gene transcriptome

  • 文章类型: Journal Article
    大脑结构电路形成了丰富模式的功能同步,支持复杂的认知和行为能力。然而,结构连接体(SC)和功能连接体(FC)的偶联如何发展及其与认知功能和转录组结构的关系仍不清楚.我们使用来自439名年龄在5.7-21.9岁的参与者的多模态磁共振成像数据,通过结合皮质内和皮质外结构连通性来预测功能连通性。表征SC-FC耦合。我们的发现表明,SC-FC耦合在视觉和躯体运动网络中最强,与进化扩张一致,髓鞘含量,和功能主梯度。随着发展的进步,SC-FC偶联表现出由皮质区域增加主导的异质性改变,广泛分布在整个躯体运动中,额顶叶,背侧注意力,和默认模式网络。此外,我们发现SC-FC耦合显着预测一般智力的个体变异性,主要影响额叶和默认模式网络。最后,我们的结果表明,SC-FC偶联的异质性发育与少突胶质细胞相关通路中的基因呈正相关,与星形胶质细胞相关基因呈负相关.这项研究提供了对典型发展中SC-FC耦合的成熟原理的见解。
    Brain structural circuitry shapes a richly patterned functional synchronization, supporting for complex cognitive and behavioural abilities. However, how coupling of structural connectome (SC) and functional connectome (FC) develops and its relationships with cognitive functions and transcriptomic architecture remain unclear. We used multimodal magnetic resonance imaging data from 439 participants aged 5.7-21.9 years to predict functional connectivity by incorporating intracortical and extracortical structural connectivity, characterizing SC-FC coupling. Our findings revealed that SC-FC coupling was strongest in the visual and somatomotor networks, consistent with evolutionary expansion, myelin content, and functional principal gradient. As development progressed, SC-FC coupling exhibited heterogeneous alterations dominated by an increase in cortical regions, broadly distributed across the somatomotor, frontoparietal, dorsal attention, and default mode networks. Moreover, we discovered that SC-FC coupling significantly predicted individual variability in general intelligence, mainly influencing frontoparietal and default mode networks. Finally, our results demonstrated that the heterogeneous development of SC-FC coupling is positively associated with genes in oligodendrocyte-related pathways and negatively associated with astrocyte-related genes. This study offers insight into the maturational principles of SC-FC coupling in typical development.
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  • 文章类型: Preprint
    大脑结构电路形成了丰富模式的功能同步,支持复杂的认知和行为能力。然而,结构连接体(SC)和功能连接体(FC)的偶联如何发展及其与认知功能和转录组结构的关系仍不清楚.我们使用来自439名年龄在5.7至21.9岁的参与者的多模态磁共振成像数据,通过结合皮质内和皮质外结构连通性来预测功能连通性。表征SC-FC耦合。我们的发现表明,SC-FC耦合在视觉和躯体运动网络中最强,与进化扩张一致,髓鞘含量,和功能主梯度。随着发展的进步,SC-FC偶联表现出由皮质区域增加主导的异质性改变,广泛分布在整个躯体运动中,额顶叶,背侧注意力,和默认模式网络。此外,我们发现SC-FC耦合显着预测一般智力的个体变异性,主要影响额叶和默认模式网络。最后,我们的结果表明,SC-FC偶联的异质性发育与少突胶质细胞相关通路中的基因呈正相关,与星形胶质细胞相关基因呈负相关.这项研究提供了对典型发展中SC-FC耦合的成熟原理的见解。
    Brain structural circuitry shapes a richly patterned functional synchronization, supporting for complex cognitive and behavioural abilities. However, how coupling of structural connectome (SC) and functional connectome (FC) develops and its relationships with cognitive functions and transcriptomic architecture remain unclear. We used multimodal magnetic resonance imaging data from 439 participants aged 5.7 to 21.9 years to predict functional connectivity by incorporating intracortical and extracortical structural connectivity, characterizing SC-FC coupling. Our findings revealed that SC-FC coupling was strongest in the visual and somatomotor networks, consistent with evolutionary expansion, myelin content, and functional principal gradient. As development progressed, SC-FC coupling exhibited heterogeneous alterations dominated by an increase in cortical regions, broadly distributed across the somatomotor, frontoparietal, dorsal attention, and default mode networks. Moreover, we discovered that SC-FC coupling significantly predicted individual variability in general intelligence, mainly influencing frontoparietal and default mode networks. Finally, our results demonstrated that the heterogeneous development of SC-FC coupling is positively associated with genes in oligodendrocyte-related pathways and negatively associated with astrocyte-related genes. This study offers insight into the maturational principles of SC-FC coupling in typical development.
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  • 文章类型: Journal Article
    脆性X综合征(FXS)是导致自闭症谱系障碍(ASD)的最常见的单基因疾病。虽然在FXS中观察到显著的性别差异,很少有研究集中在FXS的表型特征以及不同性别的脑病理改变和基因表达的差异上。因此,我们分析了2个月大的雄性和雌性Fmr1KO和C57小鼠在自闭症样行为和树突状脊柱发育方面的性别差异,并在转录组水平评估了机制.结果表明,Fmr1KO小鼠在自闭症样行为和树突状脊柱密度方面表现出性别差异。与女性相比,男性对焦虑有更严重的影响,重复的刻板印象样的行为,和社交,具有较高的树突脊柱密度。此外,基于KEGG途径富集和蛋白-蛋白相互作用(PPI)分析,筛选了2个男性偏倚和5个女性偏倚表达基因.总之,我们的研究结果表明,Fmr1基因的突变导致相关基因的异常表达,并通过影响大脑发育和功能结构来影响Fmr1KO小鼠的性别分化行为表型,并建议未来的研究应侧重于纳入女性受试者,以全面反映FXS在两性中的分化,并制定更精确和有效的治疗策略。
    Fragile X syndrome (FXS) is the most common single gene disorder contributing to autism spectrum disorder (ASD). Although significant sex differences are observed in FXS, few studies have focused on the phenotypic characteristics as well as the differences in brain pathological changes and gene expression in FXS by sex. Therefore, we analyzed sex differences in autism-like behavior and dendritic spine development in two-month-old male and female Fmr1 KO and C57 mice and evaluated the mechanisms at transcriptome level. Results suggest that Fmr1 KO mice display sex differences in autism-like behavior and dendritic spine density. Compared to females, male had more severe effects on anxiety, repetitive stereotype-like behaviors, and socializing, with higher dendritic spine density. Furthermore, two male-biased and five female-biased expressed genes were screened based on KEGG pathway enrichment and protein-protein interaction (PPI) analyses. In conclusion, our findings show mutations in the Fmr1 gene lead to aberrant expression of related genes and affect the sex-differentiated behavioral phenotypes of Fmr1 KO mice by affecting brain development and functional architecture, and suggest future studies should focus on including female subjects to comprehensively reflect the differentiation of FXS in both sexes and develop more precise and effective therapeutic strategies.
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  • 文章类型: Journal Article
    抗生素抗性基因(ARGs)和抗生素抗性细菌(ARB)广泛存在于城市污水处理厂(UWTPs)中。在这项研究中,受体的水平转移模型(假单胞菌。构建了HLS-6)和供体(大肠杆菌DH5α携带RP4质粒),以探索硫化的纳米级零价铁(S-nZVI)对质粒介导的水平转移效率的影响。当S/Fe为0.1时,30min后,1120mg/LS-nZVI对供体和受体细菌的灭活效率分别为2.36±0.03log和3.50±0.17log,分别(初始ARB浓度≈5×107CFU/mL)。治疗时间的影响,S/Fe摩尔比,系统研究了S-nZVI剂量和初始细菌浓度。S-nZVI处理可以增加ARB的细胞外碱性磷酸酶和丙二醛含量,在细菌中引起氧化应激,破坏细胞结构,破坏细胞内DNA。这项研究为减少共轭转移的可能潜在机制提供了证据和见解,例如阻碍细胞膜修复,诱导活性氧的过度产生,抑制SOS响应,降低ARGs和相关转移基因的表达。S-nZVI可以抑制基因接合转移,同时使ARB失活。这些发现为控制抗生素耐药性提供了一种替代方法。
    Antibiotic resistance genes (ARGs) and antibiotic resistant bacteria (ARB) are widespread in urban wastewater treatment plants (UWTPs). In this research, a horizontal transfer model of recipient (Pseudomonas. HLS-6) and donor (Escherichia coli DH5α carries RP4 plasmid) was constructed to explore the effect of sulfidated nanoscale zerovalent iron (S-nZVI) on the efficiency of plasmid-mediated horizontal transfer. When the S/Fe was 0.1, the inactivation efficiency of 1120 mg/L S-nZVI on the donor and recipient bacteria were 2.36 ± 0.03 log and 3.50 ± 0.17 log after 30 min, respectively (initial ARB concentration ≈ 5 ×107 CFU/mL). Effects of treatment time, S/Fe molar ratio, S-nZVI dosage and initial bacterial concentration were systemically studied. S-nZVI treatment could increase the extracellular alkaline phosphatase and malondialdehyde content of the ARB, cause oxidative stress in the bacteria, destroy the cell structure and damage the intracellular DNA. This study provided evidence and insights into possible underlying mechanisms for reducing conjugative transfer, such as hindering cell membrane repair, inducing the overproduction of reactive oxygen species, inhibiting the SOS response, reducing the expression of ARGs and related transfer genes. S-nZVI could inhibit the gene conjugative transfer while inactivating the ARB. The findings provided an alternative method for controlling antibiotic resistance.
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