背景:双胞胎研究表明,遗传效应在手湿疹(HE)中起作用,但其遗传因素尚不清楚.
目的:鉴定和表征与HE相关的遗传基因座,并深入了解HE和特应性皮炎(AD)之间的遗传重叠。
方法:我们使用了来自欧洲人群的Lifelines队列和生物库的问卷调查和基因型数据。我们对HE(2879例和16249例对照)和AD(1706例和17190例对照)进行了发现的全基因组关联研究(GWAS)。我们在HE(1188例和6431例对照)和AD(757例和6747例对照)的独立生命线样本中复制了我们的发现。我们进行了几次GWAS后分析,并在HE结果和独立AD数据之间进行了遗传相关性分析。
结果:HE的两步GWAS,无论是否为AD进行调整,确定了一个独立的基因座20q13.33,可能由许多因果单核苷酸多态性驱动。对于ADGWAS,我们在基因座1q21.3处复制了一个已知的止盈rs61816761(FLG,FLGAS1).我们发现HE和AD(rg=0.65)之间有很强的遗传相关性(p<0.01),无论调整AD(Rg=0.63)。
结论:位点20q13.33与HE相关,HE和AD之间有很大的遗传重叠。
BACKGROUND: Twin studies revealed that genetic effects play a role in hand eczema (HE), but the responsible genetic factors are unknown.
OBJECTIVE: To identify and characterise genetic loci associated with HE and to provide insight into the genetic overlap between HE and atopic dermatitis (AD).
METHODS: We used questionnaire-derived and genotype data from the European population-based Lifelines cohort and biobank. We performed a discovery genome-wide association study (GWAS) of HE (2879 cases and 16 249 controls) and of AD (1706 cases and 17 190 controls). We replicated our findings in an independent Lifelines sample for HE (1188 cases and 6431 controls) and AD (757 cases and 6747 controls). We conducted several post-GWAS analyses and performed genetic correlation analyses between our HE results and independent AD data.
RESULTS: The two-step GWAS of HE, regardless of adjusting for AD, identified one independent locus 20q13.33, likely driven by a number of causal single-nucleotide polymorphisms. For the AD GWAS, we replicated a known stop-gained rs61816761 at locus 1q21.3 (FLG, FLGAS1). We found a strong genetic correlation (p < 0.01) between HE and AD (rg = 0.65), regardless of adjusting for AD (rg = 0.63).
CONCLUSIONS: Locus 20q13.33 is associated with HE, and there is a large genetic overlap between HE and AD.