Deformations introduced during the production of plastic components degrade the accuracy of their 3D geometric information, a critical aspect of object inspection processes. This phenomenon is prevalent among primary plastic products from manufacturers. This work proposes a solution for the deformation estimation of textureless plastic objects using only a single RGB image. This solution encompasses a unique image dataset of five deformed parts, a novel method for generating mesh labels, sequential deformation, and a training model based on graph convolution. The proposed sequential deformation method outperforms the prevalent chamfer distance algorithm in generating precise mesh labels. The training model projects object vertices into features extracted from the input image, and then, predicts vertex location offsets based on the projected features. The predicted meshes using these offsets achieve a sub-millimeter accuracy on synthetic images and approximately 2.0 mm on real images.

The combination of deep learning and the medical field has recently achieved great success, particularly in recommending medicine for patients. However, patients\' clinical records often contain repeated medical information that can significantly impact their health condition. Most existing methods for modeling longitudinal patient information overlook the impact of individual diagnoses and procedures on the patient\'s health, resulting in insufficient patient representation and limited accuracy of medicine recommendations. Therefore, we propose a medicine recommendation model called KEAN, which is based on an attention aggregation network and enhanced graph convolution. Specifically, KEAN can aggregate individual diagnoses and procedures in patient visits to capture significant features that affect patients\' diseases. We further incorporate medicine knowledge from complex medicine combinations, reduce drug-drug interactions (DDIs), and recommend medicines that are beneficial to patients\' health. The experimental results on the MIMIC-III dataset demonstrate that our model outperforms existing advanced methods, which highlights the effectiveness of the proposed method.

Accurate segmentation of tumor regions in automated breast ultrasound (ABUS) images is of paramount importance in computer-aided diagnosis system. However, the inherent diversity of tumors and the imaging interference pose great challenges to ABUS tumor segmentation. In this paper, we propose a global and local feature interaction model combined with graph fusion (GLGM), for 3D ABUS tumor segmentation. In GLGM, we construct a dual branch encoder-decoder, where both local and global features can be extracted. Besides, a global and local feature fusion module is designed, which employs the deepest semantic interaction to facilitate information exchange between local and global features. Additionally, to improve the segmentation performance for small tumors, a graph convolution-based shallow feature fusion module is designed. It exploits the shallow feature to enhance the feature expression of small tumors in both local and global domains. The proposed method is evaluated on a private ABUS dataset and a public ABUS dataset. For the private ABUS dataset, the small tumors (volume smaller than 1 cm3) account for over 50% of the entire dataset. Experimental results show that the proposed GLGM model outperforms several state-of-the-art segmentation models in 3D ABUS tumor segmentation, particularly in segmenting small tumors.

UNASSIGNED: Diffusion-weighted imaging (DWI) is a noninvasive method used for investigating the microstructural properties of the brain. However, a tradeoff exists between resolution and scanning time in clinical practice. Super-resolution has been employed to enhance spatial resolution in natural images, but its application on high-dimensional and non-Euclidean DWI remains challenging.
UNASSIGNED: This study aimed to develop an end-to-end deep learning network for enhancing the spatial resolution of DWI through post-processing.
UNASSIGNED: We proposed a space-customized deep learning approach that leveraged convolutional neural networks (CNNs) for the grid structural domain (x-space) and graph CNNs (GCNNs) for the diffusion gradient domain (q-space). Moreover, we represented the output of CNN as a graph using correlations defined by a Gaussian kernel in q-space to bridge the gap between CNN and GCNN feature formats.
UNASSIGNED: Our model was evaluated on the Human Connectome Project, demonstrating the effective improvement of DWI quality using our proposed method. Extended experiments also highlighted its advantages in downstream tasks.
UNASSIGNED: The hybrid convolutional neural network exhibited distinct advantages in enhancing the spatial resolution of DWI scans for the feature learning of heterogeneous spatial data.

Magnetic resonance fingerprinting (MRF) is a novel imaging framework for fast and simultaneous quantification of multiple tissue properties. Recently, 3D MRF methods have been developed, but the acquisition speed needs to be improved before they can be adopted for clinical use. The purpose of this study is to develop a novel deep learning approach to accelerate 3D MRF acquisition along the slice-encoding direction in k-space. We introduce a graph-based convolutional neural network that caters to non-Cartesian spiral trajectories commonly used for MRF acquisition. We improve tissue quantification accuracy compared with the state of the art. Our method enables fast 3D MRF with high spatial resolution, allowing whole-brain coverage within 5min, making MRF more feasible in clinical settings.

miRNAs are important regulators for many crucial biological processes. Many recent studies have shown that miRNAs are closely related to various human diseases and can be potential biomarkers or therapeutic targets for some diseases, such as cancers. Therefore, accurately predicting miRNA-disease associations is of great importance for understanding and curing diseases. However, how to efficiently utilize the characteristics of miRNAs and diseases and the information on known miRNA-disease associations for prediction is still not fully explored. In this study, we propose a novel computational method for predicting miRNA-disease associations. The proposed method combines the graph convolutional network and the hypergraph convolutional network. The graph convolutional network is utilized to extract the information from miRNA-similarity data as well as disease-similarity data. Based on the representations of miRNAs and diseases learned by the graph convolutional network, we further use the hypergraph convolutional network to capture the complex high-order interactions in the known miRNA-disease associations. We conduct comprehensive experiments with different datasets and predictive tasks. The results show that the proposed method consistently outperforms several other state-of-the-art methods. We also discuss the influence of hyper-parameters and model structures on the performance of our method. Some case studies also demonstrate that the predictive results of the method can be verified by independent experiments.

In spectral CT imaging, the coefficient image of the basis material obtained by the material decomposition technique can estimate the tissue composition, and its accuracy directly affects the disease diagnosis. Although the precision of material decomposition is increased by employing convolutional neural networks (CNN), extracting the non-local features from the CT image is restricted using the traditional CNN convolution operator. A graph model built by multi-scale non-local self-similar patterns is introduced into multi-material decomposition (MMD). We proposed a novel MMD method based on graph edge-conditioned convolution U-net (GECCU-net) to enhance material image quality. The GECCU-net focuses on developing a multi-scale encoder. At the network coding stage, three paths are applied to capture comprehensive image features. The local and non-local feature aggregation (LNFA) blocks are designed to integrate the local and non-local features from different paths. The graph edge-conditioned convolution based on non-Euclidean space excavates the non-local features. A hybrid loss function is defined to accommodate multi-scale input images and avoid over-smoothing of results. The proposed network is compared quantitatively with base CNN models on the simulated and real datasets. The material images generated by GECCU-net have less noise and artifacts while retaining more information on tissue. The Structural SIMilarity (SSIM) of the obtained abdomen and chest water maps reaches 0.9976 and 0.9990, respectively, and the RMSE reduces to 0.1218 and 0.4903 g/cm3. The proposed method can improve MMD performance and has potential applications.

The manual design of esophageal cancer radiotherapy plan is time-consuming and labor-intensive. Automatic planning (AP) is prevalent nowadays to increase physicists\' work efficiency. Because of the intuitiveness of dose distribution in AP evaluation, obtaining reasonable dose prediction provides effective guarantees to generate a satisfactory AP. Existing fully convolutional network-based methods for predicting dose distribution in esophageal cancer radiotherapy plans often capture features in a limited receptive field. Additionally, the correlations between voxel pairs are often ignored. This work modifies the U-net architecture and exploits graph convolution to capture long-range information for dose prediction in esophageal cancer plans. Meanwhile, attention mechanism gets correlations between planning target volume (PTV) and organs at risk, and adaptively learns their feature weights. Finally, a novel loss function that considers features between voxel pairs is used to highlight the predictions. 152 subjects with prescription doses of 50 Gy or 60 Gy are collected in this study. The mean absolute error and standard deviation of conformity index, homogeneity index, and max dose for PTV achieved by the proposed method are 0.036 ± 0.030, 0.036 ± 0.027, and 0.930 ± 1.162, respectively, which outperform other state-of-the-art models. The superior performance demonstrates that our proposed method has great potential for AP generation.

Nowadays, as a crucial component of intelligent transportation systems, traffic flow prediction has received extensive concern. However, most of the existing studies extracted spatial-temporal features with modules that do not differentiate with time and space, and failed to consider spatial-temporal heterogeneities. Furthermore, although previous works have achieved synchronous modeling of spatial-temporal dependencies, the consideration of temporal causality is still lacking in their graph structures. To address these shortcomings, a spatial-temporal heterogeneous and synchronous graph convolution network (STHSGCN) is proposed for traffic flow prediction. To be specific, separate dilated causal spatial-temporal synchronous graph convolutional networks (DCSTSGCNs) for various node clusters are designed to reflect spatial heterogeneity, different dilated causal spatial-temporal synchronous graph convolutional modules (DCSTSGCMs) for diverse time steps are deployed to take account of temporal heterogeneity. In addition, causal spatial-temporal synchronous graph (CSTSG) is proposed to capture temporal causality in spatial-temporal synchronous learning. We further conducted extensive experiments on four real-world datasets, and the results verified the consistent superiority of our proposed approach compared with various existing baselines.

Knowledge graphs represent information in the form of entities and relationships between those entities. Such a representation has multiple potential applications in drug discovery, including democratizing access to biomedical data, contextualizing or visualizing that data, and generating novel insights through the application of machine learning approaches. Knowledge graphs put data into context and therefore offer the opportunity to generate explainable predictions, which is a key topic in contemporary artificial intelligence. In this chapter, we outline some of the factors that need to be considered when constructing biomedical knowledge graphs, examine recent advances in mining such systems to gain insights for drug discovery, and identify potential future areas for further development.