high-resolution imaging

高分辨率成像
  • 文章类型: Journal Article
    脑膜血管网在神经病学和神经外科中具有重要意义。然而,缺乏完整脑膜血管网的高分辨率成像。在这项工作中,我们开发了一种实用的实验方法,以确保完整的脑膜在形态上展开并固定在琼脂糖凝胶中。借助高亮度聚合物点(Pdots)作为探针,可以对完整的背脑膜上的血管网络进行宏观和详细的成像。脑膜血管沿上矢状窦对称分布,脑膜血管的分布具有一定的层次性。脑膜是从外部到内部的较厚的血管和毛细血管网络。此外,毛细管的直径为3.96±0.89μm。有趣的是,小鼠中枢神经系统的脑膜原始血管成像,直径为4.18±1.18μm,以前没有报道过。值得一提的是,我们发现原位异种脑肿瘤移植导致角膜新生血管的出现和视神经微血管的形态改变。总之,我们的工作为脑膜血管相关疾病的后续研究提供了一种有效的基于Pdots的成像方法,并说明眼睛可以作为预防和诊断脑部疾病的窗口。
    Meningeal vascular network is significant in neurology and neurosurgery. However, high-resolution imaging of intact meningeal vascular network is lacking. In this work, we develop a practical experimental method to ensure that the intact meninges are morphologically unfolded and fixed in an agarose gel. With the help of high-brightness polymer dots (Pdots) as probe, macroscopic and detailed imaging of the vascular network on the intact dorsal meninges can be performed. Meningeal vessels are symmetrically distributed along the superior sagittal sinus, and the distribution of meningeal vessels had a certain degree of hierarchy. The meninges are thicker blood vessels and capillary networks from the outside to the inside. Moreover, the diameter of the capillaries is 3.96 ± 0.89 μm. Interestingly, meningeal primo vessels in the central nervous system of mice is imaged with the diameter of 4.18 ± 1.18 μm, which has not been reported previously. It is worth mentioning that we found that orthotopic xenografts of brain tumors caused the appearance of corneal neovascularization and morphological changes in optic nerve microvessels. In conclusion, our work provides an effective Pdots-based imaging method for follow-up research on meningeal vascular-related diseases, and illustrates that the eye can serve as a window for the prevention and diagnosis of brain diseases.
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  • 文章类型: Journal Article
    单像素成像(SPI)是使用单个光电探测器获得图像的替代方法,与传统的基于矩阵的方法相比,它具有许多优点。然而,与基于矩阵的成像系统相比,大多数实验性SPI实现提供相对较低的分辨率。这里,我们展示了一种简单而有效的实验方法来扩展SPI的分辨率。我们的成像系统利用基于哈达玛矩阵的图案,which,当重塑为可变纵横比时,允许我们提高沿其中一个轴的分辨率,而扫描的模式提高了沿第二轴的分辨率。这项工作为新型成像系统铺平了道路,该系统保留了SPI的优势,并获得了与基于矩阵的系统相当的分辨率。
    Single-pixel imaging (SPI) is an alternative method for obtaining images using a single photodetector, which has numerous advantages over the traditional matrix-based approach. However, most experimental SPI realizations provide relatively low resolution compared to matrix-based imaging systems. Here, we show a simple yet effective experimental method to scale up the resolution of SPI. Our imaging system utilizes patterns based on Hadamard matrices, which, when reshaped to a variable aspect ratio, allow us to improve resolution along one of the axes, while sweeping of patterns improves resolution along the second axis. This work paves the way towards novel imaging systems that retain the advantages of SPI and obtain resolution comparable to matrix-based systems.
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  • 文章类型: Journal Article
    虹膜角膜角(ICA)的高分辨率成像方法将导致对房水流出机制的增强理解,并且在细胞水平上表征小梁网(TM)形态将有助于更好地了解青光眼力学(例如,颗粒青光眼的细胞水平生物力学)。这些信息将转化为巨大的临床价值,导致更明智和定制的治疗选择,并改进了对降低眼内压(IOP)的手术干预措施的监测。鉴于ICA解剖学,产生固有光学切片或3D成像能力的成像模态将有助于TM层的可视化。这篇小型评论探讨了以高分辨率成像ICA的进展。
    High-resolution imaging methods of the iridocorneal angle (ICA) will lead to enhanced understanding of aqueous humor outflow mechanisms and a characterization of the trabecular meshwork (TM) morphology at the cellular level will help to better understand glaucoma mechanics (e.g., cellular level biomechanics of the particulate glaucomas). This information will translate into immense clinical value, leading to more informed and customized treatment selection, and improved monitoring of procedural interventions that lower intraocular pressure (IOP). Given ICA anatomy, imaging modalities that yield intrinsic optical sectioning or 3D imaging capability will be useful to aid in the visualization of TM layers. This minireview examines advancements in imaging the ICA in high-resolution.
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  • 文章类型: Journal Article
    无标记超分辨率(LFSR)成像依赖于纳米级物体中的光散射过程,而无需超分辨率FL显微镜中所需的荧光(FL)染色。本路线图的目标是提出对发展的全面愿景,这个领域最先进的,并讨论了打破LFSR成像的经典衍射极限需要克服的分辨率边界和障碍。本路线图的范围涵盖了先进的干扰检测技术,其中衍射限制的横向分辨率与无与伦比的轴向和时间分辨率相结合,基于将分辨率理解为信息科学问题的具有真正横向超分辨率能力的技术,在使用新颖的结构化照明时,近场扫描,和非线性光学方法,以及基于纳米等离子体的超透镜设计,超材料,变换光学,和微球辅助方法。为此,这个路线图带来了来自物理学和生物医学光学领域的研究人员,这些研究通常是分开发展的。本文的最终目的是基于其物理机制为LFSR成像的当前和未来发展创造一个愿景,并为该领域的系列文章创造一个巨大的开放。
    Label-free super-resolution (LFSR) imaging relies on light-scattering processes in nanoscale objects without a need for fluorescent (FL) staining required in super-resolved FL microscopy. The objectives of this Roadmap are to present a comprehensive vision of the developments, the state-of-the-art in this field, and to discuss the resolution boundaries and hurdles which need to be overcome to break the classical diffraction limit of the LFSR imaging. The scope of this Roadmap spans from the advanced interference detection techniques, where the diffraction-limited lateral resolution is combined with unsurpassed axial and temporal resolution, to techniques with true lateral super-resolution capability which are based on understanding resolution as an information science problem, on using novel structured illumination, near-field scanning, and nonlinear optics approaches, and on designing superlenses based on nanoplasmonics, metamaterials, transformation optics, and microsphere-assisted approaches. To this end, this Roadmap brings under the same umbrella researchers from the physics and biomedical optics communities in which such studies have often been developing separately. The ultimate intent of this paper is to create a vision for the current and future developments of LFSR imaging based on its physical mechanisms and to create a great opening for the series of articles in this field.
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  • 文章类型: Journal Article
    X射线可以深入地穿透生物细胞,因此可以以高空间分辨率检查其内部结构。在这项研究中,X射线相衬成像和层析成像与X射线兼容的光学展宽器和微流体样品递送相结合。使用此设置,单个细胞可以保持悬浮状态,同时在同步加速器上用X射线束检查它们。从记录的全息图中,可以计算与所研究细胞的投影局部电子密度成比例的2D相移图像。从多个这样的投影的断层摄影重建可以获得3D电子密度。因此,可以在水合甚至存活状态下研究细胞,从而避免文物冻结,干燥或包埋,并且原则上也可以经受不同的样品环境或机械应变。这种技术的组合应用于活体以及固定和染色的NIH3T3小鼠成纤维细胞,并研究了束能量对相移的影响。此外,使用3D代数重建方案和专用的数学描述来跟踪捕获的细胞在光学展宽器中的运动以进行多次旋转。
    X-rays can penetrate deeply into biological cells and thus allow for examination of their internal structures with high spatial resolution. In this study, X-ray phase-contrast imaging and tomography is combined with an X-ray-compatible optical stretcher and microfluidic sample delivery. Using this setup, individual cells can be kept in suspension while they are examined with the X-ray beam at a synchrotron. From the recorded holograms, 2D phase shift images that are proportional to the projected local electron density of the investigated cell can be calculated. From the tomographic reconstruction of multiple such projections the 3D electron density can be obtained. The cells can thus be studied in a hydrated or even living state, thus avoiding artifacts from freezing, drying or embedding, and can in principle also be subjected to different sample environments or mechanical strains. This combination of techniques is applied to living as well as fixed and stained NIH3T3 mouse fibroblasts and the effect of the beam energy on the phase shifts is investigated. Furthermore, a 3D algebraic reconstruction scheme and a dedicated mathematical description is used to follow the motion of the trapped cells in the optical stretcher for multiple rotations.
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  • 文章类型: Journal Article
    湿地植物的根茎修复是去除沉积物磷(P)的环境友好策略,其基本原理是根和微生物之间复杂的相互作用。本研究利用高分辨率空间可视化技术和宏基因组测序研究了湿地植物根际中磷的固定化和动员机制。P的空间分布的二维可视化,铁(Fe)和锰(Mn)表明Fe氧化物而不是Mn氧化物的螯合导致不稳定P的消耗,导致Fe吸附的P分数增加。植物改变了根际环境和P循环微生物群落,以从沉积物中动员低可用性的P。通过局部酸化和磷酸酶活性增加,矿物P的溶解和有机P的矿化作用得到增强。分别。微生物P动员也随着P溶解和矿化基因(gcd和phnW)的相对丰度增加和P转运基因的减少而增加(ugpA,ugpB,和坑)根际中的基因。这些过程导致10.04%的无机磷,和15.23%的有机磷,在潜伏期的根际。然而,通过上述过程重新供应P并不能通过根系吸收和矿物固存来补偿根际P的消耗。我们的结果为根际磷循环的机制提供了新的见解,这将有助于为未来的植物修复策略提供信息。
    Rhizoremediation of wetland plants is an environmentally friendly strategy for sediment phosphorous (P) removal, the basic underlying principle of which is the complex interactions between roots and microorganisms. This study investigated the immobilization and mobilization mechanisms of P in the rhizosphere of wetland plants using high-resolution spatial visualization techniques and metagenomic sequencing. Two-dimensional visualization of the spatial distribution of P, iron (Fe) and manganese (Mn) indicated that the sequestration of Fe-oxides rather than Mn-oxides caused the depletion of labile P, resulting in an increase in the Fe-adsorbed P fraction. Plants altered the rhizospheric environments and P-cycling microbial community to mobilize low-availability P from sediments. Mineral P solubilization and organic P mineralization were enhanced by local acidification and increased phosphatase activity, respectively. Microbial P mobilization also increased with increasing relative abundances of P solubilization and mineralization genes (gcd and phnW) and decreasing P transportation genes (ugpA, ugpB, and pit) genes in the rhizosphere. These processes led to the remobilization of 10.04 % of inorganic P, and 15.23 % of organic P, in the rhizosphere during the incubation period. However, the resupply of P via the above processes did not compensate for the depletion of rhizospheric P via root uptake and mineral sequestration. Our results provide novel insights into the mechanisms of rhizospheric P cycling, which will help to inform future phytoremediation strategies.
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  • 文章类型: Journal Article
    在肌肉骨骼成像中,CT用于广泛的适应症,单独或与MRI协同治疗。虽然MRI是评估软组织和骨髓的首选方式,CT擅长高对比度结构的成像,如矿化组织。此外,二十年前,双能CT在临床实践中的引入为光谱成像应用打开了大门。最近,光子计数探测器(PCDs)的出现进一步推进了CT的潜力,至少在理论上。与传统的能量积分探测器(EID)相比,PCDs提供卓越的空间分辨率,减少噪音,和固有的光谱成像能力。这篇综述简要介绍了PCD的技术优势。对于每个技术特性,将讨论在肌肉骨骼成像中的相应应用,包括用于评估骨骼和晶体沉积物的高空间分辨率成像,低剂量应用,如全身CT,以及光谱成像应用,包括晶体沉积物的表征和金属硬件的成像。最后,我们将强调PCD-CT在新兴应用中的潜力,强调需要进一步的临床前和临床验证,以释放其全部临床潜力。
    In musculoskeletal imaging, CT is used in a wide range of indications, either alone or in a synergistic approach with MRI. While MRI is the preferred modality for the assessment of soft tissues and bone marrow, CT excels in the imaging of high-contrast structures, such as mineralized tissue. Additionally, the introduction of dual-energy CT in clinical practice two decades ago opened the door for spectral imaging applications. Recently, the advent of photon-counting detectors (PCDs) has further advanced the potential of CT, at least in theory. Compared to conventional energy-integrating detectors (EIDs), PCDs provide superior spatial resolution, reduced noise, and intrinsic spectral imaging capabilities. This review briefly describes the technical advantages of PCDs. For each technical feature, the corresponding applications in musculoskeletal imaging will be discussed, including high-spatial resolution imaging for the assessment of bone and crystal deposits, low-dose applications such as whole-body CT, as well as spectral imaging applications including the characterization of crystal deposits and imaging of metal hardware. Finally, we will highlight the potential of PCD-CT in emerging applications, underscoring the need for further preclinical and clinical validation to unleash its full clinical potential.
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  • 文章类型: Journal Article
    这项研究为病毒相关研究提供了一种开创性的方法,解决电子显微镜(EM)中的挑战。这种成像技术在探索病毒结构方面至关重要;然而,传统的方法涉及复杂的样品制备和污染的风险。在这里,我们引入了一种克服这些障碍的方法,无需毒性染色程序即可实现高分辨率病毒成像。专注于Begomovirus颗粒,具有经济意义的植物病毒属,我们的图像证实了它们的非包络结构和它们的双二十面体对称性。我们的方法涉及样本收集,净化,和结晶,其次是透射电子显微镜-选择区域电子衍射(TEM-SAED)分析。值得注意的是,这项研究通过标准TEM实现了2D和3D病毒成像,为病毒结构分析和推进病毒相关研究提供了新的途径。卓越的高质量图像源于结晶过程,为改善病毒研究和诊断提供了令人兴奋的可能性,同时消除染色限制。
    This research presents a groundbreaking approach in virus-related research, addressing challenges in electron microscopy (EM). This imaging technique has been crucial in exploring virus structures; however, traditional methods involve complex sample preparations and the risk of contamination. Herein, we introduce an approach that overcomes these obstacles, enabling high-resolution virus imaging without toxic staining procedures. Focusing on Begomovirus particles, an economically significant plant virus genus, our images confirm their non-enveloped structure and their twin icosahedral symmetry. Our methods involve sample collection, purification, and crystallization, followed by transmission electron microscopy - selected area electron diffraction (TEM-SAED) analysis. Notably, this study achieves 2D and 3D virus imaging through standard TEM, providing a new avenue for virus structure analysis and advancing virus-related research. Remarkable high image quality stemmed from the crystallization process, offering exciting possibilities for improving virus research and diagnosis while eliminating staining limitations.
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  • 文章类型: Journal Article
    内溶酶体形态异常是阿尔茨海默病(AD)的早期细胞病理学特征,全基因组关联研究(GWAS)暗示参与内溶酶体网络(ELN)的基因增加了偶发性的风险,晚发性AD(负荷)。ELN病理学和潜在病理生理学的表征是转化AD研究和药物开发的有希望的领域。然而,对AD和老年对照大脑中ELN囊泡的严格研究提出了独特的方法学挑战,部分原因是这些结构的尺寸小以及随后对高分辨率成像的要求。在这里,我们提供了一个详细的协议,用于死后AD脑组织中神经元内体的高分辨率3D形态学定量,使用免疫荧光染色,共焦成像与图像反卷积,和Imaris软件分析管道。为了演示这些方法,我们提供了23名散发性LOAD供体和1名老年非AD对照供体的神经元内体形态数据。这里描述的技术是在一系列AD神经病理学中开发的,以最好地优化这些方法,用于大型队列的未来研究。这些方法在研究队列中的应用将有助于增进对散发性AD中ELN功能障碍和细胞病理学的理解。
    Abnormal endo-lysosomal morphology is an early cytopathological feature of Alzheimer\'s disease (AD) and genome-wide association studies (GWAS) have implicated genes involved in the endo-lysosomal network (ELN) as conferring increased risk for developing sporadic, late-onset AD (LOAD). Characterization of ELN pathology and the underlying pathophysiology is a promising area of translational AD research and drug development. However, rigorous study of ELN vesicles in AD and aged control brains poses a unique constellation of methodological challenges due in part to the small size of these structures and subsequent requirements for high-resolution imaging. Here we provide a detailed protocol for high-resolution 3D morphological quantification of neuronal endosomes in postmortem AD brain tissue, using immunofluorescent staining, confocal imaging with image deconvolution, and Imaris software analysis pipelines. To demonstrate these methods, we present neuronal endosome morphology data from 23 sporadic LOAD donors and one aged non-AD control donor. The techniques described here were developed across a range of AD neuropathology to best optimize these methods for future studies with large cohorts. Application of these methods in research cohorts will help advance understanding of ELN dysfunction and cytopathology in sporadic AD.
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  • 文章类型: Journal Article
    高分辨率磁共振成像(MRI)可以增强病变诊断,预后,和划界。然而,梯度功率和硬件限制禁止记录薄片或sub-1mm分辨率。此外,长扫描时间在临床上是不可接受的。使用统计或分析方法生成的常规高分辨率图像包括捕获复杂,具有复杂图案和结构的高维图像数据。本研究旨在利用尖端的扩散概率深度学习技术来创建一个从低分辨率对应对象生成高分辨率MRI的框架。通过最小化不可预测性和不确定性来改进去噪扩散概率模型(DDPM)。DDPM包括两个进程。正向过程采用马尔可夫链将高斯噪声系统地引入低分辨率MRI图像。在相反的过程中,训练U-Net模型以对前向过程图像进行去噪,并根据其低分辨率对应物的特征生成高分辨率图像。使用在脑肿瘤分割挑战2020(BraTS2020)中收集的来自机构前列腺患者和脑部患者的T2加权MRI图像证明了所提出的框架。对于前列腺数据集,双三次插值模型(双三次),条件生成对抗网络(CGAN),我们提出的DDPM框架将低分辨率图像的噪声质量度量提高了4.4%,5.7%,12.8%,分别。我们的方法将信噪比提高了11.7%,超过Bicubic(9.8%)和CGAN(8.1%)。在BraTS2020数据集中,拟议的框架和Bicubic将分辨率降低的图像的PSNR提高了9.1%和5.8%。方法的多尺度结构相似性指数分别为0.970±0.019,0.968±0.022,0.967±0.023,CGAN,还有Bicubic,分别。本研究探索了一种基于深度学习的扩散概率框架,用于提高MR图像分辨率。这样的框架可以用于通过获得高分辨率图像来改善临床工作流程,而不损失长扫描时间。未来的研究可能会集中在前瞻性地测试该框架在不同临床适应症下的有效性。
    Objective. High-resolution magnetic resonance imaging (MRI) can enhance lesion diagnosis, prognosis, and delineation. However, gradient power and hardware limitations prohibit recording thin slices or sub-1 mm resolution. Furthermore, long scan time is not clinically acceptable. Conventional high-resolution images generated using statistical or analytical methods include the limitation of capturing complex, high-dimensional image data with intricate patterns and structures. This study aims to harness cutting-edge diffusion probabilistic deep learning techniques to create a framework for generating high-resolution MRI from low-resolution counterparts, improving the uncertainty of denoising diffusion probabilistic models (DDPM).Approach. DDPM includes two processes. The forward process employs a Markov chain to systematically introduce Gaussian noise to low-resolution MRI images. In the reverse process, a U-Net model is trained to denoise the forward process images and produce high-resolution images conditioned on the features of their low-resolution counterparts. The proposed framework was demonstrated using T2-weighted MRI images from institutional prostate patients and brain patients collected in the Brain Tumor Segmentation Challenge 2020 (BraTS2020).Main results. For the prostate dataset, the bicubic interpolation model (Bicubic), conditional generative-adversarial network (CGAN), and our proposed DDPM framework improved the noise quality measure from low-resolution images by 4.4%, 5.7%, and 12.8%, respectively. Our method enhanced the signal-to-noise ratios by 11.7%, surpassing Bicubic (9.8%) and CGAN (8.1%). In the BraTS2020 dataset, the proposed framework and Bicubic enhanced peak signal-to-noise ratio from resolution-degraded images by 9.1% and 5.8%. The multi-scale structural similarity indexes were 0.970 ± 0.019, 0.968 ± 0.022, and 0.967 ± 0.023 for the proposed method, CGAN, and Bicubic, respectively.Significance. This study explores a deep learning-based diffusion probabilistic framework for improving MR image resolution. Such a framework can be used to improve clinical workflow by obtaining high-resolution images without penalty of the long scan time. Future investigation will likely focus on prospectively testing the efficacy of this framework with different clinical indications.
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