forensic genetics

法医遗传学
  • 文章类型: Journal Article
    根据洛卡尔的原则,“每个接触都会留下痕迹”,当接触表面时,可以发生驻留在手和触摸物体上的自我和非自我DNA的双向转移。金属通常在法医证据中遇到,用手接触这些表面时,金属颗粒的转移可能与人类DNA的转移一起发生。这项研究提出了一种验证概念方法,用于对金属粒子和触摸DNA进行原始检测,以跟踪供体进行的活动,特别是在与后续表面接触之前评估接触的金属基材。在这个范围内,三名志愿者模拟了接触事件的情景,他首先在铜上,然后在塑料和玻璃表面上参与指纹沉积。在志愿者的手上和次要表面上收集了二十四个短柱,然后通过环境扫描电子显微镜(ESEM)进行分析。仅从铜和塑料表面定量DNA。另外10名志愿者遵循相同的方案,即在铜上沉积,然后在塑料表面上沉积,以仅评估DNA转移。在20个触摸DNA样本上,铜表面产生的DNA量明显较低,范围从0.001到0.129ng/μl,与二次接触的塑料表面相比,范围从0.007到0.362ng/μl。ESEM-EDS分析表明,与铜表面接触后,在志愿者的手上可以大量检测到铜颗粒。含有硅酸盐和铜的颗粒显示在塑料上,而它们只在1/3的玻璃样品中发现。我们的概念验证研究表明,ESEM-EDS分析有可能检测在与铜金属表面接触并沉积在二次接触物品上的过程中转移到志愿者手中的铜颗粒。结果表明,这种原始的ESEM-DNA平行方法可能允许在犯罪现场跟踪DNA转移和金属颗粒,虽然这只是第一步,对更广泛的证据的进一步研究可能有助于解决给定活动水平命题的结果解释。
    According to the principle of Locard \"Every contact leaves a trace\", when touching a surface, a bi-directional transfer of self and non-self-DNA residing on the hands and touched objects can occur. Metals are commonly encountered in forensic evidence and, during hand contact with these surfaces, a transfer of metal particles could occur together with the transfer of human DNA. This study proposes a proof-concept approach for the original detection of metal particles and touch DNA to track the activity performed by a donor and particularly to assess the metallic substrate touched before the contact with a subsequent surface. To this scope, a scenario of contact events was simulated by three volunteers, who participated in fingerprint deposition firstly on copper and then on plastic and glass surfaces. Twenty-four stubs were collected on the hands of volunteers and the secondary surfaces and then analyzed by environmental scanning electron microscopy (ESEM). DNA was quantified only from copper and plastic surfaces. Ten additional volunteers followed the same protocol of deposition on copper and then on plastic surfaces to evaluate DNA transfer only. On 20 touch DNA samples, the copper surface yielded significantly lower DNA amounts, ranging from 0.001 to 0.129 ng/μl, compared to the secondary touched plastic surface, ranging from 0.007 to 0.362 ng/μl. ESEM-EDS analysis showed that copper particles could be abundantly detected on the hands of the volunteers after contact with the copper surface. Particles containing silicates with copper were shown on plastic, while they were only found in 1/3 of samples on glass. Our proof-of-concept study has shown that ESEM-EDS analysis has the potential to detect copper particles transferred to the hands of volunteers during contact with a copper metallic surface and deposited on secondarily touched items. The results suggest that this original ESEM-DNA parallel approach could potentially allow the tracking of DNA transfer and metal particles at a crime scene, although this represents only a first step and further research on a wider casuistry could help to address the interpretation of results given activity level propositions.
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  • 文章类型: Journal Article
    跟着Y染色体在遗传学中的普遍运用,开发了许多市售的Y染色体试剂盒,已验证,并应用于法医学实践。AGCUYNFSY试剂盒是一种新的Y染色体系统,包含44个优选的Y短串联重复序列(Y-STR)和5个常见的Y-InDel。在这项研究中,按照DNA分析方法科学工作组(SWGDAM)的指南对AGCUYNFSY系统进行了验证,以验证其性能.一系列验证实验包括以下参数:基于PCR的研究,敏感性研究,物种特异性研究,稳定性研究,混合研究,精度研究,口吃计算,突变和统计分析,人口研究,以及案例样本和降解研究。结果表明,适当改变PCR扩增条件不影响基因分型;该试剂盒对痕量DNA(0.0625ng)具有良好的灵敏度,多个男性个体的混合物(次要:主要=1:9),和三种PCR抑制剂(超过250μM血色素,250ng/μL腐殖酸和50ng/μL单宁酸)。等位基因大小的最大标准偏差不超过0.1552,反映了系统的高精度。通过这个,还分析了87对DNA确认的父子对的突变。共有18个基因座发生突变,突变率为11.5×10-3至34.5×10-3(95%CI7.2×10-3-97.5×10-3,DYS627和DYF404S1)。在人口研究中,87个无关个体的单倍型多样性为0.9997,辨别能力为0.9885。降解研究表明,UV-C光暴露长达120小时对男性血液和精液-阴道分泌物混合物没有影响。然而,在单个男性唾液以及男性唾液和女性血液混合样品中,紫外线暴露48小时后,无法再获得完整的分型。总的来说,AGCUYNFSYKit灵敏、准确,可在法医学实践中发挥其应用价值。
    With the widespread use of the Y chromosome in genetics, a lot of commercially available Y chromosome kits were developed, validated, and applied to forensic science practice. The AGCU YNFS Y Kit is a new Y chromosome system containing forty-four preferred Y short tandem repeats (Y-STRs) and five common Y-InDels. In this study, the AGCU YNFS Y system was validated to verify its performance by following the guidelines of the Scientific Working Group on DNA Analysis Methods (SWGDAM). A series of validation experiments included the following parameters: PCR-based studies, sensitivity studies, species specificity studies, stability studies, mixture studies, precision studies, stutter calculation, mutation and statistical analysis, population study, and case samples and degradation studies. The results suggested that appropriately changing PCR amplification conditions did not affect genotyping; the kit had good sensitivity for trace amounts of DNA (0.0625 ng), mixtures of multiple male individuals (minor: major = 1: 9), and three PCR inhibitors (more than 250 μM hematin, 250 ng/μL humic acid and 50 ng/μL tannic acid). The maximum standard deviation of allele size did not exceed 0.1552 reflecting the high accuracy of the system. By this, 87 DNA-confirmed pairs of father-son pairs were also analyzed for mutations. A total of 18 loci were mutated, with mutation rates ranging from 11.5×10-3 to 34.5×10-3 (95% CI 7.2×10-3-97.5×10-3, DYS627 and DYF404S1). In the population study, the haplotype diversity of 87 unrelated individuals was 0.9997, and discrimination capacity was 0.9885. Degradation studies have demonstrated that UV-C light exposure for up to 120 hours has no effect on male blood and semen-vaginal secretion mixtures. However, complete typing could no longer be obtained after 48 hours of UV exposure in single male saliva and in male saliva and female blood mixed samples. Collectively, the AGCU YNFS Y Kit is sensitive and accurate and can play its application value in forensic science practice.
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  • 文章类型: Journal Article
    已知身高是由复杂的多基因因素控制的经典遗传性状。到目前为止,已经在整个基因组中发现了许多与身高相关的遗传变异。它也是用于预测法医学外观的外部可见特征(EVC)的代表。当犯罪现场的生物证据不足以识别个人时,可以考虑使用某些遗传变异对法医DNA表型进行检查.在这项研究中,我们的目标是预测\'高度\',代表性的法医表型,当短串联重复序列(STR)分析在生物样品不足的情况下很困难时,使用少量的遗传变异。我们的结果不仅复制了以前的遗传信号,而且还表明,随着两种性别的验证和复制阶段的高度增加,多基因评分(PGS)呈上升趋势。这些结果表明,本研究中建立的SNP集可用于韩国人群的身高估计。具体来说,由于本研究中构建的PGS模型仅针对少量SNP,即使在犯罪现场,它也有助于以最少的生物学证据进行法医DNA表型鉴定。据我们所知,这是第一项利用GWAS信号评估韩国人群身高估测PGS模型的研究.我们的研究提供了对东亚人身高的多基因效应的见解,纳入非亚洲人群的遗传变异。
    Height is known to be a classically heritable trait controlled by complex polygenic factors. Numerous height-associated genetic variants across the genome have been identified so far. It is also a representative of externally visible characteristics (EVC) for predicting appearance in forensic science. When biological evidence at a crime scene is deficient in identifying an individual, the examination of forensic DNA phenotyping using some genetic variants could be considered. In this study, we aimed to predict \'height\', a representative forensic phenotype, by using a small number of genetic variants when short tandem repeat (STR) analysis is hard with insufficient biological samples. Our results not only replicated previous genetic signals but also indicated an upward trend in polygenic score (PGS) with increasing height in the validation and replication stages for both genders. These results demonstrate that the established SNP sets in this study could be used for height estimation in the Korean population. Specifically, since the PGS model constructed in this study targets only a small number of SNPs, it contributes to enabling forensic DNA phenotyping even at crime scenes with a minimal amount of biological evidence. To the best of our knowledge, this was the first study to evaluate a PGS model for height estimation in the Korean population using GWAS signals. Our study offers insight into the polygenic effect of height in East Asians, incorporating genetic variants from non-Asian populations.
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  • 文章类型: Journal Article
    最近,RNA标记已用于鉴定不同类型体液的组织来源。在这里,进行了circRNA和miRNA标记,以检查暴露于不同外部环境条件的血染样品中是否存在外周血(PB),模仿留在犯罪现场的PB样本。将PB样品置于无菌拭子上,然后暴露于不同的高温(37°C,55°C和95°C)和紫外线照射0d,0.5d,1d,3d,7d,超低和低温(-80°C,-20°C,和4°C)持续30天,180d和365d以及不同种类的消毒剂。在上述不同条件下从血液染色样品中提取总RNA,和靶RNA(包括miR16-5p,miR451a,circ0000095,并通过逆转录-定量聚合酶链反应(RT-qPCR)方法检测了两个参考基因RNU6b和18SrRNA)。结果表明,这些选择的RNA标记可以在所有观察点以其独特的降解速率成功测量,在暴露于不同环境条件的降解的血染样品中表现出相对稳定性。这项研究为这些研究的miRNA和circRNA标记在法医学中的应用提供了见解。
    Recently, RNA markers have been used to identify tissue origins of different kinds of body fluids. Herein, circRNA and miRNA markers were carried out to examine the presence or absence of peripheral blood (PB) in bloodstained samples exposed to different external environmental conditions, which mimicked PB samples left at the crime scenes. PB samples were placed on sterile swabs and then exposed to different high temperatures (37°C, 55°C and 95°C) and ultraviolet light irradiation for 0 d, 0.5 d, 1 d, 3 d, and 7 d, ultra-low and low temperatures (-80°C, -20°C, and 4°C) for 30 d, 180 d and 365 d and different kinds of disinfectants. Total RNA was extracted from bloodstained samples under the above different conditions, and the expressions of target RNAs (including miR16-5p, miR451a, circ0000095, and two reference genes RNU6b and 18 S rRNA) were detected by the reverse transcription-quantitative polymerase chain reaction (RT-qPCR) method. Results showed that these selected RNA markers could be successfully measured at all observation points with their unique degradation rates, which exhibited relative stability in degraded bloodstained samples exposed to different environmental conditions. This study provides insights into the applications of these studied miRNA and circRNA markers in forensic science.
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  • 文章类型: Journal Article
    国际法医遗传学学会(ISFG)的DNA委员会已经为短串联重复序列(STR)序列制定了一套命名建议。这些建议遵循了ISFGDNA委员会2016年的考虑,结合在其间几年通过研究和人口研究获得的知识。在保持与当前填充国家DNA数据库的CE数据的向后兼容性的同时,本报告还展望未来,建立建议的最小序列报告范围,以促进实验室间比较,基于序列的等位基因命名的自动化解决方案,一套支持生物信息学发展的资源,表征新STR基因座的指导,以及将STR序列和其他新标记物纳入调查数据库的考虑因素。
    The DNA Commission of the International Society for Forensic Genetics (ISFG) has developed a set of nomenclature recommendations for short tandem repeat (STR) sequences. These recommendations follow the 2016 considerations of the DNA Commission of the ISFG, incorporating the knowledge gained through research and population studies in the intervening years. While maintaining a focus on backward compatibility with the CE data that currently populate national DNA databases, this report also looks to the future with the establishment of recommended minimum sequence reporting ranges to facilitate interlaboratory comparisons, automated solutions for sequence-based allele designations, a suite of resources to support bioinformatic development, guidance for characterizing new STR loci, and considerations for incorporating STR sequences and other new markers into investigative databases.
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  • 文章类型: Journal Article
    在法医调查中,识别体液的类型可以在活动水平上解释生物学证据。在过去的二十年里,重要的研究工作集中在开发用于此目的的分子方法上。microRNAs(miRNAs)由于其组织特异性表达而具有很大的前景,丰度,缺乏剪接变体,相对稳定。尽管最初的发现很有希望,在整个研究中实现一致的结果仍然具有挑战性,强调了原始研究和复制研究的必要性。为了解决这个问题,我们选择了18个miRNA候选物,并在法医病例中常见的6种体液中进行了测试:外周血,经血,唾液,精液,阴道分泌物,和皮肤。采用逆转录定量PCR分析,我们确认了八个候选miRNA(miR-144-3p,miR-451a,miR-205-5p,miR-214-3p,miR-888-5p,miR-891a-5p,miR-193b-3p,miR-1260b)具有高组织特异性和四个(miR-203a-3p,miR-141-3p,miR-200b-3p,miR-4286)具有较小的辨别能力,但仍有助于体液分化。通过主成分分析和层次聚类,一组12个miRNAs成功区分了所有体液,包括经血和阴道分泌物中唾液的区别。总之,我们的结果提供了额外的数据,支持在法医学背景下使用一小组miRNA预测常见体液.需要收集大量人口数据以开发体液预测模型并评估其准确性。
    In forensic investigations, identifying the type of body fluid allows for the interpretation of biological evidence at the activity level. Over the past two decades, significant research efforts have focused on developing molecular methods for this purpose. MicroRNAs (miRNAs) hold great promise due to their tissue-specific expression, abundance, lack of splice variants, and relative stability. Although initial findings are promising, achieving consistent results across studies is still challenging, underscoring the necessity for both original and replication studies. To address this, we selected 18 miRNA candidates and tested them on 6 body fluids commonly encountered in forensic cases: peripheral blood, menstrual blood, saliva, semen, vaginal secretion, and skin. Using reverse transcription quantitative PCR analysis, we confirmed eight miRNA candidates (miR-144-3p, miR-451a, miR-205-5p, miR-214-3p, miR-888-5p, miR-891a-5p, miR-193b-3p, miR-1260b) with high tissue specificity and four (miR-203a-3p, miR-141-3p, miR-200b-3p, miR-4286) with lesser discrimination ability but still contributing to body fluid differentiation. Through principal component analysis and hierarchical clustering, the set of 12 miRNAs successfully distinguished all body fluids, including the challenging discrimination of blood from menstrual blood and saliva from vaginal secretion. In conclusion, our results provide additional data supporting the use of a small set of miRNAs for predicting common body fluids in forensic contexts. Large population data need to be gathered to develop a body fluid prediction model and assess its accuracy.
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  • 文章类型: Journal Article
    利用木材树种和种群分配的遗传数据是打击非法木材贸易的有力工具,但是从木材中提取DNA的挑战阻碍了遗传学作为供应链管理工具的常规使用。为了克服这些挑战,我们探索了聚焦超声提取(FUSE)从木材中快速释放DNA的可行性。使用高压超声波脉冲,保险丝产生空化气泡云,将样品分解成无细胞碎片,导致DNA的机械释放。在这项工作中,将FUSE应用于白橡木(Quercusalba)木材刨花,以首次测试使用FUSE提取木材DNA的可行性。结果表明,FUSE处理分解了组织样品并释放了大量的DNA。经过五分钟的组织处理DNA量为0.21±0.02ng/mg,0.99±0.32ng/mg,和0.14±0.01ng/mg,从培养基中释放出来,粗糙,和组合剃须组,分别。matK和rbcL叶绿体基因内区域的扩增和测序证实,用FUSE制备的DNA质量适合PCR和短读取测序应用。总的来说,这些结果表明,FUSE可以作为DNA样品制备方法,能够在常规提取方法所需的一小部分时间内从木材中释放出高质量的DNA。基于FUSE的DNA释放效率的提高,正在进行的工作旨在将这项技术开发到便携式系统中,该系统可用于快速制备木材样品以进行遗传物种鉴定。
    The use of genetic data for timber species and population assignment is a powerful tool for combating the illegal timber trade, but the challenges of extracting DNA from timber have prevented the routine use of genetics as a supply chain management tool. To overcome these challenges, we explored the feasibility of focused ultrasound extraction (FUSE) for rapid DNA release from timber. Using high-pressure ultrasound pulses, FUSE generates a cavitation bubble cloud that disintegrates samples into acellular debris, resulting in the mechanical release of DNA. In this work, FUSE was applied to white oak (Quercus alba) timber shavings to test the feasibility of using FUSE for timber DNA extraction for the first time. Results showed that FUSE processing disintegrated the tissue samples and released significant quantities of DNA. After five minutes of tissue processing DNA quantities of 0.21 ± 0.02 ng/mg, 0.99 ± 0.32 ng/mg, and 0.14 ± 0.01 ng/mg, were released from medium, coarse, and combination shaving groups, respectively. Amplification and sequencing of regions within the matK and rbcL chloroplast genes confirmed that the quality of DNA prepared with FUSE was suitable for PCR and short-read sequencing applications. Overall, these results show that FUSE can serve as a DNA sample preparation method capable of releasing high-quality DNA from timber in a fraction of the time required by conventional extraction methods. Based on the improved efficiency of DNA release with FUSE, ongoing work aims to develop this technology into portable systems that can be used to rapidly prepare timber samples for genetic species identification.
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  • 文章类型: Journal Article
    法医DNA消除数据库的建立代表了法医学的关键进步,旨在简化区分犯罪现场发现的DNA和参与调查过程的个人的DNA的过程,如执法人员和法医实验室工作人员。在后续阶段,一旦其管理员和其他利益相关者熟悉数据库,他们积累了足够的经验,将数据库扩展到包括消防员在内的急救人员的可能性,护理人员,紧急医疗技术人员,和其他紧急服务人员-可以考虑。管理这些数据库的主要挑战包括收集样本的理由,确保样品和配置文件的完整性,随着保留的持续时间,访问数据库,以及在数据库中找到匹配项时遵循的协议。本文概述了匈牙利的概念和详细的立法框架,2022年引入了法医DNA消除数据库。
    The inception of forensic DNA elimination database represents a pivotal advancement in forensic science, aiming to streamline the process of distinguishing between DNA found at crime scenes and that of individuals involved in the investigation process, such as law enforcement personnel and forensic lab staff. In subsequent phases, once familiarity with the database is achieved by its administrators and other stakeholders, and they have accrued sufficient experience, the possibility of expanding the database to encompass first responders-including firefighters, paramedics, emergency medical technicians, and other emergency services personnel-can be contemplated. Key challenges in managing these databases encompass the grounds for collecting samples, ensuring the integrity of both samples and profiles, along with the duration of retention, access to the database, and the protocols to follow when a match is found in the database. This paper outlines the conceptual and detailed legislative framework in Hungary, where the forensic DNA elimination database was introduced in 2022.
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  • 文章类型: Journal Article
    国家法医DNA数据库是很有价值的调查工具,有可能提高刑事调查的效力。近年来,他们不受限制的扩张引发了令人不安的道德问题,需要密切关注。DNA数据库扩张威胁到隐私权,不歧视,平等,会破坏公众对政府的信任。这篇文章依赖于法医DNA数据库的国际制图研究的数据来记录这些数据库的扩展,强调他们提出的道德问题,并为更负责任地使用此基础架构提出关键建议。
    National forensic DNA databases are a valuable investigative tool, that have the potential to increase the efficacy of criminal investigations. Their unfettered expansion in recent years raises unsettling ethical issues that require close attention. DNA database expansion threatens the rights to privacy, non-discrimination, and equality, and can undermine public trust in government. This perspective piece relies on data from an international mapping study of Forensic DNA Databases to document the expansion of these databases, highlight the ethical issues they raise, and propose key recommendations for more responsible use of this infrastructure.
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  • 文章类型: Editorial
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