iTRAQ technology

iTRAQ 技术
  • 文章类型: Journal Article
    目的:围手术期神经认知障碍(PND)是一组常见的神经系统并发症,通常发生在重大或紧急外科手术后的老年人中。病因尚未完全了解。本研究致力于研究PND发生的新目标和预测方法。
    方法:共229例经尿道前列腺电切术(TURP)联合脊髓和硬膜外镇痛诊断为前列腺增生的老年患者纳入本研究。将患者分为两组,PND组和非PND组,基于Z分数法。根据术前和术中情况保持一致的原则,从每组中随机抽取3例患者进行血清样本采集.采用用于相对和绝对定量的等量异位标签(iTRAQ)蛋白质组学技术来分析和鉴定在来自两组的血清样品中表现出差异表达的蛋白质。对表现出差异表达的蛋白质进行生物信息学分析。
    结果:在PND和非PND组中分析的1101种血清蛋白中,在PND患者中鉴定出8种差异表达蛋白。其中,六种蛋白质显示上调,而两种蛋白质显示下调。对表现出差异表达的蛋白质的进一步生物信息学分析显示,它们主要参与细胞生物学过程。细胞成分形成,以及内吞和吞噬作用此外,发现这些蛋白质具有E3泛素连接酶的RING结构域。
    结论:采用iTRAQ蛋白质组学技术分析了PND患者和非PND患者血清样品中蛋白质表达的变化。这项研究成功地鉴定了两组之间表现出差异表达水平的八种蛋白质。生物信息学分析表明,表现出差异表达的蛋白质主要参与与微管相关的生物过程。研究与神经可塑性和突触形成有关的微管形成过程可能为增强我们对PND的理解和潜在预防提供有价值的见解。
    背景:已注册(ChiCTR2000028836)。日期(20190306)。
    OBJECTIVE: Perioperative neurocognitive disorders (PND) are a group of prevalent neurological complications that often occur in elderly individuals following major or emergency surgical procedures. The etiologies are not fully understood. This study endeavored to investigate novel targets and prediction methods for the occurrence of PND.
    METHODS: A total of 229 elderly patients diagnosed with prostatic hyperplasia who underwent transurethral resection of the prostate (TURP) combined with spinal cord and epidural analgesia were included in this study. The patients were divided into two groups, the PND group and non-PND group, based on the Z-score method. According to the principle of maintaining consistency between preoperative and intraoperative conditions, three patients from each group were randomly chosen for serum sample collection. isobaric tags for relative and absolute quantification (iTRAQ) proteomics technology was employed to analyze and identify the proteins that exhibited differential expression in the serum samples from the two groups. Bioinformatics analysis was performed on the proteins that exhibited differential expression.
    RESULTS: Among the 1101 serum proteins analyzed in the PND and non-PND groups, eight differentially expressed proteins were identified in PND patients. Of these, six proteins showed up-regulation, while two proteins showed down-regulation. Further bioinformatics analysis of the proteins that exhibited differential expression revealed their predominant involvement in cellular biological processes, cellular component formation, as well as endocytosis and phagocytosis Additionally, these proteins were found to possess the RING domain of E3 ubiquitin ligase.
    CONCLUSIONS: The iTRAQ proteomics technique was employed to analyze the variation in protein expression in serum samples from patients with PND and those without PND. This study successfully identified eight proteins that exhibited differential expression levels between the two groups. Bioinformatics analysis indicates that proteins exhibiting differential expression are primarily implicated in the biological processes associated with microtubules. Investigating the microtubule formation process as it relates to neuroplasticity and synaptic formation may offer valuable insights for enhancing our comprehension and potential prevention of PND.
    BACKGROUND: Registered (ChiCTR2000028836). Date (20190306).
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  • 文章类型: Journal Article
    射血分数保留的心力衰竭(HFpEF)是全球范围内的公共卫生问题。由于对HFpEF的病理机制没有统一的认识,因此对HFpEF患者的治疗效果不理想。本研究旨在探讨有效诊断和治疗HFpEF的潜在病理机制。
    将10只成年雄性Dahl盐敏感大鼠(180-200g)分为对照组和模型组。模型组大鼠饲喂高盐饮食(8%NaCl)诱导HFpEF进行比较研究。行为改变,生化参数,并检测大鼠的组织病理学改变。采用iTRAQ技术结合生物信息学分析来研究差异表达蛋白(DEPs)及其在信号通路中的富集。
    超声心动图检测显示LVEF降低,心脏功能受损(P<0.01),LVPWd增加,表明心室壁肥厚(P<0.05),IVRT持续时间延长,E/A比降低,提示模型组大鼠舒张功能障碍(P<0.05)。在两组大鼠中均鉴定出563个DEP,其中243个上调,320个下调。模型组大鼠PPARα信号通路表达下调,PPARα降低最显著(91.2%)(P<0.01),PPARγ明显降低(63.60%)(P<0.05),PPARβ/δ降低(45.33%)(P<0.05)。富集PPAR受体信号通路的DEPs主要与脂肪酸β-氧化、像过氧化物酶体这样的细胞成分,和这样的分子功能作为脂质结合。
    NaCl高盐饮食是增加大鼠HFpEF发生率的因素之一。PPARα,PPARγ和PPARβ/δ可能是HFpEF的靶点。研究结果可为临床治疗HFpEF提供理论依据。
    Heart failure with preserved ejection fraction (HFpEF) is a public health problem worldwide. Treatments for the patients with HFpEF are not satisfactory because there is no unified understanding of the pathological mechanism of HFpEF. This study aims at investigating the potential pathological mechanism for the effective diagnosis and treatment of HFpEF.
    Ten adult male Dahl salt sensitive rats (180-200 g) were divided into control and model groups. The rats in model group were fed with high salt diet (8% NaCl) to induce HFpEF for this comparative study. Behavioral changes, biochemical parameters, and histopathological changes of the rats were detected. iTRAQ technology combined with bioinformatics analysis was employed to study the differentially expressed proteins (DEPs) and their enrichment in signaling pathways.
    Echocardiography detection showed decreased LVEF, indicating impaired cardiac function (P < 0.01), increased LVPWd, indicating ventricular wall hypertrophy (P < 0.05), prolonged duration of IVRT and decreased E/A ratio, indicating diastolic dysfunction (P < 0.05) of the rats in model group. 563 DEPs were identified in the rats of both groups, with 243 up-regulated and 320 down-regulated. The expression of PPAR signaling pathway in the rats of model group was down-regulated, with PPARα most significantly decreased (91.2%) (P < 0.01), PPARγ obviously decreased (63.60%) (P < 0.05), and PPARβ/δ decreased (45.33%) (P < 0.05). The DEPs enriched in PPAR signaling pathway were mainly related to such biological processes as fatty acid beta-oxidation, such cellular components as peroxisome, and such molecular functions as lipid binding.
    NaCl high salt diet is one of the factors to increase the incidence of HFpEF in rats. PPARα, PPARγ and PPAR β/δ might be the targets of HFpEF. The findings may provide a theoretical basis for the treatment of HFpEF in clinical practice.
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  • 文章类型: Journal Article
    目的:分析奥氮平治疗大鼠中缝背核差异表达蛋白,探讨奥氮平治疗早期代谢紊乱的可能机制。
    方法:20只雄性和20只雌性SD大鼠随机均分为奥氮平组和对照组,每日给予奥氮平及生理盐水治疗4周,分别。最后一次治疗后一小时,采用iTRAQ结合液相色谱-串联质谱(LC-MS/MS)对大鼠的中缝背核进行蛋白质组学分析.GO,KEGG通路,COG,进行了差异表达蛋白的途径和蛋白相互作用网络分析.从蛋白质组列表中选择了几个靶基因,以及使用实时实时定量PCR和Western印迹进行相同分组和治疗的另外24只小鼠的背中缝核中的表达水平。
    结果:在奥氮平治疗的小鼠的背中缝核中总共鉴定出214种差异表达蛋白,包括72个未调节和142个下调的蛋白质。GO分析表明,差异表达的蛋白质在细胞过程中富集,生物调节,代谢过程,对刺激的反应,多细胞组织过程,绑定,催化活性,分子功能调节因子和转录调节因子活性。KEGG分析表明,这些蛋白质在流体剪切应力和动脉粥样硬化中富集,血清素能突触,丁酸代谢,甲状腺激素合成与IL-17信号通路.差异表达蛋白Cav1,Hsp90b1,Canx,Gnai1,MAPK9和LOC685513位于蛋白质-蛋白质相互作用网络的节点,与代谢紊乱密切相关。在奥氮平治疗的小鼠中,细胞凋亡负调节因子Hmgcs2的表达,中缝背核显著下调,其中Pla2g4e的表达式,参与5-羟色胺能突触的Slc6a4和Gnai1显着上调。
    结论:在治疗的早期阶段,奥氮平可能通过调节Cav1、Hsp90b1、Canx、中缝背核中的Gnai1、MAPK9、LOC685513(Gng14)和5-HTR2突触相关蛋白。
    OBJECTIVE: To analyze the differentially expressed proteins in the dorsal raphe nucleus of rats treated with olanzapine and explore the possible mechanism of metabolic disorders in the early stage of olanzapine treatment.
    METHODS: Twenty male and 20 female SD rats were both randomized equally into olanzapine group and control group for daily treatment with olanzapine and saline for 4 weeks, respectively. One hour after the last treatment, the dorsal raphe nucleus of the rats was dissected for proteomic analysis using iTRAQ combined with liquid chromatography-tandem mass spectrometry (LC-MS/MS). GO, KEGG pathway, COG, pathways and protein interaction network analyses of the differentially expressed proteins were performed. Several target genes were selected from the proteomic list, and their expression levels in the dorsal raphe nucleus of another 24 mice with identical grouping and treatment using real time real-time quantitative PCR and Western blotting.
    RESULTS: A total of 214 differentially expressed proteins were identified in the dorsal raphe nucleus of olanzapine-treated mice, including 72 unregulated and 142 downregulated proteins. GO analyses showed that the differentially expressed proteins were enriched in cellular process, biological regulation, metabolic process, response to stimulus, multicellular organismal process, bindings, catalytic activity, molecular function regulator and transcription regulator activity. KEGG analysis suggested that these proteins were enriched in fluid shear stress and atherosclerosis, serotonergic synapse, butanoate metabolism, thyroid hormone synthesis and IL-17 signaling pathway. The differentially expressed proteins Cav1, Hsp90b1, Canx, Gnai1, MAPK9, and LOC685513 were located at the nodes of the protein-protein interaction network in close relation with metabolic disorders. In olanzapine-treated mice, the expression of Hmgcs2, a negative regulator of apoptosis, was significantly down-regulated in the dorsal raphe nucleus, where the expressions of Pla2g4e, Slc6a4 and Gnai1 involved in serotonergic synapse were significantly upregulated.
    CONCLUSIONS: In the early stage of treatment, olanzapine may contribute to the occurrence of metabolic disorders in rats by regulating the expressions of Cav1, Hsp90b1, Canx, Gnai1, MAPK9, LOC685513 (Gng14) and 5-HTR2 synapse-related proteins in the dorsal raphe nucleus.
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  • 文章类型: Journal Article
    真空包装的酱羊肚通过高压处理(HPP)和热处理(HT)进行二次巴氏灭菌,并应用iTRAQ技术研究差异表达蛋白(DEPs)。分析显示HPP和HT样品中有484和398个DEP,分别,与没有治疗相比。这些DEP是根据纹理结果排序的,结果表明,这些DEP在不同的生物过程中起作用,具有许多与羊肚质构相关的结构蛋白和蛋白亚基。Westernblot验证的结果与蛋白质组学观察到的蛋白质表达变化一致。生物信息学分析表明,HT后酱羊肚的硬度和胶粘性可能与CNN1和FN1表达的变化有关。TMP表达的变化,FN1,YWHAG,TTN,胶原蛋白同工型,ARPC3可能与羊肚经HPP后弹性和咀嚼性的改善有关。
    Vacuum-packed sauce lamb tripe was subjected to secondary pasteurization by high-pressure processing (HPP) and heat treatment (HT), and iTRAQ technology was applied to investigate the differentially expressed proteins (DEPs). The analysis revealed 484 and 398 DEPs in the HPP and HT samples, respectively, compared with no treatment. These DEPs were sorted by texture results, and it was revealed that these DEPs acted in different biological processes with many structural proteins and protein subunits related to lamb tripe texture. The results verified by Western blot were consistent with the protein expression changes observed by proteomics. The bioinformatics analysis showed that the hardness and gumminess of the sauce lamb tripe after HT might be related to changes in the expression of CNN1 and FN1. The changes in the expression of TMP, FN1, YWHAG, TTN, collagen isoforms, and ARPC3 might be related to the improved springiness and chewiness of lamb tripe after HPP.
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  • 文章类型: Journal Article
    Objective: To study the differential protein and signal pathway related to the impairment of learning and memory ability of offspring caused by chronic stress during pregnancy and explore the possible mechanism. Methods: From July to October 2019, sixteen SPF free female SD rats aged 80-90 days, weighing (200±20) g. Twelve SPF grade male SD rats aged 90-100 days, weighing (220±20) g. After a week of adaptive feeding, the female rats were randomly divided into control group and model group (8 rats in each group) , male rats were divided into control mating group (n=8) and model mating group (n=4) . Chronic unpredictable mild stress (CUMS) model was established and stimulated continuously for 21 days. One day before stress, the first, seventh, fourteenth and 21th day after stress, the blood was collected from the inner canthus vein of the female rats, and the content of corticosterone was determined. Morris water maze test was used to detect the spatial learning and memory ability of offspring rats. The morphological changes of hippocampus were observed by HE and Nissl staining. The proteomic correlation analysis of offspring rats\' hippocampus was performed by isobaric tags for relative and absolute quantification (iTRAQ) technique. Results: Compared with the control group, the content of plasma corticosterone in the model group was significantly higher (F=7.717, P<0.05) , and the model was successfully established. In Morris water maze test, compared with the control offspring group, the escape latency was longer, the average swimming speed was lower, the number of crossing platform was less, and the target quadrant run was shorter in the model offspring group (P<0.05) . The pathological results showed that the morphology of cells in the hippocampal tissue of the model offspring group was irregular, the number of neurons was small, Nissl body was unevenly distributed, the volume was small and the number was small. Mass spectrometry analysis showed that a total of 5065 proteins were screened out in the two offspring groups, and 26 proteins were differentially expressed (P<0.05) , of which 19 proteins were up-regulated and 7 proteins were down regulated. The differential proteins were mainly involved in 23 biological processes, 14 cellular components and 9 molecular functions. Kyoto Encyclopedia of genes and genomes (KEGG) enrichment analysis showed that 57 pathways were enriched, of which 8 signaling pathways were significantly enriched (P<0.05) . There were 5 signaling pathways that might be involved in the impairment of learning and memory ability of offspring, including neuroactive ligand receptor interaction, cGMP-PKG signaling pathway, adhesion and connection, adhesion and connection FoxO signaling pathway and Notch signaling pathway, mainly including tyrosine protein kinase receptor, tyrosine kinase receptor and Notch signaling pathway, and α2A adrenergic receptor, cGMP dependent protein kinase and other differential proteins may be involved in the injury process. Conclusion: The damage of learning and memory ability of offspring may be caused by chronic stress during pregnancy rats. The enriched signal pathway and key differential proteins of proteomics may play an important role in the process of damage.
    目的: 研究大鼠孕期慢性应激致子代学习记忆能力损伤相关的差异蛋白及信号通路,探讨可能的作用机制。 方法: 于2019年7至10月,选择80~90日龄SPF级未曾受孕的雌性SD大鼠16只,体重(200±20)g;90~100日龄SPF级雄性SD大鼠12只,体重(220±20)g。适应性饲养1周后随机分组,雌鼠分为对照组和模型组(各8只);雄鼠分为对照交配组(8只)和模型交配组(4只),正常饲养。建立慢性不可预知温和应激(CUMS)模型,连续刺激21 d。应激前1天,第1、7、14、21天对雌鼠进行内眦静脉取血,测定皮质酮含量。利用Morris水迷宫实验检测子鼠的空间学习记忆能力,通过苏木素-伊红和尼氏染色观察子鼠海马组织形态学变化,采用同位素标记相对和绝对定量(iTRAQ)技术对子鼠海马组织进行蛋白质组学相关分析。 结果: 与对照组比较,模型组雌鼠血浆皮质酮含量明显增高(F=7.717,P<0.05),模型建立成功。与对照子鼠组比较,模型子鼠组逃避潜伏期延长、游泳平均速度降低、跨越平台次数减少、目标象限游程缩短(P<0.05)。模型子鼠组海马组织结构中细胞形态不规则,神经元数量少,尼氏体分布不均匀、体积小、数量少。子鼠组共筛选出5 065个蛋白,差异蛋白共26个(P<0.05),其中上调和下调分别为19、7个。差异蛋白主要参与23种生物学过程、14种细胞组分和9种分子功能。京都基因和基因组百科全书(KEGG)富集分析显示,共富集到57条通路,其中8条信号通路明显富集(P<0.05),可能参与子代学习记忆能力损伤的信号通路有5条,包括神经活性配体-受体相互作用、cGMP-PKG信号通路、黏附连接、FoxO信号通路和Notch信号通路,主要有酪氨酸蛋白激酶受体、α2A肾上腺素能受体、cGMP依赖性蛋白激酶等差异蛋白可能参与损伤过程。 结论: 孕期慢性应激可能导致子代学习记忆能力损伤,蛋白质组学方法所富集的信号通路和筛选的关键差异蛋白可能在损伤过程中起重要作用。.
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  • 文章类型: Journal Article
    Glucose homeostasis is tightly controlled by balance between glucose production and uptake in liver tissue upon energy shortage condition. Altered glucose homeostasis contributes to the pathophysiology of metabolic disorders including diabetes and obesity. Here, we aimed to analyse the change of proteomic profile upon prolonged fasting in mice with isobaric tag for relative and absolute quantification (iTRAQ) labelling followed by liquid chromatography-mass spectrometry (LC/MS) technology. Adult male mice were fed or fasted for 16 hours and liver tissues were collected for iTRAQ labelling followed by LC/MS analysis. A total of 322 differentially expressed proteins were identified, including 189 upregulated and 133 downregulated proteins. Bioinformatics analyses, including Gene Ontology analysis (GO), Kyoto encyclopaedia of genes and genomes analysis (KEGG) and protein-protein interaction analysis (PPI) were conducted to understand biological process, cell component, and molecular function of the 322 differentially expressed proteins. Among 322 hepatic proteins differentially expressed between fasting and fed mice, we validated three upregulated proteins (Pqlc2, Ehhadh and Apoa4) and two downregulated proteins (Uba52 and Rpl37) by western-blotting analysis. In cultured HepG2 hepatocellular cells, we found that depletion of Pqlc2 by siRNA-mediated knockdown impaired the insulin-induced glucose uptake, inhibited GLUT2 mRNA level and suppressed the insulin-induced Akt phosphorylation. By contrast, knockdown of Pqlc2 did not affect the cAMP/dexamethasone-induced gluconeogenesis. In conclusion, our study provides important information on protein profile change during prolonged fasting with iTRAQ- and LC-MS/MS-based quantitative proteomics, and identifies Pqlc2 as a potential regulator of hepatic glucose metabolism and insulin signalling pathway in this process.
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  • 文章类型: Comparative Study
    Lupus nephritis (LN) is one of the major complications of systemic lupus erythematosus (SLE). The specific mechanisms of pathogenesis, aggravation, and remission processes in LN have not been clarified but is of great need in the clinic. Using isobaric tags for relative and absolute quantitation (iTRAQ) technology to screen the functional proteins of LN in mice. Especially under intervention factors of lipopolysaccharide (LPS) and dexamethasone.
    Mrl-lps mice were intervened with LPS, dexamethasone, and normal saline (NS) using intraperitoneal injection, and c57 mice intervened with NS as control. The anti-ANA antibody enzyme-linked immunosorbent assay (ELISA) was used to verify disease severity. Kidney tissue is collected and processed for iTRAQ to screen out functional proteins closely related to the onset and development of LN. Western blot method and rt-PCR (real-time Polymerase Chain Reaction) were used for verification.
    We identified 136 proteins that marked quantitative information. Among them, Hp, Igkv8-27, Itgb2, Got2, and Pcx proteins showed significant abnormal manifestations.
    Using iTRAQ methods, the functional proteins Hp, Igkv8-27, Itgb2, Got2, and Pcx were screened out for a close relationship with the pathogenesis and development of LN, which is worth further study.
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  • 文章类型: Journal Article
    猪链球菌难以治疗,并且是人类和猪的各种感染的原因。它还可以形成生物膜并诱导持续感染。黄连是一种广泛应用于中药的药用植物。虽然黄连对生物膜形成的抑制作用已经在一些研究中进行了研究,黄连抑制猪链球菌生物膜形成的能力和潜在机制尚未见报道。在这项研究中,我们显示了黄连水提取物的亚最低抑制浓度(25和50μgmL-1)(黄连C.Y.Cheng和P.K.Hsiao,从四川省获得)足以抑制生物膜形成,如组织培养板(TCP)方法和扫描电子显微镜所示。使用实时PCR和iTRAQ测量猪链球菌的基因和蛋白质表达。在抗粘附试验中,亚最低抑制浓度(25和50μgmL-1)的黄连水提取物显着抑制猪链球菌粘附。一些基因,比如gapdh,狡猾,和mrp,和蛋白质,如抗原样蛋白,CPS16V,和甲基转移酶H,与未处理的细胞相比,用50μgmL-1的黄连水提取物处理的细胞中的粘附被显着调节。这项研究的结果表明,黄连水提取物中的化合物在抑制猪链球菌细胞的粘附中起重要作用,因此,生物膜的形成。
    Streptococcus suis is difficult to treat and responsible for various infections in humans and pigs. It can also form biofilms and induce persistent infections. Rhizoma Coptidis is a medicinal plant widely used in Traditional Chinese Medicine. Although the inhibitory effects of Rhizoma Coptidis on biofilm formation have been investigated in several studies, the ability of Rhizoma Coptidis to inhibit S. suis biofilm formation and the underlying mechanisms have not yet been reported. In this study, we showed that sub-minimal inhibitory concentrations (25 and 50 μg mL-1) of water extracts of Rhizoma Coptidis (Coptis deltoidea C.Y.Cheng & P.K.Hsiao, obtained from Sichuan Province) were sufficient to inhibit biofilm formation, as shown in the tissue culture plate (TCP) method and scanning electron microscopy. Real-time PCR and iTRAQ were used to measure gene and protein expression in S. suis. Sub-minimum inhibitory concentrations (25 and 50 μg mL-1) of Rhizoma Coptidis water extracts inhibited S. suis adhesion significantly in an anti-adherence assay. Some genes, such as gapdh, sly, and mrp, and proteins, such as antigen-like protein, CPS16V, and methyltransferase H, involved in adhesion were significantly modulated in cells treated with 50 μg mL-1 of Rhizoma Coptidis water extracts compared to untreated cells. The results from this study suggest that compounds in Rhizoma Coptidis water extracts play an important role in inhibiting adhesion of S. suis cells and, therefore, biofilm formation.
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  • 文章类型: Journal Article
    低温是影响矮牵牛生长发育的主要不良环境因子。为了更好地了解矮牵牛植物冷胁迫适应的分子机制,使用iTRAQ技术进行定量蛋白质组学分析,以检测冷胁迫对矮牵牛幼苗中蛋白质表达谱的影响,所述矮牵牛幼苗已经经受2°C持续5天。在定量的2430种蛋白质中,与未受胁迫的对照相比,共发现117种蛋白质在低温胁迫下差异表达。作为一项初步研究,成功注释了44种蛋白质,包括众所周知的和新型的冷响应蛋白。通过整合两个独立的基因本体论(GO)富集分析的结果,发现了七个常见的GO术语,其中“氧化还原过程”是冷响应蛋白中最值得注意的。通过使用亚细胞定位工具Plant-mPLoc预测器,发现多达40.2%的冷反应蛋白组位于叶绿体内,这表明叶绿体蛋白质组受冷胁迫的影响尤为明显。通过实时PCR对11种冷响应蛋白的基因表达分析表明,mRNA水平与各自的蛋白水平没有很强的相关性。抗氧化酶的进一步活性测定显示,经过冷处理的矮牵牛幼苗的变化不同。我们的研究强调了抗氧化机制以及表观遗传因素在冷应激反应调节中的作用。我们的工作为植物对冷胁迫的反应提供了新的见解,并应促进有关确定植物细胞如何应对环境扰动的分子机制的进一步研究。数据已保存至具有标识符PXD002189的ProteomeXchange。
    Low temperature is a major adverse environmental factor that impairs petunia growth and development. To better understand the molecular mechanisms of cold stress adaptation of petunia plants, a quantitative proteomic analysis using iTRAQ technology was performed to detect the effects of cold stress on protein expression profiles in petunia seedlings which had been subjected to 2°C for 5 days. Of the 2430 proteins whose levels were quantitated, a total of 117 proteins were discovered to be differentially expressed under low temperature stress in comparison to unstressed controls. As an initial study, 44 proteins including well known and novel cold-responsive proteins were successfully annotated. By integrating the results of two independent Gene Ontology (GO) enrichment analyses, seven common GO terms were found of which \"oxidation-reduction process\" was the most notable for the cold-responsive proteins. By using the subcellular localization tool Plant-mPLoc predictor, as much as 40.2% of the cold-responsive protein group was found to be located within chloroplasts, suggesting that the chloroplast proteome is particularly affected by cold stress. Gene expression analyses of 11 cold-responsive proteins by real time PCR demonstrated that the mRNA levels were not strongly correlated with the respective protein levels. Further activity assay of anti-oxidative enzymes showed different alterations in cold treated petunia seedlings. Our investigation has highlighted the role of antioxidation mechanisms and also epigenetic factors in the regulation of cold stress responses. Our work has provided novel insights into the plant response to cold stress and should facilitate further studies regarding the molecular mechanisms which determine how plant cells cope with environmental perturbation. The data have been deposited to the ProteomeXchange with identifier PXD002189.
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  • 文章类型: Editorial
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