catecholate

儿茶酚酸盐
  • 文章类型: Journal Article
    我们研究了大肠杆菌外膜蛋白Fiu,一种假定的单体儿茶酚铁转运蛋白,通过在其表面环中引入Cys残基并用荧光素马来酰亚胺(FM)对其进行修饰。三甲酚酸铁载体肠杆菌素(FeEnt)和糖基化肠杆菌素(FeGEnt)的Fiu-FM结合的铁复合物,它们的二甲酸降解产物Fe(DHBS)2(FeEnt*),单甲酸酯二羟基苯甲酸(FeDHBA)和二羟基苯甲酰基丝氨酸(FeDHBS),和铁载体抗生素头孢地洛(FDC)和MB-1。与高亲和力配体门控孔蛋白(LGP)不同,Fiu-FM对铁络合物仅具有微摩尔亲和力。FeDHBS的表观KD值,FeDHBA,FeEnt*,FeEnt,FeGEnt,FeFDC,和FeMB-1分别为0.1、0.7、0.7、1.0、0.3、0.4和4μM,分别。尽管它具有广泛的约束力,大肠杆菌Fiu的运输库,还有Cir和FepA,不那么广泛。Fiu仅运输FeEnt*。Cir运输了FeEnt*和FeDHBS(弱);FepA运输了FeEnt,FeEnt*,和FeDHBA。Cir和FepA都绑定了FeGEnt,尽管亲和力较低。鲍曼不动杆菌的相关转运蛋白(PiuA,皮拉,BauA)对二-或单体儿茶酚铁具有类似的中等亲和力和广泛特异性。微生物和放射性同位素实验均显示了Fiu对FeEnt*的独家运输,而不是单茶酚铁化合物。分子对接和分子动力学模拟预测了Fiu外部前庭中FeEnt*的三个结合位点,和其内部更深的第四个地点。最外层位点的丙氨酸扫描诱变(1a,1b,和2)降低FeEnt*结合亲和力多达20倍,并降低或消除FeEnt*摄取。最后,分子动力学模拟提出了FeEnt*通过Fiu运动的途径,该途径通常可以描述TonB依赖性受体的金属运输过程。
    We studied the Escherichia coli outer membrane protein Fiu, a presumed transporter of monomeric ferric catecholates, by introducing Cys residues in its surface loops and modifying them with fluorescein maleimide (FM). Fiu-FM bound iron complexes of the tricatecholate siderophore enterobactin (FeEnt) and glucosylated enterobactin (FeGEnt), their dicatecholate degradation product Fe(DHBS)2 (FeEnt*), the monocatecholates dihydroxybenzoic acid (FeDHBA) and dihydroxybenzoyl serine (FeDHBS), and the siderophore antibiotics cefiderocol (FDC) and MB-1. Unlike high-affinity ligand-gated porins (LGPs), Fiu-FM had only micromolar affinity for iron complexes. Its apparent KD values for FeDHBS, FeDHBA, FeEnt*, FeEnt, FeGEnt, FeFDC, and FeMB-1 were 0.1, 0.7, 0.7, 1.0, 0.3, 0.4, and 4 μM, respectively. Despite its broad binding abilities, the transport repertoires of E. coli Fiu, as well as those of Cir and FepA, were less broad. Fiu only transported FeEnt*. Cir transported FeEnt* and FeDHBS (weakly); FepA transported FeEnt, FeEnt*, and FeDHBA. Both Cir and FepA bound FeGEnt, albeit with lower affinity. Related transporters of Acinetobacter baumannii (PiuA, PirA, BauA) had similarly moderate affinity and broad specificity for di- or monomeric ferric catecholates. Both microbiological and radioisotopic experiments showed Fiu\'s exclusive transport of FeEnt*, rather than ferric monocatecholate compounds. Molecular docking and molecular dynamics simulations predicted three binding sites for FeEnt*in the external vestibule of Fiu, and a fourth site deeper in its interior. Alanine scanning mutagenesis in the outermost sites (1a, 1b, and 2) decreased FeEnt* binding affinity as much as 20-fold and reduced or eliminated FeEnt* uptake. Finally, the molecular dynamics simulations suggested a pathway of FeEnt* movement through Fiu that may generally describe the process of metal transport by TonB-dependent receptors.
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  • 文章类型: Journal Article
    铀与非无辜有机物质之间的相互作用是基本铀氧化还原化学的重要组成部分。然而,它们很少在多维的背景下被探索,多孔材料。铀基金属有机骨架(MOFs)为研究这些相互作用提供了一个新的视角,由于这些自组装的物种通过在晶体框架内的有机连接体固定来稳定铀物种,同时潜在地提供了通过非无辜接头的配位来调节金属氧化态的方法。我们报告了由U4-桨轮节点和基于儿茶酚的接头组装的MOFNU-1700的合成。我们提出了这种非常不寻常的结构,由于通过粉末X射线衍射(PXRD)进行了广泛的表征,其中包含由四个连接体构成的桨轮中的两个U4-铀材料中的第一个,吸附,透射电子显微镜(TEM),和热重分析(TGA),除了密度泛函理论(DFT)计算。
    The interactions between uranium and non-innocent organic species are an essential component of fundamental uranium redox chemistry. However, they have seldom been explored in the context of multidimensional, porous materials. Uranium-based metal-organic frameworks (MOFs) offer a new angle to study these interactions, as these self-assembled species stabilize uranium species through immobilization by organic linkers within a crystalline framework, while potentially providing a method for adjusting metal oxidation state through coordination of non-innocent linkers. We report the synthesis of the MOF NU-1700, assembled from U4+ -paddlewheel nodes and catecholate-based linkers. We propose this highly unusual structure, which contains two U4+ ions in a paddlewheel built from four linkers-a first among uranium materials-as a result of extensive characterization via powder X-ray diffraction (PXRD), sorption, transmission electron microscopy (TEM), and thermogravimetric analysis (TGA), in addition to density functional theory (DFT) calculations.
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  • 文章类型: Journal Article
    肠杆菌素是一种典型的儿茶酚酸铁载体,在微生物获得三价铁中起关键作用。儿茶酚部分已被证明是有前途的铁载体核心。具有结构修饰的保守的2,3-二羟基苯甲酸酯(DHB)部分的变体扩展了生物活性。链霉菌的特征在于具有不同结构的代谢物。变链霉菌的基因组序列表明,它具有含有铁载体的DHB的生物合成基因簇,代谢谱分析显示与儿茶酚型天然产物相关的代谢物。这里,我们报告发现了一系列由S.varsoviensis产生的儿茶酚酸铁载体,并进行了放大发酵以纯化这些化合物以进行结构阐明。还提出了儿茶酚酸铁载体的生物合成途径。这些新的结构特征丰富了肠杆菌素家族化合物的结构多样性。一种新的线性肠杆菌素同源物显示出对食源性病原体单核细胞增生李斯特菌的中等活性。这项工作表明,改变培养条件仍然是探索未开发化学多样性的有希望的方法。生物合成机器的可用性将丰富儿茶酚铁载体的遗传工具箱,并促进此类工程工作。
    Enterobactin is an archetypical catecholate siderophore that plays a key role in the acquisition of ferric iron by microorganisms. Catechol moieties have been shown to be promising siderophore cores. Variants of the conserved 2,3-dihydroxybenzoate (DHB) moiety with structural modifications expand the bioactivity. Streptomyces are characterized by metabolites with diverse structures. The genomic sequence of Streptomyces varsoviensis indicated that it possessed a biosynthetic gene cluster for DHB containing siderophores and metabolic profiling revealed metabolites correlated with catechol-type natural products. Here, we report the discovery of a series of catecholate siderophores produced by S. varsoviensis and a scale-up fermentation was performed to purify these compounds for structural elucidation. A biosynthetic route for the catecholate siderophores is also proposed. These new structural features enrich the structural diversity of the enterobactin family compounds. One of the new linear enterobactin congeners shows moderate activity against a food-borne pathogen Listeria monocytogenes. This work demonstrated that changing culture conditions is still a promising approach to explore unexplored chemical diversity. The availability of the biosynthetic machinery will enrich the genetic toolbox of catechol siderophores and facilitate such engineering efforts.
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  • 文章类型: Journal Article
    一系列“α-二亚胺-MII-儿茶酚酸盐”型的新电荷转移(CT)发色团(其中M是3d行过渡金属-Cu,Ni,Co)根据三种改进的合成方法,衍生自4,4'-二叔丁基-2,2'-联吡啶和3,6-二叔丁基-邻苯醌(3,6-DTBQ),提供高产量的产品。单体[CuII(3,6-Cat)(bipytBu)]·THF(1)和NiII(3,6-Cat)(bipytBu)(2)发色团固有的方形平面分子结构,而二聚复合物[CoII(3,6-Cat)(bipytBu)]2*甲苯(3)单位两个实质上扭曲的杂配D-MII-A(其中D,M,A是捐赠者,金属和受体,分别)通过从儿茶酚酸二阴离子中捐赠氧原子而形成的部分。发色团1-3经历有效的光诱导分子内电荷转移(λ=500-715nm,消光系数高达104M-1·cm-1),伴随着极性较小的受激物种的产生,其能量对溶剂极性非常敏感,确保明显的负溶剂化作用。特别注意通过UV-vis-NIR光谱的协同作用探索的CT和相互作用的HOMO/LUMO轨道的能量特征,循环伏安法,和DFT研究。当前的工作揭示了CT特性对周期律各个组的金属中心性质的依赖性。此外,首次比较了基于“晚期”过渡元素的“α-二亚胺-MII-儿茶酚盐”CT发色团,其d级电子结构存在差异。
    A series of new charge transfer (CT) chromophores of \"α-diimine-MII-catecholate\" type (where M is 3d-row transition metals-Cu, Ni, Co) were derived from 4,4\'-di-tert-butyl-2,2\'-bipyridyl and 3,6-di-tert-butyl-o-benzoquinone (3,6-DTBQ) in accordance with three modified synthetic approaches, which provide high yields of products. A square-planar molecular structure is inherent for monomeric [CuII(3,6-Cat)(bipytBu)]∙THF (1) and NiII(3,6-Cat)(bipytBu) (2) chromophores, while dimeric complex [CoII(3,6-Cat)(bipytBu)]2∙toluene (3) units two substantially distorted heteroleptic D-MII-A (where D, M, A are donor, metal and acceptor, respectively) parts through a donation of oxygen atoms from catecholate dianions. Chromophores 1-3 undergo an effective photoinduced intramolecular charge transfer (λ = 500-715 nm, extinction coefficient up to 104 M-1·cm-1) with a concomitant generation of a less polar excited species, the energy of which is a finely sensitive towards solvent polarity, ensuring a pronounced negative solvatochromic effect. Special attention was paid to energetic characteristics for CT and interacting HOMO/LUMO orbitals that were explored by a synergy of UV-vis-NIR spectroscopy, cyclic voltammetry, and DFT study. The current work sheds light on the dependence of CT peculiarities on the nature of metal centers from various groups of the periodic law. Moreover, the \"α-diimine-MII-catecholate\" CT chromophores on the base of \"late\" transition elements with differences in d-level\'s electronic structure were compared for the first time.
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  • 文章类型: Journal Article
    There is an increasing interest in using photoelectrochemistry for enhancing the signal-to-noise ratio and sensitivity of electrochemical biosensors. Nevertheless, it remains challenging to create photoelectrochemical biosensors founded on stable material systems that are also easily biofunctionalized for sensing applications. Herein, a photoelectrochemical immunosensor is reported, in which the concentration of the target protein directly correlates to a change in the measured photocurrent. The material system for the photoelectrode signal transducer involves using catecholate ligands to modify the properties of TiO2 nanostructures in a three-pronged approach of morphology tuning, photoabsorption enhancement, and facilitating bioconjugation. The catecholate-modified TiO2 photoelectrode is combined with a signal-off direct immunoassay to detect interleukin-6 (IL-6), a key biomarker for diagnosing and monitoring various diseases. Catecholate ligands are added during hydrothermal synthesis of TiO2 to enable the growth of three-dimensional nanostructures to form highly porous photoelectrodes that provide a three-dimensional scaffold for immobilizing capture antibodies. Surface modification by catecholate ligands greatly enhances photocurrent generation of the TiO2 photoelectrodes by improving photoabsorption in the visible range. Additionally, catecholate molecules facilitate bioconjugation and probe immobilization by forming a Schiff-base between their -COH group and the -NH2 group of the capture antibodies. The highest photocurrent achieved herein is 8.89 μA cm-2, which represents an enhancement by a factor of 87 from unmodified TiO2. The fabricated immunosensor shows a limit-of-detection of 3.6 pg mL-1 and a log-linear dynamic range of 2-2000 pg mL-1 for IL-6 in human blood plasma.
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  • 文章类型: Journal Article
    The phenyltris[(tert-butylthio)methyl]borate ligand, [PhTttBu], has been studied extensively as a platform for coordination, organometallic, and bioinorganic chemistry, especially with 3d metals. While [PhTttBu]Co(3,5-DBCatH) (3,5-DBCatH is 3,5-di-tert-butylcatecholate), a CoII-monoanionic catecholate complex, was successfully isolated to model the active site of cobalt(II)-substituted homoprotocatechuate 2,3-dioxygenase (Co-HPCD) [Wang et al. (2019). Inorg. Chim. Acta, 488, 49-55], its iron(II) counterpart, [PhTttBu]Fe(3,5-DBCatH), was not accessible via similar synthetic routes. Switching the nucleophile from catecholate to alkoxide or aryloxide, however, led to the successful isolation of three highly air-sensitive FeII-alkoxide and -aryloxide complexes, namely, (triphenylmethoxo){tris[(tert-butylsulfanyl)methyl]phenylborato-κ3S,S\',S\'\'}iron(II), [Fe(C21H38BS3)(C19H15O)], (2), (2,6-dimethylphenolato){tris[(tert-butylsulfanyl)methyl]phenylborato-κ3S,S\',S\'\'}iron(II), [Fe(C21H38BS3)(C8H9O)], (3), and bis{μ-tris[(tert-butylsulfanyl)methyl]phenylborato-κ3S,S\':S\'\'}bis[(phenolato-κO)iron(II)] toluene disolvate, [Fe2(C21H38BS3)2(C6H5O)2]·2C7H8, (4). In the solid state, compounds (2) and (3) are monomeric, with [PhTttBu] acting as a tridentate ligand. In contrast, compound (4) crystallizes as a dimeric complex, wherein each [PhTttBu] ligand binds to an iron centre with two thioethers and binds to the other iron centre with the third thioether. The molecular structures of (2)-(4) demonstrate a diversity in the binding modes of [PhTttBu] and highlight its potential use for assembling multinuclear complexes. In addition, the successful isolation of (2)-(4), as well as the structural information of a [PhTttBu] modification product, namely, bis{μ-tris[(tert-butylsulfanyl)methyl](2-oxidophenolato)borato-κO,O\',S,S\':O\'}dicobalt(II), [Co2(C21H37BO2S3)2], (5), obtained from the reaction of [PhTttBu]CoCl with potassium monoanionic catecholate, shed light on the origin of the instability of [PhTttBu]Fe(3,5-DBCatH).
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  • 文章类型: Journal Article
    尽管细菌和真菌铁载体的生物化学已经在实验室培养中得到了深入研究,它们的分布和对土壤养分循环和微生物群落的影响仍然知之甚少。由于土壤基质的复杂性及其结构多样性,土壤中铁载体的检测是一项分析挑战。液相色谱-质谱(LC-MS)是复杂样品中铁载体灵敏分析的合适方法;然而,铁载体萃取到液相中以进行LC-MS分析是有问题的,因为它们吸附在土壤颗粒和有机物上。为了确定结构多样的铁载体的提取效率,加标回收率实验建立了代表三个主要铁载体类别的标准:异羟肟酸盐去铁胺B(DFOB),α-羟基羧酸根铁蛋白,和儿茶酚原螯合素。以前使用的溶剂萃取用水或甲醇仅回收一小部分(<35%)铁载体,包括<5%的根铁蛋白和原螯合素。我们设计了组合化学萃取(22种总溶液),以针对与不同土壤成分相关的铁载体。氯化钙和抗坏血酸的组合达到了高,对于一些土壤,DFOB和根铁蛋白的定量提取。由于潜在的快速氧化和与胶体土壤成分的相互作用,原螯合素分析变得复杂。使用优化的提取方法,我们检测到α-羟基羧酸盐型铁载体(即根际铁蛋白,弧菌铁蛋白,和aerobactin)首次在土壤中。浓度达到461pmolg-1,超过了先前报道的土壤中铁载体的浓度,这表明α-羟基羧酸铁载体对土壤中生物相互作用和生物地球化学过程的重要性尚未得到认可。
    Although the biochemistry of bacterial and fungal siderophores has been intensively studied in laboratory cultures, their distribution and impacts on nutrient cycling and microbial communities in soils remain poorly understood. The detection of siderophores in soil is an analytical challenge because of the complexity of the soil matrix and their structural diversity. Liquid chromatography-mass spectrometry (LC-MS) is a suitable method for the sensitive analysis of siderophores in complex samples; however, siderophore extraction into liquid phases for analysis by LC-MS is problematic because of their adsorption to soil particles and organic matter. To determine extraction efficiencies of structurally diverse siderophores, spike-recovery experiments were set up with standards representing the three main siderophore classes: the hydroxamate desferrioxamine B (DFOB), the α-hydroxycarboxylate rhizoferrin, and the catecholate protochelin. Previously used solvent extractions with water or methanol recovered only a small fraction (< 35%) of siderophores, including < 5% for rhizoferrin and protochelin. We designed combinatorial chemical extractions (22 total solutions) to target siderophores associated with different soil components. A combination of calcium chloride and ascorbate achieved high and, for some soils, quantitative extraction of DFOB and rhizoferrin. Protochelin analysis was complicated by potential fast oxidation and interactions with colloidal soil components. Using the optimized extraction method, we detected α-hydroxycarboxylate type siderophores (viz. rhizoferrin, vibrioferrin, and aerobactin) in soil for the first time. Concentrations reached 461 pmol g-1, exceeding previously reported concentrations of siderophores in soil and suggesting a yet unrecognized importance of α-hydroxycarboxylate siderophores for biological interactions and biogeochemical processes in soil.
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  • 文章类型: Journal Article
    A conjugated copper(II) catecholate based metal-organic framework (namely Cu-DBC) was prepared using a D2 -symmetric redox-active ligand in a copper bis(dihydroxy) coordination geometry. The π-d conjugated framework exhibits typical semiconducting behavior with a high electrical conductivity of ca. 1.0 S m-1 at room temperature. Benefiting from the good electrical conductivity and the excellent redox reversibility of both ligand and copper centers, Cu-DBC electrode features superior capacitor performances with gravimetric capacitance up to 479 F g-1 at a discharge rate of 0.2 A g-1 . Moreover, the symmetric solid-state supercapacitor of Cu-DBC exhibits high areal (879 mF cm-2 ) and volumetric (22 F cm-3 ) capacitances, as well as good rate capability. These metrics are superior to most reported MOF-based supercapacitors, demonstrating promising applications in energy-storage devices.
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  • 文章类型: Journal Article
    A variable-temperature single-crystal structural study of five valence tautomeric cobalt molecular complexes, CoII(3,5-DBSQ)2(DBPy)2 (1), CoII(3,5-DBSQ)2(DBPy)2·1.33C7H8 (1S), CoII(3,5-DBSQ)2(DCPy)2·C7H8 (2S), CoII(3,5-DBSQ)2(TBPy)2 (3) and CoII(3,5-DBSQ)2(TCPy)2 (4) (S = toluene, 3,5-DBSQ = 3,5-di-tert-butylsemiquinonate, DBPy = 3,5-dibromopyridine, DCPy = 3,5-dichloropyridine, TBPy = 3,4,5-tribromopyridine and TCPy = 3,4,5-trichloropyridine) is reported. The re-crystallization of (1S) in toluene at 277 K resulted in a concomitant formation of a solvent-free polymorph, CoII(3,5-DBSQ)2(DBPy)2 (1). Thermally induced valence tautomerism (VT) is observed only in (1S), (1) and (2S) [hs-CoII(3,5-DBSQ)2L2 ↔ ls-CoIII(3,5-DBSQ)(3,5-DBCat)L2 (hs = high spin, ls = low spin, 3,5-DBCat = 3,5-di-tert-butylcatecholate)], whereas (3) and (4) remain locked in the hs-CoII(3,5-DBSQ)2 state during cooling of the sample. Multi-temperature single-crystal studies demonstrate the change in cobalt coordination environment during the VT conversion. The non-solvated compound (1) shows a sharp VT transition (T1/2 ∼ 245 K with ΔT ∼ 10 K) from hs-CoII(3,5-DBSQ)2(DBPy)2 to ls-CoIII(3,5-DBSQ)(3,5-DBCat)(DBPy)2 oxidation state, whereas the other polymorph with lattice solvent (1S) results in a broad transition (T1/2 ∼ 150 K with ΔT ∼ 100 K). This increase in the VT transition temperature for (1) relative to (1S) illustrates the effect of lattice solvent on the VT transition mechanism. Additionally, the influence of halogen substitutions on the pyridine ring is discussed with respect to observed VT behaviour in the studied compounds.
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