biodiscovery

生物发现
  • 文章类型: Journal Article
    具有杀虫作用的蜘蛛衍生肽,抗菌和/或细胞溶解活性,也被称为蜘蛛毒抗菌肽(AMPs),可以在RTA进化枝蜘蛛的毒液中找到。它们显示出作为治疗导联的翻译潜力。在中国狼蜘蛛(Lycosashansia)中描述了一组52个AMP,和许多已被证明具有抗菌作用。在这里,我们探索了使用生物工程增强其抗微生物活性的潜力。我们产生了一组A家族肽的人工衍生物,并筛选了它们针对选定的微生物病原体的活性,脊椎动物细胞和昆虫。在一些情况下,我们增加了衍生物的抗菌活性,同时保留了亲本分子的低细胞毒性。此外,我们将这些肽注射到成年果蝇中,没有发现杀虫作用的证据,确认毒性水平低。因此,我们的数据表明,蜘蛛毒液线性肽可以自然地保护毒腺免受微生物定植,并且可以被修饰成更有效的抗菌剂,可以帮助将来对抗传染病。
    Spider-derived peptides with insecticidal, antimicrobial and/or cytolytic activities, also known as spider venom antimicrobial peptides (AMPs), can be found in the venoms of RTA-clade spiders. They show translational potential as therapeutic leads. A set of 52 AMPs has been described in the Chinese wolf spider (Lycosa shansia), and many have been shown to exhibit antibacterial effects. Here we explored the potential to enhance their antimicrobial activity using bioengineering. We generated a panel of artificial derivatives of an A-family peptide and screened their activity against selected microbial pathogens, vertebrate cells and insects. In several cases, we increased the antimicrobial activity of the derivatives while retaining the low cytotoxicity of the parental molecule. Furthermore, we injected the peptides into adult Drosophila suzukii and found no evidence of insecticidal effects, confirming the low levels of toxicity. Our data therefore suggest that spider venom linear peptides naturally defend the venom gland against microbial colonization and can be modified into more potent antimicrobial agents that could help to battle infectious diseases in the future.
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  • 文章类型: Journal Article
    生物测定是从自然资源中破译生物活性的主要工具,因此它们的选择和质量对于最佳生物勘探至关重要。它们都用于化合物分离/纯化/鉴定的早期阶段,并在后期阶段评估其安全性和有效性。在这次审查中,我们全面概述了发现和开发新的生物活性化合物所使用的最常见的生物测定法,重点是海洋生物资源。我们提供了选择适当的生物测定的实际考虑因素的综合列表,并详细讨论了通常用于探索抗菌药物的生物测定,抗生物膜,细胞毒性,抗病毒,抗氧化剂,和抗衰老潜力。介绍了质量控制和生物测定验证的概念,其次是安全考虑,这对于将生物活性化合物推向更高的开发阶段至关重要。最后,我们提供了一个专注于药物开发的面向应用的观点,食品补充剂,和化妆品,目前已知的海洋天然产品最具潜力的工业管道。我们强调获得可靠的生物测定结果的重要性,因为这些是基于应用程序的开发和进一步测试的起点,以及监管机构的考虑。
    Bioassays are the main tool to decipher bioactivities from natural resources thus their selection and quality are critical for optimal bioprospecting. They are used both in the early stages of compounds isolation/purification/identification, and in later stages to evaluate their safety and efficacy. In this review, we provide a comprehensive overview of the most common bioassays used in the discovery and development of new bioactive compounds with a focus on marine bioresources. We present a comprehensive list of practical considerations for selecting appropriate bioassays and discuss in detail the bioassays typically used to explore antimicrobial, antibiofilm, cytotoxic, antiviral, antioxidant, and anti-ageing potential. The concept of quality control and bioassay validation are introduced, followed by safety considerations, which are critical to advancing bioactive compounds to a higher stage of development. We conclude by providing an application-oriented view focused on the development of pharmaceuticals, food supplements, and cosmetics, the industrial pipelines where currently known marine natural products hold most potential. We highlight the importance of gaining reliable bioassay results, as these serve as a starting point for application-based development and further testing, as well as for consideration by regulatory authorities.
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  • 文章类型: Journal Article
    溴的掺入,碘或氟进入ThiaplakortoneA(1)的三环核结构,一种有效的抗疟疾海洋天然产品,据报道。尽管收益率很低,使用先前合成的Boc保护的thiaplakortoneA(2)作为后期官能化的支架,可以合成一个小型的九元文库。新的thiaplakortoneA类似物(3-11)是使用N-溴琥珀酰亚胺生成的,N-碘代琥珀酰亚胺或Diversinate™试剂。所有新类似物的化学结构均通过1D/2DNMR充分表征,UV,IR和MS数据分析。评估所有化合物对恶性疟原虫3D7(药物敏感)和Dd2(耐药)菌株的抗疟活性。与天然产物相比,在thiaplakortoneA支架的2和7位掺入卤素显示出降低抗疟疾活性。在新化合物中,单溴化类似物(化合物5)对恶性疟原虫3D7和Dd2的IC50值分别为0.559和0.058μM,显示出最佳的抗疟活性。在80μM时观察到对人细胞系(HEK293)的最小毒性。值得注意的是,大多数卤代化合物对恶性疟原虫耐药菌株显示出更大的效力。
    The incorporation of bromine, iodine or fluorine into the tricyclic core structure of thiaplakortone A (1), a potent antimalarial marine natural product, is reported. Although yields were low, it was possible to synthesise a small nine-membered library using the previously synthesised Boc-protected thiaplakortone A (2) as a scaffold for late-stage functionalisation. The new thiaplakortone A analogues (3-11) were generated using N-bromosuccinimide, N-iodosuccinimide or a Diversinate™ reagent. The chemical structures of all new analogues were fully characterised by 1D/2D NMR, UV, IR and MS data analyses. All compounds were evaluated for their antimalarial activity against Plasmodium falciparum 3D7 (drug-sensitive) and Dd2 (drug-resistant) strains. Incorporation of halogens at positions 2 and 7 of the thiaplakortone A scaffold was shown to reduce antimalarial activity compared to the natural product. Of the new compounds, the mono-brominated analogue (compound 5) displayed the best antimalarial activity with IC50 values of 0.559 and 0.058 μM against P. falciparum 3D7 and Dd2, respectively, with minimal toxicity against a human cell line (HEK293) observed at 80 μM. Of note, the majority of the halogenated compounds showed greater efficacy against the P. falciparum drug-resistant strain.
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  • 文章类型: Journal Article
    毒液是复杂的化学武器库,在动物界已经独立进化了很多次。毒液吸引了研究人员的兴趣,因为它们是一项重要的创新,为许多动物的进化成功做出了巨大贡献。它们的医学相关性为药物发现提供了巨大的潜力。在过去的十年里,毒液研究因系统生物学的应用而发生了革命性的变化,产生了一个被称为venomics的新领域。最近,生物技术在这一领域也产生了越来越大的影响。它的方法提供了在所有生物组织层面上解开和研究毒液系统的手段,鉴于它们对生命科学的巨大影响,这些关键工具极大地促进了对毒液系统组织的连贯理解,发展,生物化学,和治疗活动。即便如此,我们缺乏对将生物技术应用于毒液系统所取得的重大进展的全面概述。因此,这篇综述考虑了这些方法,见解,以及毒液研究领域生物技术应用的潜在未来发展。我们遵循生物组织和结构的水平,从研究毒液基因组蓝图和遗传机制的方法开始,跟踪基因产物及其功能表型。我们认为生物技术可以回答毒液研究中一些最紧迫的问题,特别是当多种方法结合在一起时,以及其他venomics技术。
    Venoms are complex chemical arsenals that have evolved independently many times in the animal kingdom. Venoms have attracted the interest of researchers because they are an important innovation that has contributed greatly to the evolutionary success of many animals, and their medical relevance offers significant potential for drug discovery. During the last decade, venom research has been revolutionized by the application of systems biology, giving rise to a novel field known as venomics. More recently, biotechnology has also made an increasing impact in this field. Its methods provide the means to disentangle and study venom systems across all levels of biological organization and, given their tremendous impact on the life sciences, these pivotal tools greatly facilitate the coherent understanding of venom system organization, development, biochemistry, and therapeutic activity. Even so, we lack a comprehensive overview of major advances achieved by applying biotechnology to venom systems. This review therefore considers the methods, insights, and potential future developments of biotechnological applications in the field of venom research. We follow the levels of biological organization and structure, starting with the methods used to study the genomic blueprint and genetic machinery of venoms, followed gene products and their functional phenotypes. We argue that biotechnology can answer some of the most urgent questions in venom research, particularly when multiple approaches are combined together, and with other venomics technologies.
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  • 文章类型: Systematic Review
    海洋毒液药物的相对缺乏可以归因于与有毒海洋动物合作的困难,包括如何在提取和纯化过程中保持毒液的生物活性。本系统文献综述的主要目的是研究提取和纯化水母毒液毒素时要考虑的关键因素,以最大程度地提高其在生物测定中对单一毒素表征的有效性。为所有水母的所有纯化和半纯化毒液建立了一个包含119篇同行评审研究文章的最新数据库,包括它们的净化程度,LD50,以及使用的实验毒性生物测定的类型(例如,整个动物和细胞系)。我们报告说,在所有水母中成功纯化的毒素,类Cubozoa(即,ChironexFleckeri和Carybdearastoni)的代表最高,其次是Scyphozoa和Hydrozoa。我们概述了保持水母毒液生物活性的最佳实践,包括严格的热管理,使用“自溶”提取方法和涉及尺寸排阻色谱的两步液相色谱纯化。迄今为止,盒子水母C.fleckeri是最有效的水母毒液模型,具有最多参考的提取方法和最分离的毒素,包括CfTX-A/B总之,这篇综述可以作为高效提取的资源,净化,和水母毒液毒素的鉴定。
    The relative lack of marine venom pharmaceuticals can be anecdotally attributed to difficulties in working with venomous marine animals, including how to maintain venom bioactivity during extraction and purification. The primary aim of this systematic literature review was to examine the key factors for consideration when extracting and purifying jellyfish venom toxins to maximise their effectiveness in bioassays towards the characterisation of a single toxin.An up-to-date database of 119 peer-reviewed research articles was established for all purified and semi-purified venoms across all jellyfish, including their level of purification, LD50, and the types of experimental toxicity bioassay used (e.g., whole animal and cell lines). We report that, of the toxins successfully purified across all jellyfish, the class Cubozoa (i.e., Chironex fleckeri and Carybdea rastoni) was most highly represented, followed by Scyphozoa and Hydrozoa. We outline the best practices for maintaining jellyfish venom bioactivity, including strict thermal management, using the \"autolysis\" extraction method and two-step liquid chromatography purification involving size exclusion chromatography. To date, the box jellyfish C. fleckeri has been the most effective jellyfish venom model with the most referenced extraction methods and the most isolated toxins, including CfTX-A/B. In summary, this review can be used as a resource for the efficient extraction, purification, and identification of jellyfish venom toxins.
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  • 文章类型: Journal Article
    蚂蚁(Formicidae)的毒液是新型生物活性分子的有希望的来源,具有临床和农业应用的潜力。然而,尽管蚂蚁种类丰富多样,在生物勘探计划中,只有一小部分资源经过了彻底的检查。先前针对中欧蚂蚁(Myrmicinae亚科)毒液的研究发现了许多类似抗菌肽(AMPs)的短线性十肽和九肽。这里,我们描述了来自中欧Myrmicine蚂蚁Myrmicarubra和Myrmicaruginodis的10种新型AMP样肽的计算机模拟方法和生物活性分析。使用已知的蚁毒肽序列作为查询,我们筛选了两个物种的毒腺转录组。我们发现了9种新颖的十肽和一种新颖的非肽的转录本。在由细胞毒性和抗病毒测试组成的广泛的分析中合成相应的肽用于生物活性分析。杀虫,和抗菌活性。U-MYRTX-Mrug5a对几种细菌显示出中等有效的抗菌作用,包括临床相关病原体,如单核细胞增生李斯特菌和表皮葡萄球菌,但是高浓度的细胞毒性可以忽略不计.U-MYRTX-Mrug5a是,因此,可能是开发新的基于肽的抗生素的线索。
    The venoms of ants (Formicidae) are a promising source of novel bioactive molecules with potential for clinical and agricultural applications. However, despite the rich diversity of ant species, only a fraction of this vast resource has been thoroughly examined in bioprospecting programs. Previous studies focusing on the venom of Central European ants (subfamily Myrmicinae) identified a number of short linear decapeptides and nonapeptides resembling antimicrobial peptides (AMPs). Here, we describe the in silico approach and bioactivity profiling of 10 novel AMP-like peptides from the fellow Central European myrmicine ants Myrmica rubra and Myrmica ruginodis. Using the sequences of known ant venom peptides as queries, we screened the venom gland transcriptomes of both species. We found transcripts of nine novel decapeptides and one novel nonapeptide. The corresponding peptides were synthesized for bioactivity profiling in a broad panel of assays consisting of tests for cytotoxicity as well as antiviral, insecticidal, and antimicrobial activity. U-MYRTX-Mrug5a showed moderately potent antimicrobial effects against several bacteria, including clinically relevant pathogens such as Listeria monocytogenes and Staphylococcus epidermidis, but high concentrations showed negligible cytotoxicity. U-MYRTX-Mrug5a is, therefore, a probable lead for the development of novel peptide-based antibiotics.
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  • 文章类型: Journal Article
    为了进一步扩大NatureBank开放存取复合库,澳大利亚海洋海绵的化学研究,Ianthellabasta,因为从该海绵的提取物的UHPLC-MS分析表明存在新的生物碱。对CH2Cl2/MeOHI.basta提取物的大规模提取和质量导向分离研究导致了一种新的溴酪氨酸衍生生物碱的纯化,5-去溴氰尿苷H(1),连同已知的海洋天然产品,ianthesineE(2).在详细的光谱和光谱数据分析之后确定新化合物的化学结构。这两种化合物(1和2)以及以前从NatureBank开放访问库报道的七个海洋溴酪氨酸生物碱,其中包括psammaplysinsF(3)和H(4),bastadins4(5),8(6)和13(7)气硫素(8)和六adellinA(9),评估了它们对出鞘的第三期幼虫的杀线虫活性,反刍动物的高致病性寄生虫。在九种化合物中,bastadin8(6),hexadellinA(9)和bastadin4(5)在暴露72小时后显示出对幼虫运动的抑制作用,IC50值为1.6µM,10.0µM和33.3µM,分别。
    In order to further expand the NatureBank open access compound library, chemical investigations of the Australian marine sponge, Ianthella basta, were undertaken since UHPLC-MS analysis of the extract from this sponge indicated the presence of a new alkaloid. Large-scale extraction and mass-directed isolation studies on the CH2Cl2/MeOH I. basta extract resulted in the purification of a new bromotyrosine-derived alkaloid, 5-debromopurealidin H (1), along with the known marine natural product, ianthesine E (2). The chemical structure of the new compound was determined following detailed spectroscopic and spectrometric data analysis. These two compounds (1 and 2) along with seven previously reported marine bromotyrosine alkaloids from the NatureBank open access library, which included psammaplysins F (3) and H (4), bastadins 4 (5), 8 (6) and 13 (7), aerothionin (8) and hexadellin A (9), were evaluated for their nematocidal activity against exsheathed third-stage larvae of Haemonchus contortus, a highly pathogenic parasite of ruminants. Of the nine compounds, bastadin 8 (6), hexadellin A (9) and bastadin 4 (5) showed inhibition towards larval motility after 72 h of exposure with IC50 values of 1.6 µM, 10.0 µM and 33.3 µM, respectively.
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  • 文章类型: Journal Article
    尽管患病率低,胰腺癌(PC)是最致命的癌症之一,通常在早期阶段表现为沉默,在晚期阶段预后极差,通常与高度转移有关。在追求创新的治疗方法方面已经做出了许多努力,从寻找新的细胞毒性药物和其他生物活性化合物,发展更有针对性的方法,包括改进的药物输送装置。海洋生物技术通过提供源自不同生物的新化学线索和材料,为这一追求做出了贡献。在这次审查中,解决了PC的海洋生物发现问题,特别是关于海洋无脊椎动物(即海绵,软体动物,和苔藓虫),海藻,真菌,和细菌。此外,开发基于海洋来源化合物的生物材料,特别是壳聚糖,岩藻聚糖,和藻酸盐,用于生产先进的癌症疗法,也讨论了。强调了药物递送在新的癌症治疗中可以发挥的关键作用,因为治疗结果需要改善,以给患者带来进一步的希望。
    Despite its low prevalence, pancreatic cancer (PC) is one of the deadliest, typically characterised as silent in early stages and with a dramatically poor prognosis when in its advanced stages, commonly associated with a high degree of metastasis. Many efforts have been made in pursuing innovative therapeutical approaches, from the search for new cytotoxic drugs and other bioactive compounds, to the development of more targeted approaches, including improved drug delivery devices. Marine biotechnology has been contributing to this quest by providing new chemical leads and materials originating from different organisms. In this review, marine biodiscovery for PC is addressed, particularly regarding marine invertebrates (namely sponges, molluscs, and bryozoans), seaweeds, fungi, and bacteria. In addition, the development of biomaterials based on marine-originating compounds, particularly chitosan, fucoidan, and alginate, for the production of advanced cancer therapies, is also discussed. The key role that drug delivery can play in new cancer treatments is highlighted, as therapeutical outcomes need to be improved to give further hope to patients.
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    文章类型: Journal Article
    随着非人类遗传资源在研究和开发中的传统使用越来越多地让给计算机化的研究活动,当前的获取和利益分享框架面临迫在眉睫的身份危机。在数字序列信息的监管方面缺乏国际共识,这是全球北方和全球南方之间社会分裂的临界点,“开放数据”的文化在高收入国家带来了不可估量的机会,并威胁着脆弱社区的数字生物盗版浪潮。本文批判性地评估了这些问题,并考虑了借鉴土著数据主权原则的解决方案。要做到这一点,它利用昆士兰州最近的经验来探索法律如何调和和平衡这些相互竞争的利益。昆士兰州是地球上生物多样性最多的地区之一,拥有具有全球竞争力的生命科学行业,拥有充满活力和长期的土著居民,它提供了一个独特的案例研究。
    As the traditional use of non-human genetic resources in research and development is increasingly ceded to computerised research activities, current frameworks for access and benefit-sharing face an impending identity crisis. The absence of international consensus on the regulation of digital sequence information presents a critical point of social division between the Global North and Global South, whereby a culture of \"open data\" promises immeasurable opportunity in high-income nations and threatens a wave of digital bio-piracy for vulnerable communities. This article critically evaluates these problems and considers solutions which draw on Indigenous Data Sovereignty principles. To do so, it uses the recent experience in Queensland to explore how the law might reconcile and balance these competing interests. Insofar as Queensland is one of the most mega biodiverse regions on earth, boasts a globally competitive life sciences sector, and has a vibrant and longstanding Indigenous population, it offers a unique case study.
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  • 文章类型: Journal Article
    气单胞菌属包括广泛分布在水生生境中的革兰氏阴性杆菌,也可以在陆地环境中发现,并与人类和动物密切相关。气单胞菌属。是特别通用的细菌,具有高度的基因组可塑性和显着的能力,以适应不同的环境和极端条件。由于主要与它们的致病潜力有关,气单胞菌的生物技术潜力研究。与其他细菌组相比相当稀缺。尽管如此,多年来的研究一直在暗示这个细菌群的一些有趣的隐藏潜力,特别是随着全基因组测序的最新进展,揭示气单胞菌属。作为发现新型工业生物催化剂的有趣候选者,生物修复策略,和生物聚酯生产。在这种情况下,本研究旨在概述气单胞菌属报道的主要生物技术应用,并为进一步探索这些经常被忽视的生物技术提供新的见解,然而令人着迷,细菌。
    The genus Aeromonas comprises Gram-negative bacilli widely distributed in aquatic habitats that can also be found in the terrestrial environment and in close association with humans and animals. Aeromonas spp. are particularly versatile bacteria, with high genomic plasticity and notable capacity to adapt to different environments and extreme conditions. On account of being mostly associated with their pathogenic potential, research on the biotechnological potentialities of Aeromonas spp. is considerably scarce when compared to other bacterial groups. Nonetheless, studies over the years have been hinting at several interesting hidden potentialities in this bacterial group, especially with the recent advances in whole-genome sequencing, unveiling Aeromonas spp. as interesting candidates for the discovery of novel industrial biocatalysts, bioremediation strategies, and biopolyester production. In this context, the present study aims to provide an overview of the main biotechnological applications reported in the genus Aeromonas and provide new insights into the further exploration of these frequently overlooked, yet fascinating, bacteria.
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