community-acquired pneumonia

社区获得性肺炎
  • 文章类型: Journal Article
    先前的研究表明,白细胞介素-2(IL-2)在肺部疾病的病理和生理过程中发挥重要作用。然而,IL-2在社区获得性肺炎(CAP)中的作用尚不确定.通过一项前瞻性队列研究,本研究将探讨CAP患者血清IL-2水平与严重程度及预后的相关性。包括267例CAP患者。获得血液样品。采用酶联免疫吸附试验(ELISA)检测血清IL-2水平。提取人口统计学特征和临床特征。CAP患者血清IL-2随着严重程度评分的增加而逐渐升高。相关分析显示,CAP患者血清IL-2水平与肝、肾功能等生理指标有关。根据逻辑回归分析,血清IL-2与CAP严重程度评分呈正相关。我们还追踪了CAP患者的预后结果。不良预后结果的风险增加,包括机械通气,血管活性剂的使用,入住ICU,死亡,和更长的医院长度,与入院时更高的IL-2水平相关。入院时血清IL-2与CAP患者的严重病情和不良预后呈正相关。提示IL-2可能参与CAP的发生发展。因此,血清IL-2可能是指导临床医生评估CAP严重程度和判断预后的有效生物标志物.
    The prior studies have shown that interleukin-2 (IL-2) exerts important roles in the pathological and physiological processes of lung diseases. However, the role of IL-2 in community-acquired pneumonia (CAP) is still uncertain. Through a prospective cohort study, our research will explore the correlations between serum IL-2 levels and the severity and prognosis in CAP patients. There were 267 CAP patients included. Blood samples were obtained. Serum IL-2 were tested by enzyme-linked immunosorbent assay (ELISA). Demographic traits and clinical characteristics were extracted. Serum IL-2 were gradually elevated with increasing severity scores in CAP patients. Correlation analyses revealed that serum IL-2 were connected with physiological parameters including liver and renal function in CAP patients. According to a logistic regression analysis, serum IL-2 were positively correlated with CAP severity scores. We also tracked the prognostic outcomes of CAP patients. The increased risks of adversely prognostic outcomes, including mechanical ventilation, vasoactive agent usage, ICU admission, death, and longer hospital length, were associated with higher levels of IL-2 at admission. Serum IL-2 at admission were positively associated with severe conditions and poor prognosis among CAP patients, indicated that IL-2 may involve in the initiation and development of CAP. As a result, serum IL-2 may be an available biomarker to guide clinicians in assessing the severity and determining the prognosis of CAP.
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  • 文章类型: Journal Article
    社区获得性肺炎(CAP)的常用指南是美国胸科学会和美国传染病学会的联合实践指南。我们旨在研究指南一致疗法在CAP治疗中的效果。
    我们系统地搜索了MEDLINE,Embase,中部,WebofScience,和Scopus从2007年到2023年12月。我们筛选了引文,提取的数据,并评估重复偏差的风险。主要结果是死亡率,重症监护病房(ICU)入院,和逗留时间的长短。次要结果是指南依从性,重新接纳,临床治愈率,和不良并发症。我们进行了随机效应荟萃分析,以估计总体效应大小,并使用I2统计量评估异质性。
    我们纳入了17项观察性研究和82240例患者,其中10项研究在荟萃分析中进行了比较和汇总。总体指南依从率为65.2%。指南一致治疗与30天死亡率的统计学显着降低相关(粗比值比[OR],0.49[95%置信区间.34-.70;I2=60%];调整后的OR,0.49[.37-.65;I2=52%])和住院死亡率(粗OR,0.63[.43-.92];I2=61%)。由于显著的异质性,我们无法评估指南一致治疗对住院时间的影响,入住ICU,重新接纳,临床治愈率,和不良并发症。
    在CAP住院患者中,与不一致治疗相比,指南一致治疗可显著降低死亡率;然而,对于其他临床结局,支持指南一致治疗的证据有限.未来的研究需要评估当前指南建议的临床疗效和安全性。
    UNASSIGNED: A commonly used guideline for community-acquired pneumonia (CAP) is the joint American Thoracic Society and Infectious Diseases Society of America practice guideline. We aimed to investigate the effect of guideline-concordant therapy in the treatment of CAP.
    UNASSIGNED: We systematically searched MEDLINE, Embase, CENTRAL, Web of Science, and Scopus from 2007 to December 2023. We screened citations, extracted data, and assessed risk of bias in duplicate. Primary outcomes were mortality rates, intensive care unit (ICU) admission, and length of stay. Secondary outcomes were guideline adherence, readmission, clinical cure rate, and adverse complications. We performed random-effect meta-analysis to estimate the overall effect size and assessed heterogeneity using the I2 statistics.
    UNASSIGNED: We included 17 observational studies and 82 240 patients, of which 10 studies were comparative and pooled in meta-analysis. Overall guideline adherence rate was 65.2%. Guideline-concordant therapy was associated with a statistically significant reduction in 30-day mortality rate (crude odds ratio [OR], 0.49 [95% confidence interval .34-.70; I2 = 60%]; adjusted OR, 0.49 [.37-.65; I2 = 52%]) and in-hospital mortality rate (crude OR, 0.63 [.43-.92]; I2 = 61%). Due to significant heterogeneity, we could not assess the effect of guideline-concordant therapy on length of stay, ICU admission, readmission, clinical cure rate, and adverse complications.
    UNASSIGNED: In hospitalized patients with CAP, guideline-concordant therapy was associated with a significant reduction in mortality rate compared with nonconcordant therapy; however, there was limited evidence to support guideline-concordant therapy for other clinical outcomes. Future studies are needed to assess the clinical efficacy and safety of current guideline recommendations.
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  • 文章类型: Journal Article
    社区获得性肺炎(CAP)是澳大利亚常见的传染病综合征,是全球发病率和死亡率的主要原因。它在澳大利亚推动了大量的抗菌药物处方。准确评估和分层CAP严重程度很重要。然而,充分的评估是具有挑战性的,关于最佳方法仍然存在争议。肺炎链球菌是引起CAP的最常见的细菌病原体。因此,口服阿莫西林单药治疗是低严重程度CAP经验性治疗的主要方法。在低严重程度CAP中,是否需要开始对病原体进行经验性治疗,例如肺炎支原体和军团菌,仍然存在争议;仅根据临床理由评估病原体是困难的。建议用于CAP的口服抗生素(例如阿莫西林,多西环素)具有出色的生物利用度,可以在某些住院患者中使用代替静脉内治疗。在临床实践指南中,对于符合随访稳定性标准的无并发症CAP患者,建议持续5天的抗生素治疗。
    Community-acquired pneumonia (CAP) is a common infectious syndrome in Australia and a leading global cause of morbidity and mortality. It drives a significant amount of antimicrobial prescribing in Australia. Accurate assessment and stratification of CAP severity is important. However, adequate evaluation is challenging and controversy remains about the optimal method. Streptococcus pneumoniae is the most commonly identified bacterial pathogen causing CAP. As such, oral amoxicillin monotherapy is the mainstay of empirical therapy for low-severity CAP. The need to start empirical therapy for pathogens such as Mycoplasma pneumoniae and Legionella species in low-severity CAP remains controversial; evaluating the causative pathogen on clinical grounds alone is difficult. Oral antibiotics recommended for CAP (e.g. amoxicillin, doxycycline) have excellent bioavailability and may be used instead of intravenous therapy in some hospitalised patients. A duration of 5 days of antibiotic therapy is recommended in clinical practice guidelines for patients with uncomplicated CAP who meet stability criteria at follow-up.
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  • 文章类型: Journal Article
    结论:为了加快文章的发表,AJHP在接受后尽快在线发布手稿。接受的手稿经过同行评审和复制编辑,但在技术格式化和作者打样之前在线发布。这些手稿不是记录的最终版本,将在以后替换为最终文章(按照AJHP样式格式化并由作者证明)。
    目的:出院时处方抗生素使用时间过长是很常见的。由药剂师主导的抗菌药物管理计划过渡护理(ASPTOC)干预与改善出院处方有关。为了提高这项服务的可持续性,电子评分系统(ESS),其中包括ASPTOC电子变量,在电子病历中实施,以优先考虑药剂师的工作量。这项研究的目的是评估社区获得性肺炎(CAP)或慢性阻塞性肺疾病(COPD)患者的ESS中ASPTOC变量的实施情况。
    方法:本机构审查委员会批准,回顾性准实验纳入2021年11月1日至2022年3月1日(干预前)和2022年11月1日至2023年3月1日(干预后)因CAP或COPD急性加重(下呼吸道感染)接受口服抗生素治疗的患者.主要终点为优化出院抗菌方案。需要至少194名患者的样本来实现80%的功率以检测优化治疗的频率的20%差异。多变量逻辑回归用于确定与优化方案相关的因素。
    结果:在两个研究组中观察到相似的基线特征(两组n=100)。优化放电方案的频率从69%提高到82%(P=0.033)。药剂师完成的ASPTOC干预措施的百分比从4%增加到25%(P<0.001)。ASPTOC干预,女性性别,和COPD与优化的出院方案独立相关(调整后的比值比,分别为6.57、1.61和3.89;95%CI,分别为1.51-28.63、0.81-3.17和1.85-8.20)。
    结论:启动ASPTOC变量后,优化的出院方案增加,ASPTOC干预完成.药剂师通过ESS使用ASPTOC变量可以帮助改善出院处方。
    CONCLUSIONS: In an effort to expedite the publication of articles, AJHP is posting manuscripts online as soon as possible after acceptance. Accepted manuscripts have been peer-reviewed and copyedited, but are posted online before technical formatting and author proofing. These manuscripts are not the final version of record and will be replaced with the final article (formatted per AJHP style and proofed by the authors) at a later time.
    OBJECTIVE: Prescribing excess antibiotic duration at hospital discharge is common. A pharmacist-led Antimicrobial Stewardship Program Transition of Care (ASP TOC) intervention was associated with improved discharge prescribing. To improve the sustainability of this service, an electronic scoring system (ESS), which included the ASP TOC electronic variable, was implemented in the electronic medical record to prioritize pharmacist workload. The purpose of this study was to evaluate the implementation of the ASP TOC variable in the ESS in patients with community-acquired pneumonia (CAP) or chronic obstructive pulmonary disease (COPD).
    METHODS: This institutional review board-approved, retrospective quasi-experiment included patients discharged on oral antibiotics for CAP or COPD exacerbation (lower respiratory tract infection) from November 1, 2021, to March 1, 2022 (the preintervention period) and November 1, 2022, to March 1, 2023 (the postintervention period). The primary endpoint was optimized discharge antimicrobial regimen. A sample of at least 194 patients was required to achieve 80% power to detect a 20% difference in the frequency of optimized therapy. Multivariable logistic regression was used to identify factors associated with optimized regimens.
    RESULTS: Similar baseline characteristics were observed in both study groups (n = 100 for both groups). The frequency of optimized discharge regimens improved from 69% to 82% (P = 0.033). The percentage of ASP TOC interventions documented as completed by a pharmacist increased from 4% to 25% (P < 0.001). ASP TOC intervention, female gender, and COPD were independently associated with an optimized discharge regimen (adjusted odds ratios, 6.57, 1.61, and 3.89, respectively; 95% CI, 1.51-28.63, 0.81-3.17, and 1.85-8.20, respectively).
    CONCLUSIONS: After the launch of the ASP TOC variable, there was an increase in optimized discharge regimens and ASP TOC interventions completed. Pharmacists\' use of the ASP TOC variable through an ESS can aid in improving discharge prescribing.
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  • 文章类型: Letter
    暂无摘要。
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  • DOI:
    文章类型: Journal Article
    Vaccination programs have proven successful in the prevention and control of infectious diseases among children on a global scale, but the majority of adult populations remain unvaccinated. immunocompromised adults as well as older adults aged low-income countries as Streptococcus pneumoniae infections are associated with substantial morbidity and mortality among 65 years and above. Despite the introduction of pneumococcal conjugate vaccines (PCVs), the burden of vaccine-type serotypes remains high in there are no clear policies for adult vaccination. As per the Global Burden of Disease 2019 report, about 120,000 individuals aged 70 years and older died as a result of LRTIs) in sub-Saharan Africa. A medical advisory board meeting was conducted in April 2022 to discuss the burden of pneumococcal diseases in adults, the current status of policies and practices of adult vaccination, unmet needs, and challenges in Ghana. This expert opinion paper outlines the pneumococcal epidemiology and burden of disease in Ghana, as well as the rationale for adult pneumococcal vaccination. It also highlights the potential barriers to adult vaccination and offers recommendations to overcome these obstacles and enhance vaccine acceptance in Ghana.
    Les programmes de vaccination ont prouvé leur succès dans la prévention et le contrôle des maladies infectieuses chez les enfants à l\'échelle mondiale, mais la majorité des populations adultes restent non vaccinées. Les infections à Streptococcus pneumoniae sont associées à une morbidité et une mortalité substantielles chez les adultes immunodéprimés ainsi que chez les personnes âgées de 65 ans et plus. Malgré l\'introduction des vaccins conjugués contre le pneumocoque (VCP), la charge des sérotypes vaccinaux reste élevée dans les pays à faible revenu car il n\'existe pas de politiques claires en matière de vaccination des adultes. Selon le rapport sur la charge mondiale de morbidité de 2019, environ 120 000 personnes âgées de 70 ans et plus sont décédées des suites d\'infections des voies respiratoires inférieures (IVRI) en Afrique subsaharienne. Une réunion du conseil consultatif médical a eu lieu en avril 2022 pour discuter du fardeau des maladies pneumococciques chez les adultes, de l\'état actuel des politiques et pratiques de vaccination des adultes, des besoins non satisfaits et des défis au Ghana. Cet article d\'opinion d\'experts présente l\'épidémiologie pneumococcique et le fardeau de la maladie au Ghana, ainsi que les arguments en faveur de la vaccination pneumococcique des adultes. Il met également en lumière les obstacles potentiels à la vaccination des adultes et propose des recommandations pour surmonter ces obstacles et améliorer l\'acceptation des vaccins au Ghana. MOTS-CLÉS: Maladie pneumococcique, Fardeau de la maladie, Vaccin conjugué contre le pneumocoque, Vaccination des adultes, Streptococcus pneumoniae, Ghana, Défis de la vaccination, Immunisation des adultes, VCP-13, Pneumonie acquise en communauté.
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  • 文章类型: Journal Article
    免疫抑制构成社区获得性肺炎(CAP)的重大风险。然而,免疫抑制的具体原因及其与发病率的相关性,CAP的病因和预后研究不足。我们从2015年至2018年在德国的法定健康保险中进行了一项基于人群的队列研究。CAP通过ICD-10-GM代码检索。通过编码条件(血液肿瘤,干细胞或器官移植,中性粒细胞减少症,艾滋病毒,原发性免疫抑制综合征)或治疗(免疫抑制剂,抗肿瘤药物,全身性类固醇)。终点定义为CAP的发生(主要),住院治疗,与罕见病原体相关的30天死亡率和CAP。我们的分析使用了经性别调整的Andersen-Gill模型,年龄,长期护理水平,疫苗接种状况,社区类型和合并症.942,008个人,包括54,781个CAPs(住院55%,30天死亡率14.5%)。6%的个体在研究期间显示至少一次免疫抑制发作,以全身性类固醇(39.8%)和血液肿瘤(26.7%)最常见。在7.7%的CAPs中记录到免疫抑制。除了传统的风险因素,如年龄和长期护理水平,免疫抑制患者最容易发生CAP(HR2.4[2.3-2.5])和连续死亡(HR1.9[1.8-2.1]).器官和干细胞移植(HR3.2[2.6-4.0]和2.8[2.1-3.7],分别),HIV(HR3.2[1.9-5.4])和全身性类固醇(>20mg泼尼松日剂量当量(HR2.7[2.4-3.1]))显示感染CAP的风险最高。罕见病原体引起的CAP与免疫抑制密切相关(HR17.1[12.0-24.5]),尤其是HIV(HR34.1[7.6-153])和全身性类固醇(HR8.2[4.6-14.8])。我们的研究阐明了包括全身性类固醇在内的特定免疫抑制状况与CAP的发生和预后的相关性。
    Immunosuppression constitutes a significant risk for community-acquired pneumonia (CAP). Nevertheless, specific causes of immunosuppression and their relevance for incidence, etiology and prognosis of CAP are insufficiently investigated.We conducted a population-based cohort study within a statutory health insurance in Germany from 2015 to 2018. CAP was retrieved by ICD-10-GM codes. Episodes of immunosuppression were identified by coded conditions (hematologic neoplasms, stem cell or organ transplantation, neutropenia, HIV, primary immunosuppressive syndromes) or treatments (immunosuppressants, antineoplastic drugs, systemic steroids). Endpoints were defined as occurrence of CAP (primary), hospitalization, 30-day mortality and CAP associated with rare pathogens. Our analysis utilized the Andersen-Gill model adjusted for sex, age, level of long-term care, vaccination status, community type and comorbidities.942,008 individuals with 54,781 CAPs were included (hospitalization 55%, 30-day mortality 14.5%). 6% of individuals showed at least one episode of immunosuppression during the study period with systemic steroids (39.8%) and hematologic neoplasms (26.7%) being most common. Immunosuppression was recorded in 7.7% of CAPs. Besides classical risk factors such as age and level of long-term care, immunosuppressed patients were most prone to CAP (HR 2.4[2.3-2.5]) and consecutive death (HR 1.9[1.8-2.1]). Organ and stem cell transplantation (HR 3.2[2.6-4.0] and 2.8[2.1-3.7], respectively), HIV (HR 3.2[1.9-5.4]) and systemic steroids (> 20 mg prednisone daily dose equivalent (HR 2.7[2.4-3.1])) showed the highest risk for contracting CAP. CAP by rare pathogens was strongly associated with immunosuppression (HR 17.1[12.0-24.5]), especially HIV (HR 34.1[7.6-153]) and systemic steroids (HR 8.2[4.6-14.8]).Our study elucidates the relevance of particular immunosuppressive conditions including systemic steroids for occurrence and prognosis of CAP.
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  • 文章类型: Journal Article
    社区获得性肺炎是急性住院的常见原因。在怀疑患有这种疾病的患者中识别患有社区获得性肺炎的患者可能是一个挑战,导致不必要的抗生素治疗。我们调查了循环肺损伤标志物表面活性蛋白D(SP-D),克雷布斯·冯·登隆根-6(KL-6),俱乐部细胞蛋白16(CC16)可以帮助识别急性入院时社区获得性肺炎患者.在这项多中心诊断准确性研究中,SP-D,对临时诊断为社区获得性肺炎的急性住院患者的血浆样品中的KL-6和CC16进行了定量。针对以下结果计算每个标记物的受试者操作者特征曲线下面积(AUC):专家小组指定的社区获得性肺炎患者的最终诊断,胸部CT的肺炎表现。分析了来自339名患者的血浆样品。社区获得性肺炎的患病率为63%。每种标记物针对最终诊断和胸部CT诊断的AUC范围在0.50和0.56之间。因此,SP-D,KL-6和CC16在急性住院患者中对社区获得性肺炎的诊断表现不佳。我们的发现表明,这些标记物无法轻易帮助医生确认或排除社区获得性肺炎。
    Community-acquired pneumonia is a common cause of acute hospitalisation. Identifying patients with community-acquired pneumonia among patients suspected of having the disease can be a challenge, which causes unnecessary antibiotic treatment. We investigated whether the circulatory pulmonary injury markers surfactant protein D (SP-D), Krebs von den Lungen-6 (KL-6), and Club cell protein 16 (CC16) could help identify patients with community-acquired pneumonia upon acute admission. In this multi-centre diagnostic accuracy study, SP-D, KL-6, and CC16 were quantified in plasma samples from acutely hospitalised patients with provisional diagnoses of community-acquired pneumonia. The area under the receiver operator characteristics curve (AUC) was calculated for each marker against the following outcomes: patients\' final diagnoses regarding community-acquired pneumonia assigned by an expert panel, and pneumonic findings on chest CTs. Plasma samples from 339 patients were analysed. The prevalence of community-acquired pneumonia was 63%. AUCs for each marker against both final diagnoses and chest CT diagnoses ranged between 0.50 and 0.56. Thus, SP-D, KL-6, and CC16 demonstrated poor diagnostic performance for community-acquired pneumonia in acutely hospitalised patients. Our findings indicate that the markers cannot readily assist physicians in confirming or ruling out community-acquired pneumonia.
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  • 文章类型: Journal Article
    在中国患有社区获得性肺炎(CAP)的成年人发病率很高。CAP是由多种病原体引起的;然而,通常缺乏针对病原体的临床症状。因此,缺乏准确微生物学诊断的患者接受经验性抗微生物药物治疗.
    我们收集了支气管肺泡灌洗液,以及湖北三家医院收治的650名成人CAP患者的临床和实验室数据,四川,和中国的浙江省。培养样本,并使用实时逆转录qPCR(RT-qPCR)测定法测试42种呼吸道细菌和病毒的存在。对CAP进行了地区调查,性别,以及感染或合并感染的年龄和模式。采用适合诊断的临床指南,我们回顾性评估了适当的病原体导向治疗,并将其与最初的经验性治疗进行了比较.
    我们的研究发现,21.38%(139/650)的患者被归类为严重CAP(S-CAP),男性患病率较高,老年人,在温暖的季节。35.53%(231/650)的病例检出细菌病原体。肺炎克雷伯菌,流感嗜血杆菌,金黄色葡萄球菌是不同人口统计学和地区最普遍的细菌。在48.76%(317/650)的患者中发现了病毒病原体,人类鼻病毒,巨细胞病毒是最常见的病毒。24.31%(158/650)的病例存在合并感染,病毒-细菌共感染是最常见的。与标准培养方法相比,RT-qPCR对关键病原体的检测率明显更高。通过允许18.30%(95/518)的患者降级,它显示了优化抗菌药物处方的潜力,其中减少过量抗生素的数量主要包括减少第二代或第三代头孢菌素的使用(5.79%,30/518)和β-内酰胺酶抑制剂组合。
    该研究强调了S-CAP的重大负担,特别是在特定的人口统计和季节。细菌和病毒病原体的流行,伴随着高感染率,强调需要全面的诊断方法。RT-qPCR检测是一种卓越的诊断工具,提供增强的病原体检测能力和促进更精确的抗菌治疗。这可以改善患者的预后,并有助于合理使用抗菌药物,解决日益增长的抗生素耐药性问题。
    UNASSIGNED: Adults with community-acquired pneumonia (CAP) in China suffer high morbidity. CAP is caused by a multitude of pathogens; however, pathogen-directed clinical symptoms are often lacking. Therefore, patients lacking an accurate microbiological diagnosis are administered with empirical antimicrobials.
    UNASSIGNED: We collected bronchoalveolar lavage fluid, as well as clinical and laboratory data from 650 adult patients with CAP admitted to three hospitals in Hubei, Sichuan, and Zhejiang provinces in China. Specimens were cultured and tested using real-time reverse transcription qPCR (RT-qPCR) assays for the presence of 42 respiratory bacteria and viruses. CAP was investigated with respect to regions, genders, and age and patterns of infections or co-infections. Employing clinical guidelines adapted for diagnosis, we assessed retrospectively the appropriate pathogen-directed therapy and compared it with the initial empirical therapies.
    UNASSIGNED: Our study identified that 21.38% (139/650) of the patients were classified as having Severe CAP (S-CAP), with a higher prevalence among males, older adults, and during the warm season. Bacterial pathogens were detected in 35.53% (231/650) of cases. K. pneumoniae, H. influenzae, and S. aureus were the most prevalent bacteria across different demographics and regions. Viral pathogens were found in 48.76% (317/650) of patients Epstein-Barr, Human rhinovirus, and Cytomegalovirus were the most common viruses. Co-infections were present in 24.31% (158/650) of cases, with viral-bacterial co-infections being the most frequent. The RT-qPCR demonstrated significantly higher detection rates for key pathogens compared to standard culture methods. It showed potential in optimizing antimicrobial prescriptions by allowing for de-escalation in 18.30% (95/518) of patients, among which reducing the number of excessive antibiotics mainly comprised decreasing the use of 2nd or 3rd generation cephalosporins (5.79%, 30/518) and β-lactamase inhibitor combinations.
    UNASSIGNED: The study highlights the significant burden of S-CAP, particularly among specific demographics and seasons. The prevalence of bacterial and viral pathogens, along with the high rate of co-infections, emphasizes the need for comprehensive diagnostic approaches. The RT-qPCR assays emerge as a superior diagnostic tool, offering enhanced pathogen detection capabilities and facilitating more precise antimicrobial therapy. This could lead to improved patient outcomes and contribute to the rational use of antimicrobials, addressing the growing concern of antibiotic resistance.
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  • 文章类型: Journal Article
    背景:宏基因组下一代测序(mNGS)的出现可能为早期和全面识别社区获得性肺炎(CAP)的病原体提供了有希望的工具。在这项研究中,我们旨在进一步评估mNGS在疑似CAP中的病因诊断价值.
    方法:从541例疑似CAP患者中收集555份支气管肺泡灌洗液(BALF)样本,用于mNGS病原体检测。根据感染诊断和治疗指导评估临床价值。比较了mNGS和痰培养对病原体鉴定的诊断性能以及mNGS和X-pertMTB/RIF对结核病(TB)的诊断性能。为了评估治疗指导的潜力,我们分析了疑似CAP患者的治疗方案,包括经验性抗菌治疗后肺部影像学改变,强化治疗方案,抗真菌治疗,对诊断未确诊且在抗感染治疗后影像学检查未改善的患者以及高度怀疑TB或NTM感染的患者转至武汉肺科医院进行进一步诊断甚至抗分枝杆菌治疗的患者进行1年随访。
    结果:在通过mNGS和痰培养分析的516个BALF样本中,mNGS阳性率明显高于痰培养(79.1%vs.11.4%,P=0.001)。通过mNGS和X-pertMTB/RIF分析了来自确诊结核病患者的48个样本,mNGS诊断活动性TB的敏感性明显低于X-pertMTB/RIF(64.6%vs.85.4%,P=0.031)。在106例病原体阴性病例中,48人最终被认为是非传染性疾病,阴性预测值为45.3%。在381例病原体阳性病例中,311最终被诊断为CAP,阳性预测值为81.6%。共纳入487例患者的治疗效果评价,和67.1%的改善与最初的经验性抗生素治疗。在检测到细菌的163名患者中,77.9%通过抗菌治疗得到改善;在检测到真菌的85例患者中,12.9%抗真菌治疗后缓解。
    结论:总体而言,mNGS在可疑CAP病原体的检测中具有独特的优势。然而,mNGS在诊断TB方面并不优于X-pertMTB/RIF。此外,对于所有疑似CAP患者,不需要将mNGS作为常规检查。此外,当真菌被MNGS检测到时,抗真菌治疗应谨慎。
    BACKGROUND: The emergence of metagenomic next-generation sequencing (mNGS) may provide a promising tool for early and comprehensive identification of the causative pathogen in community-acquired pneumonia (CAP). In this study, we aim to further evaluate the etiological diagnostic value of mNGS in suspected CAP.
    METHODS: A total of 555 bronchoalveolar lavage fluid (BALF) samples were collected for pathogen detection by mNGS from 541 patients with suspected CAP. The clinical value was assessed based on infection diagnosis and treatment guidance. The diagnostic performance for pathogen identification by mNGS and sputum culture and for tuberculosis (TB) by mNGS and X-pert MTB/RIF were compared. To evaluate the potential for treatment guidance, we analyzed the treatment regimen of patients with suspected CAP, including imaging changes of lung after empirical antibacterial therapy, intensified regimen, antifungal treatment, and a 1-year follow up for patients with unconfirmed diagnosis and non-improvement imaging after anti-infective treatment and patients with high suspicion of TB or NTM infection who were transferred to the Wuhan Pulmonary Hospital for further diagnosis and even anti-mycobacterium therapy.
    RESULTS: Of the 516 BALF samples that were analyzed by both mNGS and sputum culture, the positivity rate of mNGS was significantly higher than that of sputum culture (79.1% vs. 11.4%, P = 0.001). A total of 48 samples from patients with confirmed TB were analyzed by both mNGS and X-pert MTB/RIF, and the sensitivity of mNGS for the diagnosis of active TB was significantly lower than that of X-pert MTB/RIF (64.6% vs. 85.4%, P = 0.031). Of the 106 pathogen-negative cases, 48 were ultimately considered non-infectious diseases, with a negative predictive value of 45.3%. Of the 381 pathogen-positive cases, 311 were eventually diagnosed as CAP, with a positive predictive value of 81.6%. A total of 487 patients were included in the evaluation of the therapeutic effect, and 67.1% improved with initial empirical antibiotic treatment. Of the 163 patients in which bacteria were detected, 77.9% improved with antibacterial therapy; of the 85 patients in which fungi were detected, 12.9% achieved remission after antifungal therapy.
    CONCLUSIONS: Overall, mNGS had unique advantages in the detection of suspected CAP pathogens. However, mNGS was not superior to X-pert MTB/RIF for the diagnosis of TB. In addition, mNGS was not necessary as a routine test for all patients admitted with suspected CAP. Furthermore, when fungi are detected by mNGS, antifungal therapy should be cautious.
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