胚胎温度对脊椎动物的肌肉表型有持久的影响,涉及复杂的分子机制,包括蛋白质编码和非编码基因。环状RNA(circularRNAs,circRNAs)是一类在各种生物过程中发挥重要作用的调节RNA,但是可变的热条件对circRNA转录组的影响及其对肌肉生长可塑性的长期影响仍未被研究。为了填补这一知识空白,我们对经历不同胚胎温度(24°C,28°C和32°C),然后在普通温度(28°C)下饲养4个月。与在28°C和24°C饲养的胚胎相比,尼罗罗非鱼胚胎在32°C下表现出更快的发育和随后更高的长期生长。下一代测序数据显示,在所有温度组中共有5,141个独特的circRNAs,其中1,604、1,531和1,169个circRNAs仅在24°C中发现,28°C和32°C组,分别。其中,与28°C组相比,circNexn在24°C组中表现出1.7倍(log2)的上调,在32°C组中表现出1.3倍(log2)的上调。相反,与28°C和32°C对应物相比,24°C组中的cirtTN和circtTN_b下调。此外,发现这些差异表达的circRNAs与MyomiRs有多种相互作用,强调他们作为有希望的候选人在肌肉生长可塑性的背景下进行进一步研究的潜力。一起来看,我们的发现提供了新的见解的分子机制,可能作为肌肉生长可塑性的基础,以响应鱼的热变化,在气候变化的背景下具有重要意义,渔业和水产养殖。
Embryonic temperature has a lasting impact on muscle phenotype in vertebrates, involving complex molecular mechanisms that encompass both protein-coding and non-coding genes. Circular RNAs (circRNAs) are a class of regulatory RNAs that play important roles in various biological processes, but the effect of variable thermal conditions on the circRNA transcriptome and its long-term impact on muscle growth plasticity remains largely unexplored. To fill this knowledge gap, we performed a transcriptomic analysis of circRNAs in fast muscle of Nile tilapia (Oreochromis niloticus) subjected to different embryonic temperatures (24°C, 28°C and 32°C) and then reared at a common temperature (28°C) for 4 months. Nile tilapia embryos exhibited faster development and subsequently higher long-term growth at 32°C compared to those reared at 28°C and 24°C. Next-generation sequencing data revealed a total of 5,141 unique circRNAs across all temperature groups, of which 1,604, 1,531, and 1,169 circRNAs were exclusively found in the 24°C, 28°C and 32°C groups, respectively. Among them, circNexn exhibited a 1.7-fold (log2) upregulation in the 24°C group and a 1.3-fold (log2) upregulation in the 32°C group when compared to the 28°C group. Conversely, circTTN and circTTN_b were downregulated in the 24°C groups compared to their 28°C and 32°C counterparts. Furthermore, these differentially expressed circRNAs were found to have multiple interactions with myomiRs, highlighting their potential as promising candidates for further investigation in the context of muscle growth plasticity. Taken together, our findings provide new insights into the molecular mechanisms that may underlie muscle growth plasticity in response to thermal variation in fish, with important implications in the context of climate change, fisheries and aquaculture.