induced differentiation

  • DOI:
    文章类型: Journal Article
    目的:探讨骨髓间充质干细胞(BMSCs)诱导分化为肝细胞(HCs)过程中Sox2基因表达及启动子甲基化的变化及作用。
    方法:制备大鼠骨髓Thy-1+Lin-细胞,分为对照组(定向诱导分化为HCs)和实验组(5-氮杂胞苷干预诱导分化)。荧光定量聚合酶链反应(PCR)检测ALB和Sox2的mRNA表达水平,通过亚硫酸氢盐测序PCR(BSP)检测Sox2基因启动子甲基化水平。
    结果:与对照组相比,实验组在0、7和14天时SoxmRNA表达水平显着增加,(均P<0.05)。两组在诱导0、7和14天后Sox2启动子甲基化水平逐渐升高,伴随着甲基化位点的增加(均P<0.05)。CpG甲基化位点组间差异有统计学意义(P均<0.05)。
    结论:大鼠骨髓间充质干细胞诱导过程中Sox2基因表达先升高后降低,启动子区CpG位点甲基化水平动态变化,总体甲基化水平增加。经过5-aza处理,Sox2启动子处于非甲基化状态,它的mRNA表达增加,阻碍了细胞分化。
    OBJECTIVE: To investigate the changes and functions of Sox2 gene expression and promoter methylation during induced differentiation of bone marrow mesenchymal stem cells (BMSCs) into hepatocytes (HCs).
    METHODS: Rat bone marrow Thy-1+Lin- cells were prepared and divided into control group (directed induction of differentiation into HCs) and experimental group (5-azacytidine intervention induced differentiation). The mRNA expression levels of ALB and Sox2 were detected by fluorescence quantitative polymerase chain reaction (PCR), and the Sox2 gene promoter methylation level was determined by Bisulfite sequencing PCR (BSP).
    RESULTS: Sox mRNA expression level was significantly increased in experimental group compared to the control group at 0, 7, and 14 days, respectively (all P<0.05). The Sox2 promoter methylation level was gradually increased after 0, 7 and 14 days induction in both groups, accompanied by an increase in methylated loci (all P<0.05). Statistical significance was present in CpG methylated loci between groups (all P<0.05).
    CONCLUSIONS: The expression of Sox2 gene increased first and then decreased in the process of inducing rat BMSCs into stem cells, and the methylation level of CpG loci in the promoter region changed dynamically, with an increased overall methylation level. After 5-aza treatment, the Sox2 promoter was in a non-methylated state, and its mRNA expression increased, which hindered the cell differentiation.
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  • 文章类型: Journal Article
    适应高原环境的极端条件,牦牛进化出浓密的头发,使它们成为研究头发生长机制的理想模型。通过研究牦牛,我们可以获得有关毛囊在充满挑战的环境中如何发育及其周期性生长的宝贵见解。然而,缺乏关于牦牛毛囊组织学的基本数据,以及缺乏毛囊的体外细胞模型,这限制了这些研究目标。在这项研究中,我们用牦牛模型研究了不同毛囊周期皮肤组织的结构。此外,我们成功建立了牦牛皮肤毛囊相关细胞的体外模型,包括毛乳头细胞(DPC),前脂肪细胞,和成纤维细胞。我们通过简化程序并减少所需的时间来优化DPC培养的显微切割技术。此外,我们改进了将牦牛前脂肪细胞分化为成熟脂肪细胞的方法,从而提高差异化效率。牦牛作为自然模型的引入为探索毛发生长机制提供了宝贵的研究资源,有助于更深入地了解毛囊生物学和再生医学策略的发展。
    To adapt to the extreme conditions of plateau environments, yaks have evolved thick hair, making them an ideal model for investigating the mechanisms involved in hair growth. We can gain valuable insights into how hair follicles develop and their cyclic growth in challenging environments by studying yaks. However, the lack of essential data on yak hair follicle histology and the absence of in vitro cell models for hair follicles serve as a limitation to such research objectives. In this study, we investigated the structure of skin tissue during different hair follicle cycles using the yak model. Additionally, we successfully established in vitro models of hair follicle-associated cells derived from yak skin, including dermal papilla cells (DPCs), preadipocytes, and fibroblasts. We optimized the microdissection technique for DPCs culture by simplifying the procedure and reducing the time required. Furthermore, we improved the methodology used to differentiate yak preadipocytes into mature adipocytes, thus increasing the differentiation efficiency. The introduction of yak as a natural model provides valuable research resources for exploring the mechanisms of hair growth and contributes to a deeper understanding of hair follicle biology and the development of regenerative medicine strategies.
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  • 文章类型: Journal Article
    在初步实验中,发现在佛波醇12-肉豆蔻酸酯13乙酸酯(PMA)脂多糖(LPS)干扰素(IFN)-γ诱导的THP-1细胞分化为单核细胞/巨噬细胞后,c-myc表达降低。然后通过使用TargetScan和PubMed的横截面分析和差异微阵列分析发现miR-let-7c-5p的表达升高。本研究旨在探讨miR-let-7c-5p/c-myc信号轴在PMA+LPS+IFN-γ诱导的THP-1白血病细胞向单核细胞/巨噬细胞定向分化中的作用。PMA+LPS+IFN-γ诱导人THP-1白血病细胞分化成单核细胞/巨噬细胞。诱导48小时后,在倒置显微镜下直接观察THP-1细胞的生长密度,使用细胞计数Kit-8测定法测量细胞增殖,并使用流式细胞术测量细胞周期和分化相关抗原(CD11b和CD14)的表达。使用逆转录-定量PCR检测miR-let-7c-5p和c-myc的mRNA表达,使用蛋白质印迹分析检测c-myc的蛋白表达。双荧光素酶报告基因分析用于检测miR-let-7c-5p在c-myc的3'UTR上的靶向结合。PMA+LPS+IFN-γ诱导的THP-1细胞中miR-let-7c-5p和c-myc基因的相对表达分别上调和下调,miR-let-7c-5p的表达与c-myc基因的表达呈负相关。双荧光素酶报告基因测定证实miR-let-7c-5p靶向c-myc的3'UTR并抑制荧光素酶活性。用miR-let-7c-5p模拟物转染后,c-myc的表达明显下调,THP-1细胞的增殖能力下降,CD11b和CD14的表达率显著增高。拯救实验表明,通过转染c-myc过表达载体,miR-let-7c-5p模拟物对THP-1细胞增殖和分化的影响减弱。一起,本研究的结果表明,miR-let-7c-5p可以靶向c-myc的3'UTR区,miR-let-7c-5p/c-myc信号轴是参与白血病细胞定向分化为单核细胞/巨噬细胞的关键途径之一.
    In a preliminary experiment, it was found that c-myc expression was decreased following the differentiation of THP-1 cells into monocytes/macrophages induced by phorbol 12-myristate 13 acetate (PMA) + lipopolysaccharide (LPS) + interferon (IFN)-γ. The expression of miR-let-7c-5p was then found to be elevated by cross-sectional analysis using TargetScan and PubMed and differential microarray analysis. The present study aimed to investigate the role of the miR-let-7c-5p/c-myc signaling axis in the committed differentiation of THP-1 leukemic cells into monocytes/macrophages induced by PMA + LPS + IFN-γ. Human THP-1 leukemic cells were induced to differentiate into monocytes/macrophages by PMA + LPS + IFN-γ. Following induction for 48 h, the growth density of the THP-1 cells was observed directly under an inverted microscope, cell proliferation was measured using Cell Counting Kit-8 assay and the cell cycle and the expression of differentiation-related antigens (CD11b and CD14) were measured using flow cytometry. The mRNA expression of miR-let-7c-5p and c-myc was detected using reverse transcription-quantitative PCR and the protein expression of c-myc was detected using western blot analysis. Dual luciferase reporter gene analysis was used to detect the targeted binding of miR-let-7c-5p on the 3\'UTR of c-myc. The relative expression of miR-let-7c-5p and c-myc genes in THP-1 cells induced by PMA + LPS + IFN-γ was found to be up- and downregulated respectively, and expression of miR-let-7c-5p was negatively correlated with the expression of c-myc gene. Dual luciferase reporter gene assays confirmed that miR-let-7c-5p targeted the 3\'UTR of c-myc and inhibited luciferase activity. Following transfection with miR-let-7c-5p mimics, the expression of c-myc was markedly downregulated and the proliferative ability of the THP-1 cells was decreased, while the expression rate of CD11b and CD14 was significantly increased. The rescue experiment revealed that the effects of miR-let-7c-5p mimics on the proliferation and differentiation of THP-1 cells were attenuated by transfection with c-myc overexpression vector. Together, the findings of the present study demonstrated that miR-let-7c-5p can target the 3\'UTR region of c-myc and that the miR-let-7c-5p/c-myc signaling axis is one of the critical pathways involved in the directional differentiation of leukemic cells into monocytes/macrophages.
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  • 文章类型: Journal Article
    造血干细胞和祖细胞(HSPC)的研究将有助于阐明血液病的发病机制。本研究旨在建立鸡骨髓(BM)来源的HSPCs的分离方法和培养体系,并测试其增殖和分化能力。从鸡BM中收集单核细胞,分离CD34+HSPC。然后,细胞在具有不同细胞因子组成的培养基中培养,和成长状态,细胞表型,在不同时间点分析细胞的形态外观。我们的结果表明,Iscove's改良Dulbecco's培养基补充了50ng/mL干细胞因子,30ng/mLFlt-3配体,10μg/mL白细胞介素3,50ng/mL白细胞介素6%,和10%的鸡血清支持鸡CD34+HSPC离体存活约10天。向上述培养体系中加入80ng/mL粒细胞集落刺激因子和30ng/mL粒细胞巨噬细胞集落刺激因子,形成骨髓细胞分化诱导培养体系。在该系统中培养72小时后,大约66%的鸡CD34+HSPC表现出CD11b+表型,表明HSPC分化为髓系细胞。总之,鸡BM来源的CD34+细胞具有HSPC特征,其可以在含有生长因子的培养基中自我更新并分化成骨髓细胞。
    Hematopoietic stem and progenitor cell (HSPC) research will help elucidate the pathogenesis of hematologic diseases. The present study aimed to establish an isolation method and culture system for chicken bone marrow (BM)-derived HSPCs and test their proliferation and differentiation abilities. Mononuclear cells were collected from chicken BM, and CD34+ HSPCs were isolated. Then, the cells were cultured in media with different cytokine compositions, and the growth status, cell phenotype, and morphological appearance of the cells were analyzed at different time points. Our results showed that Iscove\'s Modified Dulbecco\'s Medium supplemented with 50 ng/mL stem cell factor, 30 ng/mL Flt-3 ligand, 10 μg/mL interleukin 3, 50 ng/mL interleukin 6%, and 10% chicken serum supported chicken CD34+ HSPC survival ex vivo for approximately 10 d. Further, 80 ng/mL granulocyte-colony stimulating factor and 30 ng/mL granulocyte macrophage-colony stimulating factor were added into the above culture system to form a myeloid cell differentiation induction culture system. After culturing in this system for 72 h, approximately 66% of chicken CD34+ HSPCs exhibited a CD11b+ phenotype, indicating that HSPCs differentiated into myeloid cells. In conclusion, chicken BM-derived CD34+ cells possess HSPC characteristics that can self-renew and differentiate into myeloid cells in a culture medium containing growth factors.
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  • 文章类型: English Abstract
    本研究的目的是克隆和表征ZFP36L1(锌指蛋白36样1)基因,阐明其表达特征,并阐明其在山羊不同组织中的表达模式。建州大耳山羊的15个组织样本,包括心脏,肝脏,脾,脾收集肺和肾。通过逆转录-聚合酶链反应(RT-PCR)扩增山羊ZFP36L1基因,然后通过在线工具分析基因和蛋白质序列。采用实时定量聚合酶链反应(qPCR)检测ZFP36L1在不同组织和不同分化阶段山羊脂肪细胞肌内前脂肪细胞中的表达水平。结果表明,ZFR36L1基因长度为1224bp,编码序列(CDS)区域为1017bp,编码338个氨基酸,它是一种非分泌型不稳定蛋白,主要位于细胞核和细胞质中。组织表达谱显示ZFP36L1基因在所有选择的组织中均有表达。在内脏组织中,小肠表达量最高(P<0.01)。在肌肉组织中,最高的表达水平出现在背最长肌(P<0.01),而在皮下脂肪组织中的表达水平显著高于其他组织(P<0.01)。诱导分化结果表明,该基因在肌内前体脂肪细胞成脂分化过程中表达上调(P<0.01)。这些数据可能有助于阐明山羊ZFP36L1基因的生物学功能。
    The purpose of this study was to clone and characterize the ZFP36L1 (zinc finger protein 36-like 1) gene, clarify its expression characteristics, and elucidate its expression patterns in different tissues of goats. Samples of 15 tissues from Jianzhou big-eared goats, including heart, liver, spleen, lung and kidney were collected. Goat ZFP36L1 gene was amplified by reverse transcription-polymerase chain reaction (RT-PCR), then the gene and protein sequence were analyzed by online tools. Quantitative real-time polymerase chain reaction (qPCR) was used to detect the expression level of ZFP36L1 in intramuscular preadipocytes in different tissues and adipocytes of goat at different differentiation stages. The results showed that the length of ZFR36L1 gene was 1 224 bp, and the coding sequence (CDS) region was 1 017 bp, encoding 338 amino acids, which was a non-secretory unstable protein mainly located in nucleus and cytoplasm. Tissue expression profile showed that ZFP36L1 gene was expressed in all selected tissues. In visceral tissues, the small intestine showed the highest expression level (P < 0.01). In muscle tissue, the highest expression level was presented in longissimus dorsi muscle (P < 0.01), whereas the expression level in subcutaneous adipose tissue was significantly higher than that in other tissues (P < 0.01). The results of induced differentiation showed that the expression of this gene was up-regulated during adipogenic differentiation of intramuscular precursor adipocytes (P < 0.01). These data may help to clarify the biological function of the ZFP36L1 gene in goat.
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  • DOI:
    文章类型: Journal Article
    目的:检测人脐带间充质干细胞(hUMSCs)与小鼠原始生殖细胞(PGCs)体外共培养微环境中减数分裂特异性基因的mRNA和蛋白表达。并进一步探讨hUMSCs向PGCs分化的有效潜能。
    方法:通过贴壁培养从人沃顿的果冻片段获得HUMSCs。PGCs来源于后12.5天(dpc)BalbC小鼠。然后将hUMSCs与PGCs在Matrigel中共培养,在培养室的内部或外部,分别。观察形态和细胞遗传学特征的变化。使用免疫荧光染色检测和分析hUMSCs中SCP3和DDX4的表达。Oct-4,Stra8,Zp3和Dmc1基因在PGCs中的表达,hUMSCs,通过实时逆转录-聚合酶链反应分析与PGCs共培养后的hUMSCs。
    结果:hUMSCs和PGCs均以不同程度表达Oct-4。与PGCs共培养后,hUMSC变圆并显示AKP活性。在Matrigel中悬浮培养或与细胞室粘附培养的HUMSC显着表达Stra8,DMC1,SCP3和DDX4基因。
    结论:HUMSCs可以被诱导表达PGC特异性基因Stra8和DMC1,精原细胞/卵母细胞特异性基因SCP3和DDX4,它们在分子水平上预测向早期生殖细胞的定向分化潜力。
    OBJECTIVE: To detect mRNA and protein expression of meiosis-specific genes in human umbilical cord mesenchymal stem cells (hUMSCs) in an in vitro co-culture microenvironment with mouse primordial germ cells (PGCs), and to further explore the effective potential of hUMSCs to differentiate into PGCs.
    METHODS: HUMSCs were obtained from human Wharton\'s jelly fragments by adherent culture. PGCs were derived from 12.5 days post-coitum (dpc) BalbC mice. Then hUMSCs were co-cultured with PGCs in Matrigel, inside or outside of a culture chamber, respectively. The changes in morphology and cytogenetic characteristics were observed. SCP3 and DDX4 expression in hUMSCs were detected and analyzed using immunofluorescence staining. Oct-4, Stra8, Zp3 and Dmc1 gene expressions in PGCs, hUMSCs, and hUMSCs after co-culture with PGCs were analyzed by real time reverse transcription-polymerase chain reaction.
    RESULTS: Both hUMSCs and PGCs expressed Oct-4 at different degrees. After co-culture with PGCs, hUMSCs became rounded and showed AKP activity. HUMSCs suspension-cultured in Matrigel or adherent cultured with cell chamber significantly expressed Stra8, DMC1, SCP3 and DDX4 genes.
    CONCLUSIONS: HUMSCs can be induced to express PGC-specific genes Stra8 and DMC1, spermatogonium/oogonium-specific genes SCP3 and DDX4 that predict directed differentiation potential into early germ cells at a molecular level.
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  • 文章类型: Journal Article
    诱导粒细胞分化的研究有助于揭示细胞成熟的分子机制。核蛋白质组代表了调节分子的丰富来源,包括转录因子(TFs)。重要的是在分化过程的早期阶段了解分子扰动。通过使用等量异位标记应用蛋白质组学定量分析,我们发现214、319、376、426和391蛋白质的含量在3、6、9、12和72小时发生了变化,分别,与全反式维甲酸(ATRA)处理下HL-60细胞核部分的0h相比。从1860年鉴定的核蛋白,231个蛋白质被注释为具有转录因子(TF)活性的蛋白质。六个TF(RREB1、SRCAP、在ATRA治疗后的早期时间点(3-12小时),CCDC124,TRIM24,BRD7和BUD31)下调,三个TFsEWSR1,ENO1和FUS上调。生物信息学注释表明HL-60核蛋白质组参与RUNX1触发途径的DNA损伤识别,在p53调节途径中。通过使用稳定的同位素标记的肽标准(MRM/SIS)进行预定的多反应监测,我们发现以下蛋白质的含量持续增加:PRAM1,CEPBP,RBPJ,ATRA诱导的粒细胞分化过程中HL-60细胞核部分中的HIC1。在STAT1,CASP3,PARP1和PRKDC蛋白的情况下,在ATRA治疗后的早期时间点(3-12小时)观察到它们的含量短暂增加.获得的粒细胞分化过程中核蛋白质组组成和动力学的数据可能有利于开发具有突变p53基因的白血病的新治疗方法。
    Studies of induced granulocytic differentiation help to reveal molecular mechanisms of cell maturation. The nuclear proteome represents a rich source of regulatory molecules, including transcription factors (TFs). It is important to have an understanding of molecular perturbations at the early stages of the differentiation processes. By applying the proteomic quantitative profiling using isobaric labeling, we found that the contents of 214, 319, 376, 426, and 391 proteins were altered at 3, 6, 9, 12, and 72 h, respectively, compared to 0 h in the HL-60 cell nuclear fraction under all-trans-retinoid acid (ATRA) treatment. From 1860 identified nuclear proteins, 231 proteins were annotated as proteins with transcription factor (TF) activity. Six TFs (RREB1, SRCAP, CCDC124, TRIM24, BRD7, and BUD31) were downregulated and three TFs EWSR1, ENO1, and FUS were upregulated at early time points (3-12 h) after ATRA treatment. Bioinformatic annotation indicates involvement of the HL-60 nuclear proteome in DNA damage recognition in the RUNX1-triggered pathway, and in the p53-regulation pathway. By applying scheduled multiple reaction monitoring using stable isotopically labeled peptide standards (MRM/SIS), we found a persistent increase in the content of the following proteins: PRAM1, CEPBP, RBPJ, and HIC1 in the HL-60 cell nuclear fraction during ATRA-induced granulocytic differentiation. In the case of STAT1, CASP3, PARP1, and PRKDC proteins, a transient increase in their content was observed at early time points (3-12 h) after the ATRA treatment. Obtained data on nuclear proteome composition and dynamics during granulocytic differentiation could be beneficial for the development of new treatment approaches for leukemias with the mutated p53 gene.
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  • 文章类型: English Abstract
    本研究的目的是研究激活转录因子3(ATF3)对山羊肌内前脂肪细胞分化的影响。并在分子水平上阐明其可能的作用途径。在这项研究中,构建了山羊pEGFP-N1-ATF3重组质粒,用脂质体转染肌内前脂肪细胞。通过定量实时PCR(qRT-PCR)检测脂肪细胞分化标记基因的相对表达水平。用山羊pEGFP-N1-ATF3过表达载体转染山羊肌内前脂肪细胞后,发现脂滴的积累受到抑制,和脂肪细胞分化标志物PPARγ,C/EBPα和SREBP1表达极显著下调(P<0.01),C/EBPβ和AP2表达明显下调(P<0.05)。预测ATF3结合位点存在于PPARγ启动子区,ALGGENPROMO计划的C/EBPα和AP2。山羊ATF3的过表达抑制脂滴在肌内前体脂肪细胞中的积累,这种效果可以通过下调PPARγ来实现,C/EBPα和AP2。这些结果可能有助于阐明ATF3在调节山羊肌内前体脂肪细胞分化中的调节机制。
    The aim of this study was to investigate the effect of activating transcription factor 3 (ATF3) on the differentiation of intramuscular preadipocytes in goat, and to elucidate its possible action pathway at the molecular level. In this study, the recombinant plasmid of goat pEGFP-N1-ATF3 was constructed, and the intramuscular preadipocytes were transfected with liposomes. The relative expression levels of adipocyte differentiation marker genes were detected by quantitative real-time PCR (qRT-PCR). After transfection of goat intramuscular preadipocytes with the goat pEGFP-N1-ATF3 overexpression vector, it was found that the accumulation of lipid droplets was inhibited, and the adipocyte differentiation markers PPARγ, C/EBPα and SREBP1 were extremely significantly down-regulated (P < 0.01), while C/EBPβ and AP2 were significantly down-regulated (P < 0.05). The ATF3 binding sites were predicted to exist in the promoter regions of PPARγ, C/EBPα and AP2 by the ALGGEN PROMO program. The overexpression of goat ATF3 inhibits the accumulation of lipid droplets in intramuscular preadipocytes, and this effect may be achieved by down-regulating PPARγ, C/EBPα and AP2. These results may facilitate elucidation of the regulatory mechanism of ATF3 in regulating the differentiation of goat intramuscular preadipocytes.
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  • 文章类型: Journal Article
    Multiple methodologies have been reported to facilitate skin-derived precursor (SKP) growth, but the impact of plating density on SKP growth has not been studied. To determine the optimal plating density, we used six plating densities and two types of flasks for mouse SKP (mSKP) culture. On the 14th day, the number, diameter, and viability of mSKP spheres were compared by morphological assessment and cell counting kit 8, and we found the optimal plating density was 2.5 × 105-5 × 105 cells/mL. In addition, we investigated the correlation between the SKP spheres and the adherent cell colonies in the serum-free culture system. We treated the adherent cell colonies with two culture conditions and characterized the cells generated from two conditions by immunocytochemistry and induced differentiation, respectively. The results elucidated that the adherent cell colonies differentiated into either mSKPs or dermal mesenchymal stem cells under appropriate culture conditions. In conclusion, mSKP spheres differentiated from the adherent cell colonies. The optimal plating density significantly promoted and advanced the proliferation of adherent cell colonies, which optimized mSKP growth and yield. The adherent cell colonies possessed the capacity of differentiating into different types of cells under appropriate culture conditions.
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  • 文章类型: Journal Article
    在全反式维甲酸(ATRA)治疗下,人白血病细胞的诱导粒细胞分化是急性髓细胞白血病分化治疗的基础。了解了该过程的调节,就有可能确定抗白血病药物的潜在靶标并开发分化治疗的新方法。在这项研究中,我们进行了转录组学和蛋白质组学分析,以揭示时程实验中上调和下调的转录本和蛋白质。使用差异表达的转录本和蛋白质的数据,我们应用了上游调节因子搜索,并获得了基于转录组和蛋白质组的诱导粒细胞分化的调节网络,该网络涵盖了两者的上调(HIC1,NFKBIA,和CASP9)和下调(PARP1、VDR、和RXRA)元素。为了验证设计的网络,我们使用稳定的同位素标记的肽标准品通过选择的反应监测(SRM)在粒细胞分化期间测量HIC1和PARP1蛋白丰度。我们还发现转录因子CEBPB和LYN激酶参与了分化的发生,并通过SRM技术评估其蛋白质水平。获得的结果表明,组学数据反映了DNA修复系统和MAPK激酶级联的参与,并以不依赖p53的方式显示了细胞存活和凋亡过程之间的平衡。差异表达的转录本和蛋白质,预测转录因子,和关键分子,如HIC1,CEBPB,LYN,PARP1可能是急性髓系白血病分化治疗的潜在靶点。
    Induced granulocytic differentiation of human leukemic cells under all-trans-retinoid acid (ATRA) treatment underlies differentiation therapy of acute myeloid leukemia. Knowing the regulation of this process it is possible to identify potential targets for antileukemic drugs and develop novel approaches to differentiation therapy. In this study, we have performed transcriptomic and proteomic profiling to reveal up- and down-regulated transcripts and proteins during time-course experiments. Using data on differentially expressed transcripts and proteins we have applied upstream regulator search and obtained transcriptome- and proteome-based regulatory networks of induced granulocytic differentiation that cover both up-regulated (HIC1, NFKBIA, and CASP9) and down-regulated (PARP1, VDR, and RXRA) elements. To verify the designed network we measured HIC1 and PARP1 protein abundance during granulocytic differentiation by selected reaction monitoring (SRM) using stable isotopically labeled peptide standards. We also revealed that transcription factor CEBPB and LYN kinase were involved in differentiation onset, and evaluated their protein levels by SRM technique. Obtained results indicate that the omics data reflect involvement of the DNA repair system and the MAPK kinase cascade as well as show the balance between the processes of the cell survival and apoptosis in a p53-independent manner. The differentially expressed transcripts and proteins, predicted transcriptional factors, and key molecules such as HIC1, CEBPB, LYN, and PARP1 may be considered as potential targets for differentiation therapy of acute myeloid leukemia.
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