eCRF

eCRF
  • 文章类型: Journal Article
    背景:为大型多中心研究提供用户友好的电子数据收集工具是获得高质量研究数据的关键。研究电子数据捕获(REDCap)是为建立具有集成图形用户界面的研究数据库而开发的软件解决方案,用于电子数据输入。瑞士母婴HIV队列研究(MoCHiV)是一项纵向队列研究,可追溯到1980年代初,约有200万个数据条目。直到2022年,MoCHiV的数据收集都是基于纸张的。
    目的:本研究的目的是为报告MoCHiV数据的医师和研究护士提供电子数据输入的用户友好的图形界面。
    方法:MoCHiV收集感染艾滋病毒的妇女和感染艾滋病毒的母亲所生的孩子的产科事件的信息。直到2022年,MoCHiV数据都存储在OracleSQL关系数据库中。在这个项目中,R和REDCap用于开发MoCHiV的电子数据输入平台,并迁移已收集的数据。
    结果:为MoCHiV提供电子数据输入选项的关键步骤是(1)设计,(2)数据清理和格式化,(3)迁移和合规,和(4)附加功能。第一步,数据库结构在REDCap中定义,包括主键和外键的规范,研究变量的定义,和问题的层次结构(称为“分支逻辑”)。第二步,存储在Oracle中的数据经过清理和格式化,以符合定义的数据库结构。系统数据检查可确保符合所有分支逻辑和分类变量级别。REDCap特定的变量和用于在REDCap中启用关系数据结构的重复事件的编号是使用R生成的。在第三步中,将数据导入REDCap,然后与原始数据进行系统比较。在最后一步,附加功能,例如数据访问组,重定向,和总结报告,进行整合,以方便多中心MoCHiV研究中的数据输入。
    结论:通过组合不同的软件工具-OracleSQL,R,和REDCap-建立一个系统的数据清理管道,格式化,比较,我们能够将多中心纵向队列研究从OracleSQL迁移到REDCap.REDCap提供了一种灵活的方式来开发定制的研究设计,即使在具有不同研究臂的纵向研究的情况下(即,产科事件,女人,和母子对)。然而,REDCap不提供用于在数据导入之前预处理大型数据集的内置工具。需要额外的软件(例如,R)进行数据格式化和清理,实现预定义的REDCap数据结构。
    BACKGROUND: Providing user-friendly electronic data collection tools for large multicenter studies is key for obtaining high-quality research data. Research Electronic Data Capture (REDCap) is a software solution developed for setting up research databases with integrated graphical user interfaces for electronic data entry. The Swiss Mother and Child HIV Cohort Study (MoCHiV) is a longitudinal cohort study with around 2 million data entries dating back to the early 1980s. Until 2022, data collection in MoCHiV was paper-based.
    OBJECTIVE: The objective of this study was to provide a user-friendly graphical interface for electronic data entry for physicians and study nurses reporting MoCHiV data.
    METHODS: MoCHiV collects information on obstetric events among women living with HIV and children born to mothers living with HIV. Until 2022, MoCHiV data were stored in an Oracle SQL relational database. In this project, R and REDCap were used to develop an electronic data entry platform for MoCHiV with migration of already collected data.
    RESULTS: The key steps for providing an electronic data entry option for MoCHiV were (1) design, (2) data cleaning and formatting, (3) migration and compliance, and (4) add-on features. In the first step, the database structure was defined in REDCap, including the specification of primary and foreign keys, definition of study variables, and the hierarchy of questions (termed \"branching logic\"). In the second step, data stored in Oracle were cleaned and formatted to adhere to the defined database structure. Systematic data checks ensured compliance to all branching logic and levels of categorical variables. REDCap-specific variables and numbering of repeated events for enabling a relational data structure in REDCap were generated using R. In the third step, data were imported to REDCap and then systematically compared to the original data. In the last step, add-on features, such as data access groups, redirections, and summary reports, were integrated to facilitate data entry in the multicenter MoCHiV study.
    CONCLUSIONS: By combining different software tools-Oracle SQL, R, and REDCap-and building a systematic pipeline for data cleaning, formatting, and comparing, we were able to migrate a multicenter longitudinal cohort study from Oracle SQL to REDCap. REDCap offers a flexible way for developing customized study designs, even in the case of longitudinal studies with different study arms (ie, obstetric events, women, and mother-child pairs). However, REDCap does not offer built-in tools for preprocessing large data sets before data import. Additional software is needed (eg, R) for data formatting and cleaning to achieve the predefined REDCap data structure.
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  • 文章类型: Journal Article
    随着网络技术的广泛普及,专用电子病例报告表(eCRF)成为收集患者数据的主要工具.这项工作的重点是在eCRF设计的各个方面彻底考虑数据质量,具有多个验证步骤的结果,应该为数据采集的每个步骤提供勤奋和多学科的方法。这个目标影响到系统设计的各个方面。
    With the wide diffusion of web technology, dedicated electronic Case Report Forms (eCRFs) became the main tool for collecting patient data. The focus of this work is to thoroughly consider the data quality in every aspect of the design of the eCRF, with the result of having multiple steps of validation that should produce a diligent and multidisciplinary approach towards every step of data acquisition. This goal affects every aspect of the system design.
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  • 文章类型: Journal Article
    患者报告的结果是直接从患者那里收集的关于健康状况和健康相关生活质量的信息。本出版物中的数据包含2016年11月至2021年3月在柏林Charité大学乳腺癌中心进行的真实测量对患者报告结果(PRO)的首次评估。在基线(治疗开始前),1727例早期乳腺癌患者,导管原位癌(DCIS),纤维腺瘤,和其他乳腺疾病作为临床常规的一部分在数字PRO系统中注册。患者的社会人口统计数据,病史,临床变量,本出版物提供了EORTCQLQ-C30和EORTCQLQ-BR23的原始分数。该数据集可以用作临床护理环境中或乳腺疾病临床研究中的PRO的参考,并有助于讨论评分值的解释。此外,患者社会人口统计数据之间的关联,临床变量,和PRO数据在基线可以进一步分析。
    Patient-reported outcomes are information about health status and health-related quality of life collected directly from patients. The data in this publication contain the first assessment of patient-reported outcomes (PROs) from real-life measurements in the breast cancer center at Charité - Universitätsmedizin Berlin between November 2016 and March 2021. At baseline (before the start of treatment), 1727 ambulatory patients with early breast cancer, ductal carcinoma in situ (DCIS), fibroadenoma, and other breast diseases were registered in the digital PRO-system as part of clinical routine. Patients\' sociodemographic data, medical history, clinical variables, and raw scores of the EORTC QLQ-C30 and EORTC QLQ-BR23 are provided in this publication. This dataset can be used as a reference for PROs in a clinical care setting or in clinical studies with breast diseases and contribute to the discussion about the interpretation of score values. Furthermore, the association between patients\' sociodemographic data, clinical variables, and PRO data at baseline can be analysed further.
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  • 文章类型: Journal Article
    肺孢子虫肺炎(PJP)是一种机会性真菌感染,可能会影响免疫抑制患者。为了提高PJP的诊断准确性,促进整个欧洲的数据收集以可靠地评估PJP诊断测试的性能对于改善发展为这种严重疾病的危重患者的护理至关重要.由于几家欧洲医院在编制专用电子病例报告表(eCRF)方面的贡献,可以收集如此大的数据。这项工作的主要重点是在编译和随后的记录验证中创建具有高人体工程学的界面。
    Pneumocystis jirovecii pneumonia (PJP) is an opportunistic fungal infection that may affect patients with immunosuppression. In order to improve the diagnosis accuracy for PJP, facilitating the collection of data across Europe to reliably assess the performance of diagnostic tests for PJP is essential to improve the care of critically ill patients developing this severe condition. Such large data can be collected thanks to the contribution of several European hospitals in the compilation of a dedicated electronic Case Report Form (eCRF). The main focus of this work is to create an interface with high ergonomics both in the compilation and in the subsequent validation of the records.
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  • 文章类型: Journal Article
    平台试验使用的信息系统应处理未预定义的更改。不幸的是,大多数现有临床数据管理系统(CDMS)的技术架构不支持将变更纳入正在进行的试验.适应性临床试验需要先进的架构解决方案设置,以实现适应性临床试验操作所需的生物标志物分层和富集策略。这篇简短的论文介绍了基于微服务的架构解决方案,该解决方案用于运行和支持自适应RECORDS-Trial。
    Information systems used by platform trials should handle changes that are not predefined. Unfortunately, the technical architecture of most existing clinical data management systems (CDMS) do not support changes to be incorporated into an ongoing trial. Adaptive clinical trials need advanced architectural solutions setup to enable biomarker stratification and enrichment strategy necessary for the adaptive clinical trial operation. This short paper presents the microservices-based architecture solution that is used to run and support the adaptive RECORDS-Trial.
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  • 文章类型: Journal Article
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  • 文章类型: Journal Article
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  • 文章类型: Journal Article
    Semantic interoperability of clinical data is essential to preserve its meaning and intent when the data is exchanged, re-used or integrated with other data. Achieving semantic operability requires the use of a communication standard, such as HL7, as well as (functional) information standards. Manually mapping clinical data to a medical thesaurus, such as SNOMED CT, is complicated and requires expert knowledge of both the dataset, including its context, and the thesaurus. As an alternative, the (re-)use of codebooks, data definitions which may already have been mapped to a thesaurus, can be a viable approach. We\'ve developed the iCRF Generator, a Java program that can generate the core of an interoperable electronic case report form (iCRF) for several of the major electronic data capture systems (EDCs). To build their CRFs, users can select one or more items from established codebooks, available from an online system called ART-DECOR. By providing an easy to use method to create CRFs for multiple EDCs based on the same codebooks, interoperability can be more easily attained.
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  • 文章类型: Journal Article
    在大多数研究项目预算中,员工和IT基础架构限制了资源。特别是对于小规模注册和队列研究,专业的IT支持和商业电子数据捕获系统过于昂贵。因此,这些项目使用简单的本地方法(例如Excel)进行数据捕获,而不是中央数据管理,包括基于Web的数据捕获和适当的研究数据库。这导致手动过程合并,分析和,如果可能,假名化不同研究地点的研究数据。
    要支持多站点数据捕获,小范围研究项目中的存储和分析,在MOSAIC项目中对相应的需求进行了分析。根据确定的要求,工具箱的研究被开发作为一个灵活的软件解决方案的各种研究方案。此外,工具箱通过自动执行必要的程序来促进研究数据和元数据的数据集成。此外,工具箱模块允许集成设备数据。此外,通过仅使用假名存储医疗数据来分离个人身份信息和医疗数据,确保符合数据保护法规。然后可以以SPSS格式导出这些假名数据,以使科学家能够准备报告和分析。研究工具箱于2016年在德国烧伤登记处成功试点,为54个研究地点的4350例烧伤病例提供了文献记录。研究工具箱可以从项目网站免费下载,并由于使用Docker技术而自动安装。
    In most research projects budget, staff and IT infrastructures are limiting resources. Especially for small-scale registries and cohort studies professional IT support and commercial electronic data capture systems are too expensive. Consequently, these projects use simple local approaches (e.g. Excel) for data capture instead of a central data management including web-based data capture and proper research databases. This leads to manual processes to merge, analyze and, if possible, pseudonymize research data of different study sites.
    To support multi-site data capture, storage and analyses in small-scall research projects, corresponding requirements were analyzed within the MOSAIC project. Based on the identified requirements, the Toolbox for Research was developed as a flexible software solution for various research scenarios. Additionally, the Toolbox facilitates data integration of research data as well as metadata by performing necessary procedures automatically. Also, Toolbox modules allow the integration of device data. Moreover, separation of personally identifiable information and medical data by using only pseudonyms for storing medical data ensures the compliance to data protection regulations. This pseudonymized data can then be exported in SPSS format in order to enable scientists to prepare reports and analyses.
    The Toolbox for Research was successfully piloted in the German Burn Registry in 2016 facilitating the documentation of 4350 burn cases at 54 study sites. The Toolbox for Research can be downloaded free of charge from the project website and automatically installed due to the use of Docker technology.
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    文章类型: Journal Article
    目的:开发了OpenClinica输入完成(OIC),以提高在OpenClinica®中的eCRF中输入药物的效率。该研究的目的是评估对效率和数据质量以及可用性的影响。
    方法:20名参与者被要求用新工具用手输入15种药物。
    结果:平均输入时间从16:12m减少到3:59m。300个手动输入的药物数据集中的31个(10%)具有一个或多个错误,而300个(3.3%)数据集中的10个具有OIC输入。
    结论:OIC能够提高效率和数据质量。我们得出的结论是,电子病例报告表格(eCRF)系统中图形用户界面的新添加内容应在研究项目中使用之前进行验证。
    OBJECTIVE: Openclinica Input Completion (OIC) was developed to increase the efficiency to enter drugs in eCRF in OpenClinica®. The aim of the study was to evaluate the impact on efficiency and data quality as well as usability.
    METHODS: 20 participants were asked to input 15 drugs with the new tool and by hand.
    RESULTS: The mean input time got decreased from 16:12m to 3:59m. 31 of 300 (10%) of manual entered medication data sets had one or more errors versus 10 of 300 (3,3%) data sets entered with OIC.
    CONCLUSIONS: OIC was able to increase efficiency and data quality. We conclude that new additions to the graphical user interface in electronical Case-Report-Form (eCRF) systems should be validated before usage in research projects.
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