Zebrafish Proteins

斑马鱼蛋白质类
  • 文章类型: News
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  • 文章类型: Journal Article
    脑膜对大脑功能至关重要,但是脑膜细胞类型和细胞间相互作用的多样性尚未得到彻底检查。在这里,我们确定了斑马鱼软脑膜中的脑膜淋巴支持细胞(mLSCs)群体,它们被专门标记为ependymin。形态学上,mLSCs形成包裹大部分软脑膜血管和所有壁淋巴管内皮细胞(muLEC)的膜结构。基于其独特的细胞形态和转录谱,mLSC被表征为不同于所有目前已知的脑膜细胞类型的独特细胞类型。由于支持结构的形成和淋巴管生成因子的产生,mLSCs不仅促进muLEC发育,而且维持muLEC在软脑膜中的分散分布,但也需要在消融后进行muLEC再生。这项研究描述了一种新发现的软脑膜细胞类型,mLSC,这是muLEC开发所需要的,维护,和再生。
    The meninges are critical for the brain functions, but the diversity of meningeal cell types and intercellular interactions have yet to be thoroughly examined. Here we identify a population of meningeal lymphatic supporting cells (mLSCs) in the zebrafish leptomeninges, which are specifically labeled by ependymin. Morphologically, mLSCs form membranous structures that enwrap the majority of leptomeningeal blood vessels and all the mural lymphatic endothelial cells (muLECs). Based on its unique cellular morphologies and transcriptional profile, mLSC is characterized as a unique cell type different from all the currently known meningeal cell types. Because of the formation of supportive structures and production of pro-lymphangiogenic factors, mLSCs not only promote muLEC development and maintain the dispersed distributions of muLECs in the leptomeninges, but also are required for muLEC regeneration after ablation. This study characterizes a newly identified cell type in leptomeninges, mLSC, which is required for muLEC development, maintenance, and regeneration.
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  • 文章类型: Journal Article
    线粒体相关的神经退行性疾病与初级纤毛功能的破坏有关。已在Leigh综合征中发现内源性线粒体复合物I成分NDUFAFF2的突变,严重的遗传性线粒体病.ARMC9中的突变,编码一种基础体蛋白,因为Joubert综合征,大脑有缺陷的纤毛病,肾,和眼睛。这里,我们报道了线粒体代谢和初级纤毛信号之间的机制联系。我们发现NDUFAF2的丢失在体外和体内引起线粒体和纤毛缺陷,并将NDUFAF2鉴定为ARMC9的结合伴侣。我们还发现,NDUFAFF2对于纤毛形成既必要又足够,并且NDUFAFF2的外源表达挽救了已知ARMC9缺乏症患者细胞中观察到的纤毛和线粒体缺陷。补充NAD可恢复ARMC9缺陷细胞和斑马鱼的线粒体和纤毛功能障碍,并改善ARMC9缺陷患者的眼运动和运动缺陷。目前的结果提供了一个令人信服的机械联系,在人类研究的证据支持下,在初级纤毛和线粒体信号之间。重要的是,我们的发现对于针对纤毛病变的治疗方法的发展具有重要意义.
    Mitochondria-related neurodegenerative diseases have been implicated in the disruption of primary cilia function. Mutation in an intrinsic mitochondrial complex I component NDUFAF2 has been identified in Leigh syndrome, a severe inherited mitochondriopathy. Mutations in ARMC9, which encodes a basal body protein, cause Joubert syndrome, a ciliopathy with defects in the brain, kidney, and eye. Here, we report a mechanistic link between mitochondria metabolism and primary cilia signaling. We discovered that loss of NDUFAF2 caused both mitochondrial and ciliary defects in vitro and in vivo and identified NDUFAF2 as a binding partner for ARMC9. We also found that NDUFAF2 was both necessary and sufficient for cilia formation and that exogenous expression of NDUFAF2 rescued the ciliary and mitochondrial defects observed in cells from patients with known ARMC9 deficiency. NAD+ supplementation restored mitochondrial and ciliary dysfunction in ARMC9-deficient cells and zebrafish and ameliorated the ocular motility and motor deficits of a patient with ARMC9 deficiency. The present results provide a compelling mechanistic link, supported by evidence from human studies, between primary cilia and mitochondrial signaling. Importantly, our findings have significant implications for the development of therapeutic approaches targeting ciliopathies.
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  • 文章类型: Journal Article
    产前酒精暴露(PAE)会导致认知障碍和独特的颅面畸形,部分是由于形成面部骨骼和软骨的多能颅神经c细胞(CNCs)的凋亡损失。我们先前报道了PAE快速抑制>70核糖体蛋白的表达(padj=10-E47)。核糖体异常生物生成引起核仁应激并激活p53-MDM2介导的细胞凋亡。使用原代禽类CNCs和鼠CNC系O9-1,我们测试了核仁应激和p53-MDM2信号是否介导了这种凋亡。我们进一步测试了控制核糖体生物发生的基因中的单倍体是否不足,使用阻断吗啉代的方法,在斑马鱼模型中与酒精协同作用使颅面结果恶化。在禽类和鼠类CNCs中,药理学相关的酒精暴露(20mM,2hr)导致核仁结构的溶解和rRNA合成的丧失;这种核仁应力持续18-24小时。其次是减少扩散,核p53的稳定,以及通过MDM2或显性阴性p53的过表达而阻止的细胞凋亡。在斑马鱼胚胎中,针对核糖体蛋白Rpl5a的低剂量酒精或吗啉代,Rpl11和Rps3a,Tcof同源物Nolc1或mdm2分别引起适度的颅面畸形,而这些阻断吗啉与低剂量酒精协同作用,以减少甚至消除面部元素。使用RNA聚合酶1的小分子抑制剂CX5461获得了类似的结果,而p53阻断吗啉代蛋白在高剂量酒精下标准化了颅面结果。转录组分析证实,酒精抑制了核糖体生物发生所必需的>150个基因的表达。我们得出的结论是酒精引起CNCs的凋亡,至少在某种程度上,通过抑制核糖体生物发生和调用启动p53-MDM2介导的细胞凋亡的核仁应激。我们进一步注意到,代表PAE和一些核糖体病的面部缺陷具有共同的特征,包括减少的hiltrum,上唇,和震中距离,表明PAE的面部缺陷代表,在某种程度上,核糖体病.
    Prenatal alcohol exposure (PAE) causes cognitive impairment and a distinctive craniofacial dysmorphology, due in part to apoptotic losses of the pluripotent cranial neural crest cells (CNCs) that form facial bones and cartilage. We previously reported that PAE rapidly represses expression of >70 ribosomal proteins (padj = 10-E47). Ribosome dysbiogenesis causes nucleolar stress and activates p53-MDM2-mediated apoptosis. Using primary avian CNCs and the murine CNC line O9-1, we tested whether nucleolar stress and p53-MDM2 signaling mediates this apoptosis. We further tested whether haploinsufficiency in genes that govern ribosome biogenesis, using a blocking morpholino approach, synergizes with alcohol to worsen craniofacial outcomes in a zebrafish model. In both avian and murine CNCs, pharmacologically relevant alcohol exposure (20mM, 2hr) causes the dissolution of nucleolar structures and the loss of rRNA synthesis; this nucleolar stress persisted for 18-24hr. This was followed by reduced proliferation, stabilization of nuclear p53, and apoptosis that was prevented by overexpression of MDM2 or dominant-negative p53. In zebrafish embryos, low-dose alcohol or morpholinos directed against ribosomal proteins Rpl5a, Rpl11, and Rps3a, the Tcof homolog Nolc1, or mdm2 separately caused modest craniofacial malformations, whereas these blocking morpholinos synergized with low-dose alcohol to reduce and even eliminate facial elements. Similar results were obtained using a small molecule inhibitor of RNA Polymerase 1, CX5461, whereas p53-blocking morpholinos normalized craniofacial outcomes under high-dose alcohol. Transcriptome analysis affirmed that alcohol suppressed the expression of >150 genes essential for ribosome biogenesis. We conclude that alcohol causes the apoptosis of CNCs, at least in part, by suppressing ribosome biogenesis and invoking a nucleolar stress that initiates their p53-MDM2 mediated apoptosis. We further note that the facial deficits that typify PAE and some ribosomopathies share features including reduced philtrum, upper lip, and epicanthal distance, suggesting the facial deficits of PAE represent, in part, a ribosomopathy.
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  • 文章类型: Journal Article
    在心脏发育过程中,胚胎心室被心外膜包围,它附着在心脏的外顶端表面。这伴随着心室小梁的发作,其中,一部分心肌细胞失去顶端的极性,并从心室壁基底脱层。Llgl1调节根尖细胞连接和根尖囊极性的形成,我们研究了它在心室壁成熟中的作用。我们发现llgl1突变斑马鱼胚胎表现出心室心肌细胞的异常顶端挤压。在研究心尖心肌细胞挤压时,我们发现层粘连蛋白沉积从心室壁内部向心尖转移.我们发现心外膜细胞表达几个层粘连蛋白亚基,层粘连蛋白沉积在心室表面需要心外膜。在llgl1突变体中,由于心外膜细胞的延迟出现,心外膜层的及时建立被破坏,导致层粘连蛋白在心室表面的延迟心尖沉积。一起,我们的分析揭示了Llgl1在心外膜发育的正确时机中的意想不到的作用,支持心室心肌壁的完整性。
    During heart development, the embryonic ventricle becomes enveloped by the epicardium, which adheres to the outer apical surface of the heart. This is concomitant with onset of ventricular trabeculation, where a subset of cardiomyocytes lose apicobasal polarity and delaminate basally from the ventricular wall. Llgl1 regulates the formation of apical cell junctions and apicobasal polarity, and we investigated its role in ventricular wall maturation. We found that llgl1 mutant zebrafish embryos exhibit aberrant apical extrusion of ventricular cardiomyocytes. While investigating apical cardiomyocyte extrusion, we identified a basal-to-apical shift in laminin deposition from the internal to the external ventricular wall. We find that epicardial cells express several laminin subunits as they adhere to the ventricle, and that the epicardium is required for laminin deposition on the ventricular surface. In llgl1 mutants, timely establishment of the epicardial layer is disrupted due to delayed emergence of epicardial cells, resulting in delayed apical deposition of laminin on the ventricular surface. Together, our analyses reveal an unexpected role for Llgl1 in correct timing of epicardial development, supporting integrity of the ventricular myocardial wall.
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  • 文章类型: Journal Article
    kisspeptin1的合成类似物的作用,该肽参与调节下丘脑垂体-性腺(HPG)应力轴,对Daniorerio鱼的皮质醇水平进行了研究。Kisspeptin1以2μg/kg和8μg/kg的剂量给药,然后静息1h和4h。我们发现2μg/kg和8μg/kg的kisspeptin增加皮质醇水平,注射后1小时皮质醇水平显着上升。
    The effect of a synthetic analog of kisspeptin 1, a peptide involved in the regulation of the hypothalamicpituitary- gonadal (HPG) stress axis, on the cortisol level of Danio rerio fish was investigated. Kisspeptin 1 was administered at doses of 2 μg/kg and 8 μg/kg followed by resting for 1 h and 4 h. We found that kisspeptin at doses of 2 μg/kg and 8 μg/kg increased cortisol levels, with a significant spike in cortisol levels at 1 h post-injection.
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  • 文章类型: Journal Article
    神经肽加压素以其调节哺乳动物的渗透平衡而闻名。精氨酸血管生成素(AVT)是存在于鱼中的这种神经肽的非哺乳动物同系物。有限的信息表明,加压素及其同源物也可能影响生殖功能。在本研究中,我们研究了AVT对精子发生的直接影响,使用斑马鱼作为模型生物。结果表明,AVT及其受体(avpr1aa,avpr2aa,avpr1ab,avpr2ab,和avpr2l)在斑马鱼的大脑和睾丸中表达。使用成熟斑马鱼睾丸的离体培养7天,研究了AVT对精子发生的直接作用。使用组织学,形态计量学,和生化方法,我们观察到AVT对斑马鱼睾丸功能的直接作用。AVT治疗以雄激素依赖性方式直接增加精子数量,同时减少有丝分裂细胞和B型精原细胞的增殖活性。观察到的AVT对精子生成的刺激作用被氟他胺阻断,雄激素受体拮抗剂.本结果支持AVT刺激短期雄激素依赖性精子发生的新假设。然而,它的长期存在可能通过减少精原细胞B的增殖而导致精子发生减少,导致精原细胞的营业额减少,精子细胞,和精子.总体发现提供了对脊椎动物中加压素及其同源物作为男性生殖多因素调节因素的生理意义的见解。
    The neuropeptide vasopressin is known for its regulation of osmotic balance in mammals. Arginine vasotocin (AVT) is a non-mammalian homolog of this neuropeptide that is present in fish. Limited information suggested that vasopressin and its homologs may also influence reproductive function. In the present study, we investigated the direct effect of AVT on spermatogenesis, using zebrafish as a model organism. Results demonstrate that AVT and its receptors (avpr1aa, avpr2aa, avpr1ab, avpr2ab, and avpr2l) are expressed in the zebrafish brain and testes. The direct action of AVT on spermatogenesis was investigated using an ex vivo culture of mature zebrafish testes for 7 days. Using histological, morphometric, and biochemical approaches, we observed direct actions of AVT on zebrafish testicular function. AVT treatment directly increased the number of spermatozoa in an androgen-dependent manner, while reducing mitotic cells and the proliferation activity of type B spermatogonia. The observed stimulatory action of AVT on spermiogenesis was blocked by flutamide, an androgen receptor antagonist. The present results support the novel hypothesis that AVT stimulates short-term androgen-dependent spermiogenesis. However, its prolonged presence may lead to diminished spermatogenesis by reducing the proliferation of spermatogonia B, resulting in a diminished turnover of spermatogonia, spermatids, and spermatozoa. The overall findings offer an insight into the physiological significance of vasopressin and its homologs in vertebrates as a contributing factor in the multifactorial regulation of male reproduction.
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  • 文章类型: Journal Article
    过氧化氢被认为是导致细胞损伤完整性和功能的有害分子。其在氧化应激中的关键氧化还原信号分子,并对广泛的生物体产生毒性。因此,为了了解氧化应激是否会改变视觉发育,将斑马鱼胚胎暴露于浓度为0.02至62.5mM的H2O2中7天。48hpf时视网膜的眼长比(EBR)和细胞凋亡,和在7dpf时的视运动反应(OMR)都被测量。为了研究过氧化氢诱导的作用是否由氧化应激介导,胚胎与抗氧化剂共同孵育,谷胱甘肽(GSH)为50μM。结果表明,浓度为0.1mM或以上的H2O2诱导发育毒性,导致死亡率增加和孵化延迟。此外,暴露于0.1mMH2O2可在48hpf时降低EBR,在7dpf时损害OMR视觉行为。此外,暴露在48hpf时增加了视网膜中凋亡细胞的面积。GSH的添加逆转了H2O2的作用,表明参与了氧化应激。H2O2降低了眼部发育相关基因的表达,pax6α和pax6β。凋亡相关基因的表达,tp53,casp3和bax,显著增加,而bcl2α表达降低。抗氧化相关基因sod1、cat和gpx1a表达降低。雌激素受体(ERs)的表达水平(esr1,esr2α,和esr2β)以及卵巢和脑芳香化酶基因(cyp19a1a和cyp19a1b,分别)也显著减少。有趣的是,GSH有效性的共孵育逆转了H2O2对大多数参数的影响。总的来说,这些结果表明,H2O2通过氧化应激对视觉发育产生不利影响,导致细胞凋亡改变,减少抗氧化剂防御和减少雌激素的产生。
    Hydrogen peroxide is considered deleterious molecule that cause cellular damage integrity and function. Its key redox signaling molecule in oxidative stress and exerts toxicity on a wide range of organisms. Thus, to understand whether oxidative stress alters visual development, zebrafish embryos were exposed to H2O2 at concentration of 0.02 to 62.5 mM for 7 days. Eye to body length ratio (EBR) and apoptosis in retina at 48 hpf, and optomotor response (OMR) at 7 dpf were all measured. To investigate whether hydrogen peroxide-induced effects were mediated by oxidative stress, embryos were co-incubated with the antioxidant, glutathione (GSH) at 50 μM. Results revealed that concentrations of H2O2 at or above 0.1 mM induced developmental toxicity, leading to increased mortality and hatching delay. Furthermore, exposure to 0.1 mM H2O2 decreased EBR at 48 hpf and impaired OMR visual behavior at 7 dpf. Additionally, exposure increased the area of apoptotic cells in the retina at 48 hpf. The addition of GSH reversed the effects of H2O2, suggesting the involvement of oxidative stress. H2O2 decreased the expression of eye development-related genes, pax6α and pax6β. The expression of apoptosis-related genes, tp53, casp3 and bax, significantly increased, while bcl2α expression decreased. Antioxidant-related genes sod1, cat and gpx1a showed decreased expression. Expression levels of estrogen receptors (ERs) (esr1, esr2α, and esr2β) and ovarian and brain aromatase genes (cyp19a1a and cyp19a1b, respectively) were also significantly reduced. Interestingly, co-incubation of GSH effectivity reversed the impact of H2O2 on most parameters. Overall, these results demonstrate that H2O2 induces adverse effects on visual development via oxidative stress, which leads to alter apoptosis, diminished antioxidant defenses and reduced estrogen production.
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  • 文章类型: Journal Article
    背景:ALS/FTLD的关键病理特征是内源性TDP-43从细胞核到细胞质的错误定位。然而,TDP-43在细胞质中的功能获得仍然知之甚少,因为缺少再现内源性TDP-43从细胞核到细胞质的错误定位的TDP-43动物模型。
    方法:CRISPR/Cas9技术用于产生斑马鱼品系(称为CytoTDP),错误地将内源性TDP-43从细胞核定位到细胞质。通过免疫染色进行运动神经元和神经肌肉接头的表型表征,通过整体组织清除对小胶质细胞进行免疫组织化学定位,并通过扫描电子显微镜分析肌肉超微结构。通过视频跟踪和游泳参数的定量分析来研究行为。RNA测序用于鉴定通过分子分析验证的错误调节的途径。
    结果:CytoTDP鱼具有早期幼体表型,类似于ALS的临床特征,例如进行性运动缺陷,神经变性和肌肉萎缩。利用斑马鱼的胚胎发育,只依赖于卵黄的使用,直到受精后5天,我们证明了下丘脑小胶质细胞的增殖和激活与食物摄入无关。通过将CytoTDP与先前生成的TDP-43敲除系进行比较,转录组学分析显示,内源性TDP-43的错误定位,而不是TDP-43核功能丧失,导致早发代谢功能障碍。
    结论:新的TDP-43模型模拟进行性运动功能障碍的ALS/FTLD标志。我们的结果表明,下丘脑的功能缺陷,代谢调节中心,可能是ALS患者体重减轻的主要原因。内源性TDP-43的细胞质功能获得导致体内代谢功能障碍,这让人想起早期ALS临床非运动代谢改变。因此,CytoTDP斑马鱼模型提供了一个独特的机会,可以识别疾病进展早期治疗干预的失调靶点.
    BACKGROUND: The key pathological signature of ALS/ FTLD is the mis-localization of endogenous TDP-43 from the nucleus to the cytoplasm. However, TDP-43 gain of function in the cytoplasm is still poorly understood since TDP-43 animal models recapitulating mis-localization of endogenous TDP-43 from the nucleus to the cytoplasm are missing.
    METHODS: CRISPR/Cas9 technology was used to generate a zebrafish line (called CytoTDP), that mis-locates endogenous TDP-43 from the nucleus to the cytoplasm. Phenotypic characterization of motor neurons and the neuromuscular junction was performed by immunostaining, microglia were immunohistochemically localized by whole-mount tissue clearing and muscle ultrastructure was analyzed by scanning electron microscopy. Behavior was investigated by video tracking and quantitative analysis of swimming parameters. RNA sequencing was used to identify mis-regulated pathways with validation by molecular analysis.
    RESULTS: CytoTDP fish have early larval phenotypes resembling clinical features of ALS such as progressive motor defects, neurodegeneration and muscle atrophy. Taking advantage of zebrafish\'s embryonic development that solely relys on yolk usage until 5 days post fertilization, we demonstrated that microglia proliferation and activation in the hypothalamus is independent from food intake. By comparing CytoTDP to a previously generated TDP-43 knockout line, transcriptomic analyses revealed that mis-localization of endogenous TDP-43, rather than TDP-43 nuclear loss of function, leads to early onset metabolic dysfunction.
    CONCLUSIONS: The new TDP-43 model mimics the ALS/FTLD hallmark of progressive motor dysfunction. Our results suggest that functional deficits of the hypothalamus, the metabolic regulatory center, might be the primary cause of weight loss in ALS patients. Cytoplasmic gain of function of endogenous TDP-43 leads to metabolic dysfunction in vivo that are reminiscent of early ALS clinical non-motor metabolic alterations. Thus, the CytoTDP zebrafish model offers a unique opportunity to identify mis-regulated targets for therapeutic intervention early in disease progression.
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  • 文章类型: Journal Article
    生殖成功取决于适当建立和维持生物性别。在许多动物中,包括哺乳动物,初级性腺最初是卵巢偏向的。我们之前展示了RNA结合蛋白(RNAbp),Rbpms2是斑马鱼卵巢命运所必需的。这里,我们鉴定了卵母细胞中的Rbpms2靶标(Rbpms2结合的卵母细胞RNA;rboRNA)。我们将Rbpms2鉴定为rboRNAs的翻译调节因子,其中包括睾丸因子和核糖体生物发生因子。Further,遗传分析表明,Rbpms2通过mTorc1信号通路促进核仁扩增,特别是通过mTorc1激活针对Rags2(Gator2)组件的间隙活动,缺少卵母细胞(Mios)。累计,我们的研究结果表明,早期性腺细胞处于双重状态,双电势状态,其中Rbpms2充当二进制命运切换。具体来说,Rbpms2抑制睾丸因子并促进卵母细胞因子通过必需的Gator2介导的检查点促进卵母细胞进展,从而在斑马鱼卵子发生中整合性别分化因子和营养利用途径的调节。
    Reproductive success relies on proper establishment and maintenance of biological sex. In many animals, including mammals, the primary gonad is initially ovary biased. We previously showed the RNA binding protein (RNAbp), Rbpms2, is required for ovary fate in zebrafish. Here, we identified Rbpms2 targets in oocytes (Rbpms2-bound oocyte RNAs; rboRNAs). We identify Rbpms2 as a translational regulator of rboRNAs, which include testis factors and ribosome biogenesis factors. Further, genetic analyses indicate that Rbpms2 promotes nucleolar amplification via the mTorc1 signaling pathway, specifically through the mTorc1-activating Gap activity towards Rags 2 (Gator2) component, Missing oocyte (Mios). Cumulatively, our findings indicate that early gonocytes are in a dual poised, bipotential state in which Rbpms2 acts as a binary fate-switch. Specifically, Rbpms2 represses testis factors and promotes oocyte factors to promote oocyte progression through an essential Gator2-mediated checkpoint, thereby integrating regulation of sexual differentiation factors and nutritional availability pathways in zebrafish oogenesis.
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