stimulation. We profiled epigenome and chromatin architecture in whole cortex and sorted neurons by deep-sequencing techniques. Specifically, we studied chromatin accessibility, gene and protein regulation, and 3D genome conformation, combined with predicted enhancer and chromatin interactions. We identified increased chromatin accessibility, transcription factor binding including CTCF-mediated insulation, differential occupancy of H3K36me3 and H3K79me2, and changes in transcriptional programs required for neuronal development. EE stimuli led to local genome re-organization by inducing increased contacts between chromosomes 7 and 17 (inter-chromosomal). Our findings support the notion that EE-induced learning and memory processes are directly associated with the epigenome and genome organization.