identification methods

识别方法
  • 文章类型: Journal Article
    外来体已成为细胞间通讯和细胞与其环境之间的各种生理过程的关键介质。这些纳米大小的囊泡已被广泛研究并证实在动物系统中表现出多功能性。特别是,它们参与细胞间信号传导,影响疾病进展,并表现出生物活性。然而,植物来源外泌体(PDEs),尤其是治疗性PDEs,在过去的几十年中,受到的关注相对有限。最近的研究表明,PDEs除了参与细胞间的通讯外,还参与信号分子的转运。因为它们在细胞微环境中充当功能分子。这一特点突出了PDE在广泛的应用中的巨大潜力,包括抗氧化,抗炎,肿瘤细胞消除,免疫调节,和组织再生。此外,PDE作为有效的药物载体有着巨大的希望,增强治疗剂的稳定性和生物利用度,并因此能够靶向递送至特定细胞或组织。因此,PDE可以作为药物递送和治疗各种疾病的有效工具。这篇全面的综述概述了治疗性PDEs的最新研究,专注于他们的提取,隔离,表征方法,生物活动,和应用前景。综述了药用植物外泌体样纳米囊泡的研究进展,特别强调中医,并强调了它们在疾病治疗和纳米颗粒递送中的重要性。主要目标是加速这些纳米囊泡的临床翻译,同时为创新药物的研究和开发提供新的方法和方法。
    Exosomes have emerged as critical mediators of intercellular communication and various physiological processes between cells and their environment. These nano-sized vesicles have been extensively investigated and confirmed to exhibit multifunctionality in animal systems. In particular, they participate in intercellular signaling, influence disease progression, and exhibit biological activity. However, Plant-Derived Exosomes (PDEs), especially therapeutic PDEs, have received relatively limited attention in the past few decades. Recent studies have demonstrated that PDEs are involved in signaling molecule transport in addition to intercellular communication, as they serve as functional molecules in the cellular microenvironment. This characteristic highlights the immense potential of PDEs for a wide array of applications, including antioxidation, anti-inflammation, tumour cell elimination, immune modulation, and tissue regeneration. In addition, PDEs hold substantial promise as efficient drug carriers, enhancing the stability and bioavailability of therapeutic agents and consequently enabling targeted delivery to specific cells or tissues. Therefore, PDEs may serve as effective tools for drug delivery and the treatment of various diseases. This comprehensive review provides an overview of recent studies on therapeutic PDEs, focusing on their extraction, isolation, characterization methods, biological activities, and application prospects. It summarises the research progress of exosome-like nanovesicles derived from medicinal plants, with a specific emphasis on traditional Chinese medicine, and highlights their importance in disease treatment and nanoparticle delivery. The main objective is to accelerate the clinical translation of these nanovesicles while providing novel approaches and methodologies for the research and development of innovative drugs.
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  • 文章类型: Journal Article
    随着节能措施以及建筑实践和气候的变化变得越来越普遍,遇到湿度问题和真菌生长的建筑物数量似乎正在增加。确定问题的原因并记录真菌生长的类型和程度是涉及建筑物理学和室内真菌学的复杂过程。引入了新的检测和识别方法,新的真菌物种已被添加到与建筑相关的真菌名单中。然而,缺乏标准化的程序和一般知识阻碍了解决问题和倡导有效的翻新计划的努力。这篇综述为建筑物检查提供了框架,以了解当前与建筑物相关的真菌的采样方法和检测技术。该评论还包含在欧洲和北美常用建筑材料上已确定的真菌物种的表格(例如,石膏墙板,定向刨花板(OSB),混凝土和矿棉)。在所有材料中报道最多的建筑相关真菌是产黄青霉和杂色曲霉。球毛虫在所有有机材料上都很常见,而黑曲霉在所有无机材料上都很常见。
    The number of buildings experiencing humidity problems and fungal growth appears to be increasing as energy-saving measures and changes in construction practices and climate become more common. Determining the cause of the problem and documenting the type and extent of fungal growth are complex processes involving both building physics and indoor mycology. New detection and identification methods have been introduced, and new fungal species have been added to the list of building-related fungi. However, the lack of standardised procedures and general knowledge hampers the effort to resolve the problems and advocate for an effective renovation plan. This review provides a framework for building inspections on current sampling methods and detection techniques for building-related fungi. The review also contains tables with fungal species that have been identified on commonly used building materials in Europe and North America (e.g., gypsum wallboard, oriented strand board (OSB), concrete and mineral wool). The most reported building-associated fungi across all materials are Penicillium chrysogenum and Aspergillus versicolor. Chaetomium globosum is common on all organic materials, whereas Aspergillus niger is common on all inorganic materials.
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  • 文章类型: Journal Article
    植物花卉排放的挥发性有机化合物(VOCs)具有很大的化学多样性。这些化合物在植物生态学中起着重要的作用。这篇综述介绍了植物花气味羽流中存在的VOCs的不同生态作用。比如授粉,防御,适应环境,以及与其他生物的交流。植物中挥发性有机化合物的产生和积累地点及其时空变化,包括环境问题,也进行了总结。为定性和定量评价VOCs的化学成分,使用了几种提取和分析方法。现在,顶空(HS)采样与固相微萃取(SPME)相结合已为提取过程开发。参数是已知的,现在有几种纤维可以优化这种提取。大多数时候,SPME与气相色谱-质谱联用(GC-MS)来确定VOCs的结构鉴定,注意使用几种互补的识别方法,如使用数据库,保留指数,and,当可用时,与真实的标准分析进行比较。在环境和气候变化的背景下,关于花卉排放的挥发性有机化合物的知识的发展对植物生态学具有重要意义。
    Volatile organic compounds (VOCs) with a large chemical diversity are emitted by plant flowers. These compounds play an important role in the ecology of plants. This review presents the different ecological roles of VOCs present in the odor plumes of plant flowers, such as pollination, defense, adaptation to their environment, and communication with other organisms. The production and accumulation sites of VOCs in plants with their spatial and temporal variations, including environmental issues, are also summarized. To evaluate the qualitative and quantitative chemical composition of VOCs, several methods of extraction and analysis were used. Headspace (HS) sampling coupled with solid phase microextraction (SPME) is now well-developed for the extraction process. Parameters are known, and several fibers are now available to optimize this extraction. Most of the time, SPME is coupled with gas chromatography-mass spectrometry (GC-MS) to determine the structural identification of the VOCs, paying attention to the use of several complementary methods for identification like the use of databases, retention indices, and, when available, comparison with authentic standards analyses. The development of the knowledge on VOCs emitted by flowers is of great importance for plant ecology in the context of environmental and climate changes.
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  • 文章类型: Journal Article
    线粒体DNA(mtDNA)在细胞内线粒体内复制并规范地发挥功能,但是最近的发现揭示了mtDNA还有另一个令人兴奋的细胞外生命。mtDNA片段和含线粒体的囊泡结构在高浓度下以无细胞形式被检测到,在不同的生物流体中。通常称为无细胞mtDNA(cf-mtDNA),该领域目前没有一个全面的分类系统,该系统承认存在于细胞外的mtDNA和整个线粒体的各种生物形式。这种分类的缺失阻碍了在不同实验室中创建精确和一致的量化方法。这对于揭示mtDNA的分子和生物学特性至关重要。在这篇文章中,我们整合了最近的发现,提出了不同类型的细胞外mtDNA[ex-mtDNA]的分类。主要的生物学不同类型包括:裸mtDNA[N-mtDNA],非线粒体膜内的mtDNA[M-mtDNA],细胞外线粒体[exM-mtDNA],和线粒体内的mtDNA被膜包围[MM-mtDNA]。我们概述了与准确量化这些前mtDNA类型相关的挑战,提示每种前mtDNA类型的潜在生理作用,并探讨这种分类如何为未来的研究工作以及对ex-mtDNA的进一步分析和定义奠定基础。通过提出循环mtDNA形式的分类,我们与临床公认的胆固醇形式相似,例如HDL和LDL,以类似的方式说明潜在的未来意义。虽然不直接类似,这些mtDNA形式有一天可能在临床解释中与目前的胆固醇组分一样具有生物学相关性。我们还讨论了如何改进可靠地量化不同的前mtDNA形式的方法可以显着增强其作为健康或疾病生物标志物的效用。以及它们的应用如何提供创新的治疗方法。
    The mitochondrial DNA (mtDNA) is replicated and canonically functions within intracellular mitochondria, but recent discoveries reveal that the mtDNA has another exciting extracellular life. mtDNA fragments and mitochondria-containing vesicular structures are detected at high concentrations in cell-free forms, in different biofluids. Commonly referred to as cell-free mtDNA (cf-mtDNA), the field is currently without a comprehensive classification system that acknowledges the various biological forms of mtDNA and whole mitochondria existing outside the cell. This absence of classification hampers the creation of precise and consistent quantification methods across different laboratories, which is crucial for unraveling the molecular and biological characteristics of mtDNA. In this article, we integrate recent findings to propose a classification for different types of Extracellular mtDNA [ex-mtDNA]. The major biologically distinct types include: Naked mtDNA [N-mtDNA], mtDNA within non-mitochondrial Membranes [M-mtDNA], Extracellular mitochondria [exM-mtDNA], and mtDNA within Mitochondria enclosed in a Membrane [MM-mtDNA]. We outline the challenges associated with accurately quantifying these ex-mtDNA types, suggest potential physiological roles for each ex-mtDNA type, and explore how this classification could establish a foundation for future research endeavors and further analysis and definitions for ex-mtDNA. By proposing this classification of circulating mtDNA forms, we draw a parallel with the clinically recognized forms of cholesterol, such as HDL and LDL, to illustrate potential future significance in a similar manner. While not directly analogous, these mtDNA forms may one day be as biologically relevant in clinical interpretation as cholesterol fractions are currently. We also discuss how advancing methodologies to reliably quantify distinct ex-mtDNA forms could significantly enhance their utility as health or disease biomarkers, and how their application may offer innovative therapeutic approaches.
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  • 文章类型: Journal Article
    自2010年以来,李斯特菌属增加了22个新物种,这些物种的数量是2010年之前确定的物种数量的两倍多。这22个新物种中有16个与该类型物种密切相关,单核细胞增生李斯特菌,以及其中几种目前的表型,将它们与经典的李斯特菌物种区分开来(L.单核细胞增多症,无害李斯特菌,伊万诺维李斯特菌,Seeligeri李斯特菌,李斯特菌,和灰李斯特菌)。这22个新描述的物种还表明,李斯特菌比以前估计的更具遗传多样性。虽然需要未来的研究和调查来澄清这些物种的分布,至少这些物种中的一些可能没有广泛传播,而其他物种可能经常被发现传播到与人类相关的环境(例如,农场和加工设施),和其他人可以适应特定的环境栖息地。这里,我们回顾了分类学,系统发育,以及自2010年以来确定的这些新李斯特菌物种的生态特征,并重申将某些物种重新分类为三个新属的建议:Murraya,Mesolisteria,和Paenilisteria.我们还对当前的检测问题以及与这些新物种的识别相关的食品安全进行了审查。例如,几个新的非致病性物种可能被误认为是病原体单核细胞增生李斯特菌,基于不针对单核细胞增生李斯特菌特异性毒力基因/因子的方法,导致不必要的产品召回。此外,由于Mesolisteria物种无法在低温下生长,因此拟议的新属Mesolisteria属中的8种不是环境条件的良好指标,这可能使单核细胞增生李斯特菌生长。
    Since 2010, the genus Listeria has had the addition of 22 new species that more than tripled the number of species identified until 2010. Sixteen of these 22 new species are distantly related to the type species, Listeria monocytogenes, and several of these present phenotypes that distinguish them from classical Listeria species (L. monocytogenes, Listeria innocua, Listeria ivanovii, Listeria seeligeri, Listeria welshimeri, and Listeria grayi). These 22 newly described species also show that Listeria is more genetically diverse than previously estimated. While future studies and surveys are needed to clarify the distribution of these species, at least some of these species may not be widely spread, while other species may be frequently found spread to human-related settings (e.g., farms and processing facilities), and others may be adapted to specific environmental habitats. Here, we review the taxonomic, phylogenetic, and ecological characteristics of these new Listeria species identified since 2010 and re-iterate the suggestion of re-classification of some species into three new genera: Murraya, Mesolisteria, and Paenilisteria. We also provide a review of current detection issues and the relevance to food safety related to the identification of these new species. For example, several new non-pathogenic species could be misidentified as the pathogen L. monocytogenes, based on methods that do not target L. monocytogenes-specific virulence genes/factors, leading to unnecessary product recalls. Moreover, eight species in the proposed new genus Mesolisteria are not good indicators of environmental conditions that could allow L. monocytogenes to grow since Mesolisteria species are unable to grow at low temperatures.
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  • 文章类型: Journal Article
    地下人工洞室的开发在城市空间资源开发中起着重要作用。随着不同深度和尺度的地下人造空洞数量的快速增长,地下人工空洞的探测和识别已成为地下工程研究的关键问题。地球物理技术已被广泛用于建筑,管理,和维护地下人造空腔。在这项研究中,我们提出了两种地下人工空洞的识别方法。视电阻率成像是最流行的快速识别地下人工空洞的技术,使用三维地球模型的正演模拟结果,并将其与人造空腔的预设位置进行比较,正如实验中所证明的。进一步提高地下人工洞室识别的效率,我们开发了一种基于贝叶斯卷积神经网络(BCNN)的地下人工空洞快速识别方法。与传统的卷积神经网络相比,在使用视电阻率图像数据集识别地下人工空洞的分类精度和效率方面,BCNN方法的性能大大提高。
    The development of underground artificial cavities plays an important role in the exploitation of urban spatial resources. As the rapidly growing number of underground artificial cavities with different depths and scales increases, the detection and identification of underground artificial cavities has become a key issue in underground engineering studies. Geophysical techniques have been widely used for the construction, management, and maintenance of underground artificial cavities. In this study, we present two identification methods for underground artificial cavities. Apparent resistivity imaging is the most popular technique for quickly identifying underground artificial cavities, using the forward simulation results of a three-dimensional earth model and comparing these with the preset positions of artificial cavities, as demonstrated in the experiment. To further improve the efficiency of underground artificial cavity identification, we developed a fast recognition approach for underground artificial cavities based on the Bayesian convolutional neural network (BCNN). Compared to a traditional convolutional neural network, the performance of the BCNN method was greatly improved in terms of the classification accuracy and efficiency of identifying underground artificial cavities with apparent resistivity image datasets.
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  • 文章类型: Journal Article
    用于过氧单硫酸盐(PMS)活化的催化剂在有机废水的净化中很有吸引力。单线态氧(1O2)被广泛认为是降解催化剂/PMS系统中有机污染物的关键反应性物质,因为它对无机阴离子具有很强的抵抗力,高选择性,和广泛的pH适用性。随着对催化剂/PMS体系中1O2的研究的迅速发展,有必要对其当前状态进行全面审查。这篇综述重点介绍了催化剂/PMS系统中有关1O2的最新进展,主要关注生成途径和识别方法。基于催化剂中是否包含金属元素(通过金属物质的几何结构来区分)(通过活性位点来区分)来总结1O2的产生途径。此外,这篇综述深入讨论了不同几何结构的金属价态和金属种类对1O2生成的影响。从催化剂设计的角度探索了各种潜在的策略来调节1O2的生成。1O2的鉴定方法主要包括电子顺磁共振(EPR),淬火实验,在D2O溶液中反应,和催化剂/PMS系统中的化学探针测试。全面介绍了这些方法的原理和应用及其适用性。可能的分歧,以及相应的解决方案。此外,提供了一种主要识别方法组合的识别程序,以评估1O2在催化剂/PMS系统中的作用。最后,提出了进一步研究的几种观点,以促进催化剂/PMS系统中1O2的发展。
    Catalysts for peroxymonosulfate (PMS) activation are appealing in the purification of organic wastewater. Singlet oxygen (1O2) is widely recognized as a crucial reactive species for degrading organic contaminants in catalysts/PMS systems due to its adamant resistance to inorganic anions, high selectivity, and broad pH applicability. With the rapid growth of studies on 1O2 in catalysts/PMS systems, it becomes necessary to provide a comprehensive review of its current state. This review highlights recent advancements concerning 1O2 in catalysts/PMS systems, with a primary focus on generation pathways and identification methods. The generation pathways of 1O2 are summarized based on whether (distinguished by the geometric structures of metal species) or not (distinguished by the active sites) the metal element is included in the catalysts. Furthermore, this review thoroughly discusses the influence of metal valence states and metal species with different geometric structures on 1O2 generation. Various potential strategies are explored to regulate the generation of 1O2 from the perspective of catalyst design. Identification methods of 1O2 primarily include electron paramagnetic resonance (EPR), quenching experiments, reaction in D2O solution, and chemical probe tests in catalysts/PMS systems. The principles and applications of these methods are presented comprehensively along with their applicability, possible disagreements, and corresponding solutions. Besides, an identifying procedure on the combination of main identification methods is provided to evaluate the role of 1O2 in catalysts/PMS systems. Lastly, several perspectives for further studies are proposed to facilitate developments of 1O2 in catalysts/PMS systems.
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  • 文章类型: Journal Article
    微生物的快速准确鉴定和抗生素耐药性的研究在经济和工业领域以及医学领域至关重要。增长最快的识别方法之一是光谱方法,包括使用飞行时间分析仪(MALDI-TOFMS)的基质辅助激光电离/解吸,与传统的微生物测定方法相比,它具有许多优点。由于在MALDI-TOFMS分析中使用了多维方法,有可能获得广泛的数据,允许识别微生物,了解它们的相互作用和抗生素耐药机制的分析。此外,文献数据表明样品制备时间和分析时间显着减少的可能性,这将使患者更快地开始治疗。然而,仍然有必要改进识别和补充现有数据库的过程,同时创建新数据库。这篇综述总结了“-组学”方法在MALDITOFMS分析中的应用,包括细菌鉴定和抗生素耐药机制分析。
    The quick and accurate identification of microorganisms and the study of resistance to antibiotics is crucial in the economic and industrial fields along with medicine. One of the fastest-growing identification methods is the spectrometric approach consisting in the matrix-assisted laser ionization/desorption using a time-of-flight analyzer (MALDI-TOF MS), which has many advantages over conventional methods for the determination of microorganisms presented. Thanks to the use of a multiomic approach in the MALDI-TOF MS analysis, it is possible to obtain a broad spectrum of data allowing the identification of microorganisms, understanding their interactions and the analysis of antibiotic resistance mechanisms. In addition, the literature data indicate the possibility of a significant reduction in the time of the sample preparation and analysis time, which will enable a faster initiation of the treatment of patients. However, it is still necessary to improve the process of identifying and supplementing the existing databases along with creating new ones. This review summarizes the use of \"-omics\" approaches in the MALDI TOF MS analysis, including in bacterial identification and antibiotic resistance mechanisms analysis.
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  • 文章类型: Case Reports
    红球菌是一种已知会导致动物和人类感染的病原体,主要是免疫功能低下的患者。在这项工作中描述了一例患有由棒状杆菌引起的血流感染的儿科癌症患者。从血液培养物中分离革兰氏阳性棒。使用生化测试的组合来鉴定目标细菌,MALDI-TOF质谱技术,和16SrRNA序列的分析。此外,使用E检验进行抗菌药物敏感性试验.分离的细菌被鉴定为棒状杆菌。3岁患者成功接受了万古霉素和美罗培南治疗。这是R.Corynebacterioides在诊断患有视网膜母细胞瘤并发展为血流感染的儿科患者中的第一份公开报告。在影响儿科癌症患者的机会性感染因子中,应考虑棒状杆菌。
    Rhodococcus is a pathogen that is known to cause infections in animals and humans, mainly in cases of immunocompromised patients. A case of a pediatric cancer patient suffering from a bloodstream infection caused by Rhodococcus corynebacterioides was described in this work. Gram positive rods were isolated from blood cultures. The target bacterium was identified using a combination of biochemical tests, the MALDI-TOF mass spectrometry technique, and the analysis of the 16S rRNA sequence. Moreover, an antimicrobial susceptibility test was performed using the E-test. The isolated bacterium was identified as R. corynebacterioides. The 3-year-old patient was successfully treated with vancomycin and meropenem. This is the first published report of R. corynebacterioides in a pediatric patient diagnosed with retinoblastoma that developed a bloodstream infection. R. corynebacterioides should be considered among the opportunistic infectious agents affecting pediatric cancer patients.
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  • 文章类型: Journal Article
    近年来,环境中的微塑料污染已成为人们关注的问题。悬浮大气微塑料的运输和沉积在微塑料源和汇的全球联系中起着重要作用。在这次审查中,我们总结了采样装置的最新研究进展,预处理,大气微塑料的鉴定方法。总悬浮颗粒和大气沉积,包括灰尘,降雨,和雪样本,是大气微塑料研究的环境载体。有主动和被动采样方法。预处理取决于样品类型和鉴定方法,包括筛分,消化,密度分离,过滤,和干燥。大气微塑料的测量特征包括粒径分布,形状,颜色,表面形态,和聚合物成分,使用立体显微镜,傅里叶变换红外光谱,扫描电子显微镜,拉曼光谱,和液相色谱-串联质谱。激光直接红外光谱和热化学方法与质谱联用是识别大气微塑料的潜在方法。目前,用于估算大气微塑料排放通量的模型,运输,和沉积处于发展的初始阶段;它们的实施将增强我们对基于模拟和观测数据的全球“微塑料循环”的理解。
    Microplastic pollution in the environment has become a source of concern in recent years. The transport and deposition of suspended atmospheric microplastics play an important role in the global linkage of microplastic sources and sinks. In this review, we summarized recent research progress on sampling devices, pretreatments, and identification methods for atmospheric microplastics. The total suspended particles and atmospheric deposition, including dust, rainfall, and snow samples, are the environmental carriers for atmospheric microplastic studies. There are active and passive sampling methods. Pretreatment depends on sample types and identification methods and includes sieving, digestion, density separation, filtration, and drying. The measured features for atmospheric microplastics include particle size distributions, shapes, colors, surface morphology, and polymer compositions, using stereomicroscopes, Fourier transform infrared spectroscopy, scanning electron microscopy, Raman spectroscopy, and liquid chromatography-tandem mass spectrometry. Laser direct infrared spectroscopy and thermochemical methods coupled with mass spectrometry are potential methods for identifying atmospheric microplastics. Currently, models for estimating the fluxes of atmospheric microplastic emission, transport, and deposition are in the initial stages of development; their implementation will enhance our understanding of the \"microplastic cycle\" globally based on simulated and observed data.
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