behavioral phenotype

行为表型
  • 文章类型: Journal Article
    不同的肠道微生物群落组成或在群落组成中没有任何明显的差异,可以强调在多代中保持和选择性繁殖的不同动物行为表型。在微生物群-肠-脑轴框架内运行,我们预计选择性繁殖的斑马鱼(Daniorerio)之间的肠道微生物组分布存在差异,以显示大胆和害羞的人格类型。这将突出肠道微生物介导的对宿主行为的影响。为此,我们通过Miseq从大胆和害羞的斑马鱼个体(n=10)的肠道中扩增并测序了16SrRNA基因的片段。我们发现两种行为表型的组内微生物多样性和组间微生物群落组成均无显着差异。有趣的是,虽然没有统计学上的不同,我们确定粗体表型的肠道微生物群落主要由伯克霍德里亚科,微植物科,和丙酸杆菌科。相比之下,害羞的表型主要是贝参草科,Pirelullacaeae,根瘤菌,和Rubinishaeraceae。两种表型之间的肠道微生物群分布没有任何显着差异,这表明在该物种中,可能存在一个稳定的“核心”肠道微生物组,不管行为表型,或者可能,肠道微生物群在调节这种选择宿主行为方面的作用有限。这是第一项研究,以表征肠道微生物群落的斑马鱼的不同先天行为表型(不被认为是生态失调状态),并且不依赖于抗生素或益生菌治疗来诱导行为变化。这些研究对于我们理解肠道微生物群对规范动物行为的调节作用至关重要。
    Different animal behavioral phenotypes maintained and selectively bred over multiple generations may be underscored by dissimilar gut microbial community compositions or not have any significant dissimilarity in community composition. Operating within the microbiota-gut-brain axis framework, we anticipated differences in gut microbiome profiles between zebrafish (Danio rerio) selectively bred to display the bold and shy personality types. This would highlight gut microbe-mediated effects on host behavior. To this end, we amplified and sequenced a fragment of the 16S rRNA gene from the guts of bold and shy zebrafish individuals (n=10) via Miseq. We uncovered no significant difference in within-group microbial diversity nor between-group microbial community composition of the two behavioral phenotypes. Interestingly, though not statistically different, we determined that the gut microbial community of the bold phenotype was dominated by Burkholderiaceae, Micropepsaceae, and Propionibacteriaceae. In contrast, the shy phenotype was dominated by Beijerinckaceae, Pirelullacaeae, Rhizobiales_Incertis_Sedis, and Rubinishaeraceae. The absence of any significant difference in gut microbiota profiles between the two phenotypes would suggest that in this species, there might exist a stable \"core\" gut microbiome, regardless of behavioral phenotypes, and or possibly, a limited role for the gut microbiota in modulating this selected-for host behavior. This is the first study to characterize the gut microbial community of distinct innate behavioral phenotypes of the zebrafish (that are not considered dysbiotic states) and not rely on antibiotic or probiotic treatments to induce changes in behavior. Such studies are crucial to our understanding of the modulating impacts of the gut microbiome on normative animal behavior.
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  • 文章类型: Journal Article
    近年来,人们对探索动物应激生理学的细微差别越来越感兴趣,特别是关于性别等参数,和行为表型相关的变异,这对于理解表型变异及其在进化选择中的作用至关重要。然而,关于上述参数,慢性应激源如何影响机体应激生理学仍然存在很大的不足。与外周组织的反应有关的空隙甚至更宽,比如皮肤,与环境接触面积最高的器官。因此,我们根据斑马鱼的胆量和身体状况对它们进行行为分组,全身皮质醇反应,同时检查转录反应,全球DNA甲基化,慢性拥挤时皮肤的DNA氧化损伤。在基线条件下,明确区分粗体和害羞的表型被发现,尤其是男性。男性的大胆指数得分分布比女性的均匀性更高。关于身体状况对慢性拥挤的反应,与大胆的男性相比,害羞的男性表现出明显的相对下降,虽然这种趋势对女性来说并不成立。qPCR数据揭示了关键基因的独特表达模式,这些基因在细胞过程中发挥关键作用,如应激介导的基因调控,免疫反应,氧化应激保护,在有和没有慢性拥挤压力的情况下,通过跨行为表型和性别的表观遗传修饰来维持基因组完整性。全球DNA甲基化水平仅在长期拥挤的害羞男性中显着下降,并确定了氧化DNA损伤的性别/行为表型依赖性趋势。
    In recent years, there has been a burgeoning interest in exploring the nuances of animal stress physiology, particularly in relation to parameters such as sex, and behavioral phenotype-dependent variations, that is crucial for understanding phenotypic variation and its role in evolutionary selection. However, a significant dearth remains in how chronic stressors affect organismal stress physiology concerning the aforesaid parameters. This void is even wider pertaining to the response of peripheral tissues, such as the skin, the organ with the highest surface contact area with the environment. Hence, we behaviorally grouped the zebrafishes based on their boldness and the body condition, whole-body cortisol response, along with examining the transcriptional response, global DNA methylome, and oxidative DNA damage in the skin upon chronic crowding. Upon baseline conditions, clear distinction between bold and shy phenotypes were found, particularly in males. The boldness index score distribution exhibited greater uniformity in males than in females. Regarding the body condition response to chronic crowding, shy males showed a significant relative decline compared to their bold counterparts, while this trend did not hold true for females. qPCR data revealed distinctive expression patterns in key genes which play critical roles in cellular processes such as stress mediated gene regulation, immune response, oxidative stress protection, and maintenance of genomic integrity through epigenetic modifications across behavioral phenotypes and sexes under both with and without chronic crowding stress. Global DNA methylation levels significantly declined only in chronically crowded shy males, and sex/behavioral phenotype-dependent trends in oxidative DNA damage were identified.
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  • 文章类型: Journal Article
    体育锻炼是一种强有力的生活方式干预。在它的许多好处中,它以增强认知能力而闻名。然而,这些好处可以在多大程度上跨代传播(跨代遗传到F1,跨代遗传到F2及以后)仍然是一个有限的理解话题。我们已经证明,体育锻炼带来的认知改善可以从父母遗传给他们的后代,证明代际效应。所以,我们开始探索这些增强是否可能跨代扩展,影响F2代。在这项研究中,我们最初检查了第二代(F2)雄性小鼠的行为特征,其祖父(F0)进行了运动干预。我们的发现表明,具有身体活跃的F0祖父母的F2小鼠表现出显着改善的记忆力,与久坐的F0祖细胞的对应物相比,包含空间和非空间信息,并首次证明了体育锻炼引起的认知增强的跨代遗传。令人惊讶的是,而F2内存改善(如F1),实验组和对照组之间的成年海马神经发生保持不变(与F1不同)。此外,我们对海马中的smallRNA序列的分析确定了35种差异表达的miRNA与重要的脑功能类别相关。值得注意的是,其中两个miRNA,miRNA-144和miRNA-298与认知表现表现出强烈的负相关。这些发现强调了与运动相关的认知益处的持久跨代传播,即使经过两代人。此外,他们认为适度的运动训练可以产生持久的积极影响,可能是由一组特定的miRNA精心策划的,这些miRNA在多代中发挥作用。重要性声明体育锻炼以其对身体健康,特别是对大脑功能和健康的积极影响而闻名。在这里,我们测试这些影响是否从锻炼的祖父母继承到第二代。我们在这里首次报道了孙子认知中中度运动诱发的祖父特征的跨代遗传,尽管F1中诱导的一些细胞变化在F2中消失,并表明适度的运动训练比以前认为的效果更持久,最有可能是由一小组跨世代作用的microRNAs介导的。
    Physical exercise is a robust lifestyle intervention known for its enhancement of cognitive abilities. Nevertheless, the extent to which these benefits can be transmitted across generations (intergenerational inheritance to F1, and transgenerational to F2 and beyond) remains a topic of limited comprehension. We have already shown that cognitive improvements resulting from physical exercise can be inherited from parents to their offspring, proving intergenerational effects. So, we set out to explore whether these enhancements might extend transgenerationally, impacting the F2 generation. In this study, we initially examined the behavioral traits of second generation (F2) male mice, whose grandfathers (F0) had an exercise intervention. Our findings revealed that F2 mice with physically active grandpaternal F0 progenitors displayed significantly improved memory recall, encompassing both spatial and non-spatial information when compared to their counterparts from sedentary F0 progenitors, and proving for the first time the transgenerational inheritance of physical exercise induced cognitive enhancement. Surprisingly, while F2 memory improved (as was the case with F1), adult hippocampal neurogenesis remained unchanged between experimental and control groups (unlike in F1). Additionally, our analysis of small RNA sequences in the hippocampus identified 35 differentially expressed miRNAs linked to important brain function categories. Notably, two of these miRNAs, miRNA-144 and miRNA-298, displayed a robust negative correlation with cognitive performance. These findings highlight the enduring transgenerational transmission of cognitive benefits associated with exercise, even after two generations, suggesting that moderate exercise training can have lasting positive effects, possibly orchestrated by a specific set of miRNAs that exert their influence across multiple generations.
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  • 文章类型: Journal Article
    背景:Sotos综合征是由NSD1基因(包含核受体结合SET结构域的蛋白质1)变异体引起的遗传性疾病,其特征是过度生长,大头畸形,学习障碍,同时出现神经精神症状.方法:从PubMed和GoogleScholar数据库中选择并分析2002-2023年发表的文献来源。结果:在Sotos综合征的儿童和青少年中观察到神经精神症状。大多数人都有智力障碍或临界智力。言语智商高于表现智商。个人在表达语言时表现出困难。侵略是由父母报告的。儿童表现出自闭症行为,多动症,基于恐惧症的焦虑,和早睡时间。结论:Sotos综合征与儿童神经精神障碍有关。智力和语言发展缓慢,激进的爆发,焦虑,自闭症谱系障碍,多动症出现在最新的研究中。Sotos综合征患者需要全面的援助来应对困难领域。目前仍然缺乏对这些儿童的发育特征以及通过提供多学科长期医学来改善心理社会适应的可能性的研究,教育,和社会关怀。
    Background: Sotos syndrome is a genetic disorder caused by NSD1 gene (nuclear receptor binding SET domain containing protein 1) variants and characterized by overgrowth, macrocephaly, learning disabilities, and co-occurring neuropsychiatric symptoms. Methods: Literature sources published in 2002-2023 were selected and analyzed from PubMed and Google Scholar databases. Results: Neuropsychiatric symptoms are observed among children and adolescents with Sotos syndrome. The majority have intellectual disabilities or borderline intellect. Verbal IQ is higher than performance IQ. Individuals display difficulties in expressing language. Aggression is reported by parents. Children express autistic behavior, ADHD, anxiety based on phobias, and early bedtime-wake times. Conclusions: Sotos syndrome is associated with neuropsychiatric disorders in children. Slow intellectual and language development, aggressive outbursts, anxiety, autism spectrum disorder, and hyperactivity are present in the newest studies. Comprehensive assistance is needed for Sotos syndrome patients in responding to areas of difficulty. There is still a lack of research on the developmental characteristics of these children and the possibilities of improving psychosocial adaptation by providing multidisciplinary long-term medical, educational, and social care.
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  • 文章类型: Journal Article
    本研究旨在描述具有SYNGAP1-ID的个体的行为特征。30名3-18岁诊断为SYNGAP1-ID的个体的父母/照顾者和21名通常发育中的个体完成了Vineland-3适应性行为量表和儿童行为清单。我们发现,与通常开发的对照相比,具有SYNGAP1-ID的那些在几乎所有领域都表现出较少的适应性行为和较高水平的内在化和外在化行为。有一些证据表明,这些差异在年龄较大的儿童中最大,在患有癫痫的患者中更为明显。SYNGAP1-ID表型的这种表征显着帮助我们理解该人群的行为特征,并且是朝着开发定制干预措施迈出的一步。
    This study aimed to describe the behavioral profile of individuals with SYNGAP1-ID. Parents/carers of 30 individuals aged 3-18 years old with a diagnosis of SYNGAP1-ID and 21 typically developing individuals completed the Vineland-3 Adaptive Behavior Scale and the Child Behavior Checklist. We found that those with SYNGAP1-ID showed fewer adaptive behaviors and higher levels of internalizing and externalizing behaviors across almost all domains compared to typically developing controls. There was some evidence that these differences were greatest in older children, and more apparent in those with co-occuring epilepsy. This characterization of the phenotype of SYNGAP1-ID significantly aids our understanding of the behavioral profile of this population and is a step towards the development of tailored interventions.
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  • 文章类型: Journal Article
    进行性肌阵挛性癫痫1型(EPM1)是一种常染色体隐性遗传的儿童-青春期发作的神经退行性疾病,由胱抑素B(CSTB基因)突变引起。EPM1的主要临床表现是进行性,刺激敏感,特别是作用诱导的肌阵鸣。胱抑素B缺陷小鼠模型,Cstb-/-,已被描述为表现为肌阵挛性癫痫和进行性共济失调。在这里,我们描述了在纯等基因129S2/SvHsd背景下Cstb-/-小鼠模型的深入行为表型分析的结果,涵盖了1.5至6个月的年龄。我们开发了一种从Cstb-/-小鼠的视频记录中软件辅助检测肌阵鸣的方法。此外,我们观察到小鼠过度活跃,表现出减少的惊吓反应,运动协调问题和缺乏抑制作用。我们曾经,然而,不能证明他们共济失调的表型。Cstb-/-小鼠的这种详细的行为表型分析揭示了这种小鼠模型的新方面。Cstb-/-小鼠的运动问题的性质似乎比最初描述的更复杂并且更类似于人类表型。
    Progressive myoclonus epilepsy type 1 (EPM1) is an autosomal recessively inherited childhood-adolescence onset neurodegenerative disease caused by mutations in the cystatin B (CSTB gene). The key clinical manifestation in EPM1 is progressive, stimulus-sensitive, in particular action-induced myoclonus. The cystatin B-deficient mouse model, Cstb-/-, has been described to present with myoclonic seizures and progressive ataxia. Here we describe results from in-depth behavioral phenotyping of the Cstb-/- mouse model in pure isogenic 129S2/SvHsd background covering ages from 1.5 to 6 months. We developed a method for software-assisted detection of myoclonus from video recordings of the Cstb-/- mice. Additionally, we observed that the mice were hyperactive and showed reduced startle response, problems in motor coordination and lack of inhibition. We were, however, not able to demonstrate an ataxic phenotype in them. This detailed behavioral phenotyping of the Cstb-/- mice reveals new aspects of this mouse model. The nature of the motor problems in the Cstb-/- mice seems to be more complex and more resembling the human phenotype than initially described.
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  • 文章类型: Journal Article
    SYNGAP1相关障碍(SYNGAP1-RD)是一种神经发育障碍,通常与癫痫有关。自闭症谱系障碍(ASD),和破坏性行为。在这项研究中,根据在多学科三级护理专科门诊就诊范围内进行的行为筛查,对11例连续SYNGAP1-RD患者的行为问题进行了描述和量化.然后使用异常行为清单社区(ABC-C)的结果,将行为表型与在神经发育障碍背景下发生的ASD行为问题和其他癫痫遗传原因的公开样本进行比较。一种凭经验得出的结果衡量标准。我们报告了围绕个人问题行为的常见事件。此外,我们报告了照顾者的管理方法和问题行为对家庭的影响。我们的研究结果表明,SYNGAP1-RD与ASD的行为特征与其他遗传原因的发育性和癫痫性脑病之间存在许多共性,并强调严重的行为问题是SYNGAP1-RD的特定行为表型。
    SYNGAP1-related disorder (SYNGAP1-RD) is a neurodevelopmental disorder that is commonly associated with epilepsy, autism spectrum disorder (ASD), and disruptive behaviors. In this study, behavior problems in 11 consecutive patients with SYNGAP1-RD are described and quantified based on a behavioral screening conducted within the context of a multi-disciplinary tertiary care specialty clinic visit. The behavioral phenotype was then compared to published samples of behavior problems in ASD and other genetic cause of epilepsy occurring in the context of neurodevelopmental disorders using results from the Aberrant Behavior Checklist-Community (ABC-C), an empirically derived outcome measure. We report common antecedent and consequent events surrounding problem behavior across individuals. Additionally, we report on the management approach of caregivers and the impact of problem behaviors on the family. Our results suggest a number of commonalities between behavioral profiles in SYNGAP1-RD with ASD and other genetic causes of developmental and epileptic encephalopathies, and also highlight severe behavior problems as a specific behavioral phenotype of SYNGAP1-RD.
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  • 文章类型: Journal Article
    脆性X综合征(FXS)是导致自闭症谱系障碍(ASD)的最常见的单基因疾病。虽然在FXS中观察到显著的性别差异,很少有研究集中在FXS的表型特征以及不同性别的脑病理改变和基因表达的差异上。因此,我们分析了2个月大的雄性和雌性Fmr1KO和C57小鼠在自闭症样行为和树突状脊柱发育方面的性别差异,并在转录组水平评估了机制.结果表明,Fmr1KO小鼠在自闭症样行为和树突状脊柱密度方面表现出性别差异。与女性相比,男性对焦虑有更严重的影响,重复的刻板印象样的行为,和社交,具有较高的树突脊柱密度。此外,基于KEGG途径富集和蛋白-蛋白相互作用(PPI)分析,筛选了2个男性偏倚和5个女性偏倚表达基因.总之,我们的研究结果表明,Fmr1基因的突变导致相关基因的异常表达,并通过影响大脑发育和功能结构来影响Fmr1KO小鼠的性别分化行为表型,并建议未来的研究应侧重于纳入女性受试者,以全面反映FXS在两性中的分化,并制定更精确和有效的治疗策略。
    Fragile X syndrome (FXS) is the most common single gene disorder contributing to autism spectrum disorder (ASD). Although significant sex differences are observed in FXS, few studies have focused on the phenotypic characteristics as well as the differences in brain pathological changes and gene expression in FXS by sex. Therefore, we analyzed sex differences in autism-like behavior and dendritic spine development in two-month-old male and female Fmr1 KO and C57 mice and evaluated the mechanisms at transcriptome level. Results suggest that Fmr1 KO mice display sex differences in autism-like behavior and dendritic spine density. Compared to females, male had more severe effects on anxiety, repetitive stereotype-like behaviors, and socializing, with higher dendritic spine density. Furthermore, two male-biased and five female-biased expressed genes were screened based on KEGG pathway enrichment and protein-protein interaction (PPI) analyses. In conclusion, our findings show mutations in the Fmr1 gene lead to aberrant expression of related genes and affect the sex-differentiated behavioral phenotypes of Fmr1 KO mice by affecting brain development and functional architecture, and suggest future studies should focus on including female subjects to comprehensively reflect the differentiation of FXS in both sexes and develop more precise and effective therapeutic strategies.
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  • 文章类型: Observational Study
    背景:移动健康技术和机器学习方法的进步已经扩展了肥胖治疗中行为表型的框架,以探索时间变化的动力学。
    目的:本研究旨在调查肥胖干预过程中行为变化的动态,并使用混合机器学习方法确定与体重变化相关的行为表型。
    方法:总共,88名年龄和性别特定BMI≥85百分位数的儿童和青少年(8-16岁;62/88,男性占71%)参加了研究。根据干预期间遵守5个行为目标的时间动态,使用混合2阶段程序鉴定行为表型。通过从每个参与者的功能数据中提取主成分因子,使用功能主成分分析来确定行为表型。弹性网络回归用于研究行为表型与体重变化之间的关联。
    结果:功能主成分分析确定了2种独特的行为表型,这被称为高或低依从性水平和晚期或早期行为改变。第一种表型解释了每个因素的47%至69%,而第二种表型解释了总行为动力学的11%至17%。高或低依从性水平与体重变化有关(β=-.0766,95%CI-.1245至-.0312),水果和蔬菜摄入量(β=.1770,95%CI.0642-.2561),运动(β=-.0711,95%CI-.0892至-.0363),饮用水(β=-.0203,95%CI-.0218至-.0123),和睡眠时间。晚期或早期行为变化与屏幕时间变化的体重减轻显着相关(β=.0440,95%CI.0186-.0550),水果和蔬菜摄入量(β=-.1177,95%CI-.1441至-.0680),和睡眠持续时间(β=-.0991,95%CI-.1254至-.0597)。
    结论:总体依从性水平,或高或低坚持水平,与健康相关的行为逐渐改善或恶化,或者后期或早期的行为改变,与肥胖相关的独特生活方式行为与体重减轻的相关性不同。大部分健康相关行为在整个干预过程中保持稳定,这表明卫生保健专业人员应密切监测干预早期阶段的变化。
    背景:临床研究信息科学KCT0004137;https://tinyurl.com/ytxr83ay。
    Advancements in mobile health technologies and machine learning approaches have expanded the framework of behavioral phenotypes in obesity treatment to explore the dynamics of temporal changes.
    This study aimed to investigate the dynamics of behavioral changes during obesity intervention and identify behavioral phenotypes associated with weight change using a hybrid machine learning approach.
    In total, 88 children and adolescents (ages 8-16 years; 62/88, 71% male) with age- and sex-specific BMI ≥85th percentile participated in the study. Behavioral phenotypes were identified using a hybrid 2-stage procedure based on the temporal dynamics of adherence to the 5 behavioral goals during the intervention. Functional principal component analysis was used to determine behavioral phenotypes by extracting principal component factors from the functional data of each participant. Elastic net regression was used to investigate the association between behavioral phenotypes and weight change.
    Functional principal component analysis identified 2 distinctive behavioral phenotypes, which were named the high or low adherence level and late or early behavior change. The first phenotype explained 47% to 69% of each factor, whereas the second phenotype explained 11% to 17% of the total behavioral dynamics. High or low adherence level was associated with weight change for adherence to screen time (β=-.0766, 95% CI -.1245 to -.0312), fruit and vegetable intake (β=.1770, 95% CI .0642-.2561), exercise (β=-.0711, 95% CI -.0892 to -.0363), drinking water (β=-.0203, 95% CI -.0218 to -.0123), and sleep duration. Late or early behavioral changes were significantly associated with weight loss for changes in screen time (β=.0440, 95% CI .0186-.0550), fruit and vegetable intake (β=-.1177, 95% CI -.1441 to -.0680), and sleep duration (β=-.0991, 95% CI -.1254 to -.0597).
    Overall level of adherence, or the high or low adherence level, and a gradual improvement or deterioration in health-related behaviors, or the late or early behavior change, were differently associated with weight loss for distinctive obesity-related lifestyle behaviors. A large proportion of health-related behaviors remained stable throughout the intervention, which indicates that health care professionals should closely monitor changes made during the early stages of the intervention.
    Clinical Research Information Science KCT0004137; https://tinyurl.com/ytxr83ay.
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  • 文章类型: Journal Article
    斑马鱼的行为在生物医学和环境化学生物活性研究中越来越普遍。根据年龄,多种实验领域的大小已用于测量斑马鱼的光致发光,观察到的端点,和仪表,在其他因素中。然而,对方法学参数可能影响幼稚行为表现和行为变化检测的程度知之甚少。在这里,我们测量了跨竞技场大小的幼稚幼体斑马鱼的光运动和行为特征。然后我们用模型神经兴奋剂咖啡因进行浓度反应研究,再次跨越各种竞技场维度。我们发现未暴露鱼类的总游泳距离随着竞技场大小呈对数增加,与周长有关,area,和音量。光/暗过渡期间的光运动响应也随着竞技场大小而增加。咖啡因暴露后,总行进距离显著(p<0.001)受井眼大小影响,咖啡因治疗(p<0.001),以及这两个实验因素的相互作用(p<0.001)。此外,行为反应曲线显示96孔板和较大孔径之间的差异。双相反应,在较低浓度下进行刺激,在最高浓度下进行折射,仅在96孔大小的黑暗条件下观察到,尽管在光线下几乎没有发现任何影响。然而,在研究的最高咖啡因处理水平下,在光照和黑暗时期的较大井中,游泳行为发生了显着变化(p<0.1)。我们的结果表明斑马鱼在较大的竞技场游泳更多,竞技场大小会影响对咖啡因的行为反应概况,尽管差异主要是在非常小的和大的竞技场之间观察到的。Further,选择竞技场尺寸时应仔细考虑,因为小井可能会导致限制,而较大的孔可能会有差异地反映生物学相关的影响。这些发现可以提高实验设计之间的可比性,并证明了理解混杂方法变量的重要性。
    Zebrafish behavior is increasingly common in biomedical and environmental studies of chemical bioactivity. Multiple experimental arena sizes have been used to measure photolocomotion in zebrafish depending on age, endpoints observed, and instrumentation, among other factors. However, the extent to which methodological parameters may influence naïve behavioral performance and detection of behavioral changes is poorly understood. Here we measured photolocomotion and behavioral profiles of naïve larval zebrafish across arena sizes. We then performed concentration response studies with the model neurostimulant caffeine, again across various arena dimensions. We found total swimming distance of unexposed fish to increase logarithmically with arena size, which as related to circumference, area, and volume. Photomotor response during light/dark transitions also increased with arena size. Following caffeine exposure, total distance travelled was significantly (p < 0.001) affected by well size, caffeine treatment (p < 0.001), and the interaction of these two experimental factors (p < 0.001). In addition, behavioral response profiles showed differences between 96 well plates and larger well sizes. Biphasic response, with stimulation at lower concentrations and refraction at the highest concentration, was observed in dark conditions for the 96 well size only, though almost no effects were identified in the light. However, swimming behavior was significantly (p < 0.1) altered in the highest studied caffeine treatment level in larger well sizes during both light and dark periods. Our results indicate zebrafish swim more in larger arenas and arena size influences behavioral response profiles to caffeine, though differences were mostly observed between very small and large arenas. Further, careful consideration should be given when choosing arena size, because small wells may lead to restriction, while larger wells may differentially reflect biologically relevant effects. These findings can improve comparability among experimental designs and demonstrates the importance of understanding confounding methodological variables.
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