biological engineering

生物工程
  • 文章类型: Journal Article
    外来体是由几乎所有类型的细胞分泌的纳米级膜结合囊泡。它们独特的属性,如最小的免疫原性和与生物系统的兼容性,使它们成为新型的药物输送载体。这些天然的外泌体含有蛋白质,核酸,小分子化合物,和荧光剂。此外,通过化学和生物工程方法的结合,外泌体被定制为将精确的治疗有效载荷运输到指定的细胞或组织。在这次审查中,我们总结了工程外泌体中外泌体修饰和药物装载方式的策略。此外,我们概述了工程化外泌体用于靶向药物递送的研究进展.最后,我们讨论了化学工程与生物工程外泌体介导的靶向治疗的优点和局限性.这些见解为在药物开发中改进工程外泌体提供了额外的选择,并有望加快工程外泌体从工作台到床边的成功翻译。
    Exosomes are nanoscale membrane bound vesicles secreted by almost all types of cells. Their unique attributes, such as minimal immunogenicity and compatibility with biological systems, make them novel carriers for drug delivery. These native exosomes harbor proteins, nucleic acids, small molecule compounds, and fluorogenic agents. Moreover, through a combination of chemical and bioengineering methodologies, exosomes are tailored to transport precise therapeutic payloads to designated cells or tissues. In this review, we summarize the strategies for exosome modification and drug loading modalities in engineered exosomes. In addition, we provide an overview of the advances in the use of engineered exosomes for targeted drug delivery. Lastly, we discuss the merits and limitations of chemically engineered versus bioengineered exosome-mediated target therapies. These insights offer additional options for refining engineered exosomes in pharmaceutical development and hold promise for expediting the successful translation of engineered exosomes from the bench to the bedside.
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  • 文章类型: Journal Article
    基于细菌的癌症治疗领域,重点是细菌流行所起的关键作用,特别是在肿瘤中,控制癌症治疗的潜在靶点,在过去的几十年里有了巨大的增长。在这次审查中,我们讨论,第一次,全球癌症形势和在癌症治疗中使用细菌的时间表。我们还探讨了跨学科合作如何促进基于细菌的癌症疗法的发展。此外,我们解决了基于细菌的癌症治疗在临床试验中被接受所需要克服的挑战,以及该领域的最新进展.通过基于细菌的癌症治疗开发的突破性技术为癌症的各种疗法开辟了新的治疗策略。
    The field of bacteria-based cancer therapy, which focuses on the key role played by the prevalence of bacteria, specifically in tumors, in controlling potential targets for cancer therapy, has grown enormously over the past few decades. In this review, we discuss, for the first time, the global cancer situation and the timeline for using bacteria in cancer therapy. We also explore how interdisciplinary collaboration has contributed to the evolution of bacteria-based cancer therapies. Additionally, we address the challenges that need to be overcome for bacteria-based cancer therapy to be accepted in clinical trials and the latest advancements in the field. The groundbreaking technologies developed through bacteria-based cancer therapy have opened up new therapeutic strategies for a wide range of therapeutics in cancer.
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  • 文章类型: Journal Article
    暂无摘要。
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  • 文章类型: Journal Article
    过去50年见证了农药需求和应用的大规模扩张。然而,如果没有干预,农药很难完全降解,因此农药残留可能在许多方面对非目标生物构成持续威胁。针对农药产品滥用及环境中农药残留超标的问题,化学和生物降解方法得到了广泛的发展,但规模庞大,不足以解决这种污染。近年来,合成生物学原理指导的生物降解工具得到了进一步研究,为农药降解铺平了道路。结合定制化设计策略和标准化装配模式,多维降解的工程菌已成为农药残留降解的有效工具。本文综述了不同农药的作用机理和危害,综述了农药残留的降解方法,并讨论了优势,应用程序,以及合成生物学降解农药残留的前景。
    The past 50 years have witnessed a massive expansion in the demand and application of pesticides. However, pesticides are difficult to be completely degraded without intervention hence the pesticide residue could pose a persistent threat to non-target organisms in many aspects. To aim at the problem of the abuse of pesticide products and excessive pesticide residues in the environment, chemical and biological degradation methods are widely developed but are scaled and insufficient to solve such a pollution. In recent years, bio-degradative tools instructed by synthetic biological principles have been further studied and have paved a way for pesticide degradation. Combining the customized design strategy and standardized assembly mode, the engineering bacteria for multi-dimensional degradation has become an effective tool for pesticide residue degradation. This review introduces the mechanisms and hazards of different pesticides, summarizes the methods applied in the degradation of pesticide residues, and discusses the advantages, applications, and prospects of synthetic biology in degrading pesticide residues.
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  • 文章类型: Journal Article
    卵巢癌(OC)是一种主要关注的疾病,五年生存率约为40%。这归因于疾病发作期间缺乏可见和可靠的症状,这导致超过80%的患者在晚期被诊断。这意味着转移活性已经进展到腹膜腔。它与遗传和表型异质性有关,这大大增加了复发的风险并降低了生存率。了解卵巢癌的病理生理学,加强药物筛选能力,需要进一步开发相关的体外模型,以概括OC微环境的复杂性和OC细胞群的动力学。在这行,三维(3D)细胞培养和微流体技术的最新进展使得高度创新的模型得以发展,这些模型可以弥合临床研究的病理生理学和机理模型之间的差距.这篇综述首先描述了OC的病理生理学,然后详细介绍了为概述这些主要生物学特征而开发的工程策略。
    Ovarian cancer (OC) is a disease of major concern with a survival rate of about 40% at five years. This is attributed to the lack of visible and reliable symptoms during the onset of the disease, which leads over 80% of patients to be diagnosed at advanced stages. This implies that metastatic activity has advanced to the peritoneal cavity. It is associated with both genetic and phenotypic heterogeneity, which considerably increase the risks of relapse and reduce the survival rate. To understand ovarian cancer pathophysiology and strengthen the ability for drug screening, further development of relevant in vitro models that recapitulate the complexity of OC microenvironment and dynamics of OC cell population is required. In this line, the recent advances of tridimensional (3D) cell culture and microfluidics have allowed the development of highly innovative models that could bridge the gap between pathophysiology and mechanistic models for clinical research. This review first describes the pathophysiology of OC before detailing the engineering strategies developed to recapitulate those main biological features.
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  • 文章类型: Journal Article
    皮肤组织再生和修复是一个复杂的过程,涉及多种细胞类型,和目前的疗法仅限于促进皮肤伤口愈合。已证明间充质基质细胞(MSC)通过其多分化和旁分泌作用增强皮肤组织修复。然而,仍然有困难,如骨髓间充质干细胞在伤口愈合中的有限的增殖潜力和需要加强的生物过程。最近,三维(3D)生物打印已被用作组织再生的有前途的技术。3D生物打印的MSCs可以保持较好的细胞增殖能力和表达生物因子以促进皮肤创伤愈合。据报道,3D生物打印的MSCs可以通过抗炎促进皮肤组织修复,细胞增殖和迁移,血管生成,和细胞外基质重塑。在这次审查中,我们将讨论MSCs和3D生物打印在皮肤组织再生治疗中的作用的进展,以及当前研究的视角和局限性。
    Skin tissue regeneration and repair is a complex process involving multiple cell types, and current therapies are limited to promoting skin wound healing. Mesenchymal stromal cells (MSCs) have been proven to enhance skin tissue repair through their multidifferentiation and paracrine effects. However, there are still difficulties, such as the limited proliferative potential and the biological processes that need to be strengthened for MSCs in wound healing. Recently, three-dimensional (3D) bioprinting has been applied as a promising technology for tissue regeneration. 3D-bioprinted MSCs could maintain a better cell ability for proliferation and expression of biological factors to promote skin wound healing. It has been reported that 3D-bioprinted MSCs could enhance skin tissue repair through anti-inflammatory, cell proliferation and migration, angiogenesis, and extracellular matrix remodeling. In this review, we will discuss the progress on the effect of MSCs and 3D bioprinting on the treatment of skin tissue regeneration, as well as the perspective and limitations of current research.
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  • 文章类型: Journal Article
    丹参酸A(SAA),丹参作为传统中草药的主要生物活性成分,在心血管疾病的治疗中具有重要的应用价值。在这项研究中,开发了由l-DOPA制备SAA的两步生物工艺。第一步,使用工程化的大肠杆菌细胞将1-DOPA转化为3,4-二羟基苯丙氨酸(DHPPA),该大肠杆菌细胞表达了来自普通变形杆菌的膜结合的L-氨基酸脱氨酶。之后,通过透化重组大肠杆菌细胞将未纯化的DHPPA直接转化为SAA,共表达来自乳酸小球菌的d-乳酸脱氢酶和来自母牛分枝杆菌N10的甲酸脱氢酶。在优化条件下,48.3mM的SAA可以由50mM的1-DOPA制备,产率为96.6%。因此,这里开发的生物过程不仅环保,而且还表现出优异的生产效率,因此,是有前途的工业SAA生产。
    Salvianic acid A (SAA), as the main bioactive component of the traditional Chinese herb Salvia miltiorrhiza, has important application value in the treatment of cardiovascular diseases. In this study, a two-step bioprocess for the preparation of SAA from l-DOPA was developed. In the first step, l-DOPA was transformed to 3,4-dihydroxyphenylalanine (DHPPA) using engineered Escherichia coli cells expressing membrane-bound L-amino acid deaminase from Proteus vulgaris. After that, the unpurified DHPPA was directly converted into SAA by permeabilized recombinant E. coli cells co-expressing d-lactate dehydrogenase from Pediococcus acidilactici and formate dehydrogenase from Mycobacterium vaccae N10. Under optimized conditions, 48.3 mM of SAA could be prepared from 50 mM of l-DOPA, with a yield of 96.6%. Therefore, the bioprocess developed here was not only environmentally friendly, but also exhibited excellent production efficiency and, thus, is promising for industrial SAA production.
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  • 文章类型: Journal Article
    UNASSIGNED:国际合成生物学竞赛iGEM(正式称为国际基因工程机器竞赛)有专门的生物安全和生物安全计划。
    UNASSIGNED:对该计划具体要素的审查和一系列具体例子说明了实施该计划的经验如何帮助改进政策,包括遗传部分和生物体来源的日益多样化,跟上技术发展的步伐,考虑未来环境释放的途径,解决抗菌素耐药性,并测试当前生物安全安排的有效性。
    未经评估:iGEM\的计划是前倾的,因为它在新技术和新风险方面都解决了传统的(基于病原体的)和新兴的风险。它被整合到竞赛的技术工作中-明确描述了社区所有成员的角色和责任。它在项目的整个生命周期中运行-从项目设计到未来的应用。它利用特定工具来收集和审查生物安全和生物安全信息,使那些计划和进行科学和工程的人更容易识别潜在风险,并将其与适当的风险管理方法相匹配,以及专家审查这些信息,以找出差距并加强计划。
    UNASSIGNED:整合日益适应的风险管理方法使iGEM的生物安全和生物安全计划变得全面,交叉,并覆盖比赛的生命周期。
    UNASSIGNED: The international synthetic biology competition iGEM (formally known as the international Genetically Engineered Machines competition) has a dedicated biosafety and biosecurity program.
    UNASSIGNED: A review of specific elements of the program and a series of concrete examples illustrate how experiences in implementing the program have helped improved policy, including an increasing diversity of sources for genetic parts and organisms, keeping pace with technical developments, considering pathways toward future environmental release, addressing antimicrobial resistance, and testing the efficacy of current biosecurity arrangements.
    UNASSIGNED: iGEM\'s program is forward-leaning, in that it addresses both traditional (pathogen-based) and emerging risks both in terms of new technologies and new risks. It is integrated into the technical work of the competition-with clearly described roles and responsibilities for all members of the community. It operates throughout the life cycle of projects-from project design to future application. It makes use of specific tools to gather and review biosafety and biosecurity information, making it easier for those planning and conducting science and engineering to recognize potential risks and match them with appropriate risk management approaches, as well as for specialists to review this information to identify gaps and strengthen plans.
    UNASSIGNED: Integrating an increasingly adaptive risk management approach has allowed iGEM\'s biosafety and biosecurity program to become comprehensive, be cross-cutting, and cover the competition\'s life cycle.
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  • 文章类型: Journal Article
    玉米是主要的粮食作物之一,其仁中含有丰富的淀粉,脂质,蛋白质和其他能量物质。此外,玉米粒还含有许多可能对人体健康有益的微量元素,如维生素,矿物质和其他次生代谢产物。然而,玉米可用于营养改良的基因资源有限。在这次审查中,我们总结了107个与不同植物物种的营养含量相关的基因,并从玉米基因组中鉴定了246个直系同源物。此外,我们构建了246个玉米潜在基因资源的物理图谱并进行了详细的表达模式分析。结合表达谱及其在玉米养分改良中的潜在作用,通过在玉米中编辑或异位表达这些基因的基因工程有望改善抗性淀粉,油,必需氨基酸,维生素,铁,玉米籽粒的锌和花色苷水平。因此,本综述为玉米养分改良提供了有价值的基因资源。
    Maize is one of the leading food crops and its kernel is rich in starch, lipids, protein and other energy substances. In addition, maize kernels also contain many trace elements that are potentially beneficial to human health, such as vitamins, minerals and other secondary metabolites. However, gene resources that could be applied for nutrient improvement are limited in maize. In this review, we summarized 107 genes that are associated with nutrient content from different plant species and identified 246 orthologs from the maize genome. In addition, we constructed physical maps and performed a detailed expression pattern analysis for the 246 maize potential gene resources. Combining expression profiles and their potential roles in maize nutrient improvement, genetic engineering by editing or ectopic expression of these genes in maize are expected to improve resistant starch, oil, essential amino acids, vitamins, iron, zinc and anthocyanin levels of maize grains. Thus, this review provides valuable gene resources for maize nutrient improvement.
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  • 文章类型: Journal Article
    优化合成生物系统,例如新的代谢途径,随着更多的蛋白质成分变得更加复杂。驯服复杂性并允许更快速优化的一种方法是将外部控制工程到组件中。药理学本质上是使用(主要是)小分子控制蛋白质的科学,和大量的信息,在不同的数据库之间传播,已知这些配体与其靶蛋白之间的结构相互作用。原则上,蛋白质工程师可以使用反向药理学方法在他们的设计中包括药物反应,例如,通过从适合于被包括在设计的蛋白质中的天然蛋白质鉴定配体结合结构域。在这种情况下,“可适应”是指配体结合域在亲本蛋白质的相对独立的子序列中,结构上独立于分子的其余部分,因此其功能应保留在另一种情况下。SynPharm数据库是一个工具,建立在药理学数据库指南上,并连接到各种结构数据库,帮助蛋白质工程师确定适合转移的配体结合域。本文介绍了该工具,并说明了它在寻找转移的候选域中的用途。它还简要描述了已经发表的概念验证研究,其中CRISPR效应子Cas9和Cpf1分别置于他莫昔芬和甲非司酮的控制下,通过在Cas9和Cpf1的修饰版本中包括雌激素受体和孕激素受体的配体结合结构域。药物控制的优势或光遗传学的竞争对手的蛋白质控制技术,为了不同的目的和不同的情况,也进行了简要讨论。
    Optimizing synthetic biological systems, for example novel metabolic pathways, becomes more complicated with more protein components. One method of taming the complexity and allowing more rapid optimization is engineering external control into components. Pharmacology is essentially the science of controlling proteins using (mainly) small molecules, and a great deal of information, spread between different databases, is known about structural interactions between these ligands and their target proteins. In principle, protein engineers can use an inverse pharmacological approach to include drug response in their design, by identifying ligand-binding domains from natural proteins that are amenable to being included in a designed protein. In this context, \"amenable\" means that the ligand-binding domain is in a relatively self-contained subsequence of the parent protein, structurally independent of the rest of the molecule so that its function should be retained in another context. The SynPharm database is a tool, built on to the Guide to Pharmacology database and connected to various structural databases, to help protein engineers identify ligand-binding domains suitable for transfer. This article describes the tool, and illustrates its use in seeking candidate domains for transfer. It also briefly describes already-published proof-of-concept studies in which the CRISPR effectors Cas9 and Cpf1 were placed separately under the control of tamoxifen and mefipristone, by including ligand-binding domains of the Estrogen Receptor and Progesterone Receptor in modified versions of Cas9 and Cpf1. The advantages of drug control or the rival protein-control technology of optogenetics, for different purposes and in different situations, are also briefly discussed.
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