背景:瓦登堡综合征(Waardenburgsyndrome,WS)是一种罕见的遗传性疾病,主要表现为听力损失和色素异常。目前,已经确定了WS的七个致病基因,但临床基因检测结果显示,38.9%的WS患者仍有分子原因不明。在这项研究中,我们通过蛋白质-蛋白质相互作用和表型相似性进行了多数据整合分析,以全面破译未确诊WS的潜在致病因素.此外,我们从已发表的文献中手动收集了443例病例,探讨了WS中基因型和表型之间的关联.
结果:我们预测了两个可能的WS致病基因(KIT,CHD7)通过多数据集成分析,这进一步得到了单细胞基因表达谱和基因敲除小鼠表型的支持。我们还预测了二十,七、和五个潜在的WS致病变异基因PAX3,MITF,和SOX10。基因型-表型关联分析显示,PAX3变异患者中主要存在白色的前锁和远齿;在MITF变异患者中更常见到皮肤雀斑和头发过早变白;而在SOX10变异患者中,神经节巨结肠和便秘更常见。PAX3和MITF变异的患者更容易出现滑膜和宽鼻根。虹膜色素异常在PAX3和SOX10变异的患者中更为常见。此外,我们发现SOX10变异体患者患听觉系统疾病和神经系统疾病的风险更高,这与SOX10在耳组织和脑组织中的高表达丰度密切相关。
结论:我们的研究为WS的潜在致病因素提供了新的见解,并提供了一种探索临床未诊断病例的替代方法。这将促进临床诊断和遗传咨询。然而,两个潜在的致病基因(KIT,本研究中通过多数据整合预测的CHD7)和32种潜在致病变种(PAX3:20,MITF:7,SOX10:5)均为计算预测,需要在后续研究中通过实验进一步验证。
BACKGROUND: Waardenburg syndrome (WS) is a rare genetic disorder mainly characterized by hearing loss and pigmentary abnormalities. Currently, seven causative genes have been identified for WS, but clinical genetic testing results show that 38.9% of WS patients remain molecularly unexplained. In this study, we performed multi-data integration analysis through protein-protein interaction and phenotype-similarity to comprehensively decipher the potential causative factors of undiagnosed WS. In addition, we explored the association between genotypes and phenotypes in WS with the manually collected 443 cases from published literature.
RESULTS: We predicted two possible WS pathogenic genes (KIT, CHD7) through multi-data integration analysis, which were further supported by gene expression profiles in single cells and phenotypes in gene knockout mouse. We also predicted twenty, seven, and five potential WS pathogenic variations in gene PAX3, MITF, and SOX10, respectively. Genotype-phenotype association analysis showed that white forelock and telecanthus were dominantly present in patients with PAX3 variants; skin freckles and premature graying of hair were more frequently observed in cases with MITF variants; while aganglionic megacolon and constipation occurred more often in those with SOX10 variants. Patients with variations of PAX3 and MITF were more likely to have synophrys and broad nasal root. Iris pigmentary abnormality was more common in patients with variations of PAX3 and SOX10. Moreover, we found that patients with variants of SOX10 had a higher risk of suffering from auditory system diseases and nervous system diseases, which were closely associated with the high expression abundance of SOX10 in ear tissues and brain tissues.
CONCLUSIONS: Our study provides new insights into the potential causative factors of WS and an alternative way to explore clinically undiagnosed cases, which will promote clinical diagnosis and genetic counseling. However, the two potential disease-causing genes (KIT, CHD7) and 32 potential pathogenic variants (PAX3: 20, MITF: 7, SOX10: 5) predicted by multi-data integration in this study are all computational predictions and need to be further verified through experiments in follow-up research.