Viral resistance

病毒抗性
  • 文章类型: Journal Article
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  • 文章类型: Journal Article
    在撒哈拉以南非洲获得HepatisC治疗是一种临床,公共卫生和伦理关注。多国开放标签试验TACANRS12311允许评估可行性,安全,在撒哈拉以南非洲丙型肝炎患者中,HCV治疗和再治疗的特定护理模式的有效性。在2015年11月至2017年3月之间,随访至2019年中期,招募了没有失代偿性肝硬化或肝癌的HCV初治患者,接受索非布韦+利巴韦林(HCV基因型2)或索非布韦+ledipasvir(基因型1或4)的12周治疗,并在病毒学衰竭的情况下使用sofosbuvirvelpatasvir+ilapxapre主要结果是治疗结束后12周的持续病毒学应答(SVR12)。次要结果包括治疗依从性,安全性和SVR12在因一线治疗无反应而复治的患者中.护理模式依赖于病毒载量评估和教育会议,以提高患者的意识,坚持和健康素养。这项研究招募了120名参与者,36艾滋病毒共同感染,和14例肝硬化。只有一名患者因返回祖国而停止治疗。未发生死亡或严重不良事件。107例患者(89%)达到SVR12:基因型1或2(90%),GT-4为88%。所有重新治疗的患者(n=13)达到SVR12。HCV治疗是高度可接受的,在这种护理模式下安全有效。现在需要进行实施研究,以扩大现场护理HCV检测和SVR评估,随着社区参与患者教育,在撒哈拉以南非洲实现HCV消除。
    Access to Hepatis C treatment in Sub-Saharan Africa is a clinical, public health and ethical concern. The multi-country open-label trial TAC ANRS 12311 allowed assessing the feasibility, safety, efficacy of a specific care model of HCV treatment and retreatment in patients with hepatitis C in Sub Saharan Africa. Between November 2015 and March 2017, with follow-up until mid 2019, treatment-naïve patients with HCV without decompensated cirrhosis or liver cancer were recruited to receive 12 week-treatment with either sofosbuvir + ribavirin (HCV genotype 2) or sofosbuvir + ledipasvir (genotype 1 or 4) and retreatment with sofosbuvir + velpatasvir + voxilaprevir in case of virological failure. The primary outcome was sustained virological response at 12 weeks after end of treatment (SVR12). Secondary outcomes included treatment adherence, safety and SVR12 in patients who were retreated due to non-response to first-line treatment. The model of care relied on both viral load assessment and educational sessions to increase patient awareness, adherence and health literacy. The study recruited 120 participants, 36 HIV-co-infected, and 14 cirrhotic. Only one patient discontinued treatment because of return to home country. Neither death nor severe adverse event occurred. SVR12 was reached in 107 patients (89%): (90%) in genotype 1 or 2, and 88% in GT-4. All retreated patients (n = 13) reached SVR12. HCV treatment is highly acceptable, safe and effective under this model of care. Implementation research is now needed to scale up point-of-care HCV testing and SVR assessment, along with community involvement in patient education, to achieve HCV elimination in Sub-Saharan Africa.
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  • 文章类型: Journal Article
    目的:COVID-19大流行仍然是全球人口的重大公共卫生问题;治疗方法的开发和表征,尤其是那些广泛有效的,随着严重急性呼吸道综合症-冠状病毒-2(SARS-CoV-2)变种的出现,将继续至关重要。中和单克隆抗体仍然是预防病毒感染和传播的有效治疗策略,只要它们识别循环变体并与之相互作用。针对许多关注的SARS-CoV-2变体的中和抗SARS-CoV-2刺突受体结合域抗体克隆的表位和结合特异性通过产生抗抗体的病毒体以及冷冻-EM结构分析和VSV-刺突中和研究来表征。该工作流程可用于预测抗体治疗剂针对新兴变体的功效,并为治疗剂和疫苗的设计提供信息。
    OBJECTIVE: The COVID-19 pandemic remains a significant public health concern for the global population; the development and characterization of therapeutics, especially ones that are broadly effective, will continue to be essential as severe acute respiratory syndrome-coronavirus-2 (SARS-CoV-2) variants emerge. Neutralizing monoclonal antibodies remain an effective therapeutic strategy to prevent virus infection and spread so long as they recognize and interact with circulating variants. The epitope and binding specificity of a neutralizing anti-SARS-CoV-2 Spike receptor-binding domain antibody clone against many SARS-CoV-2 variants of concern were characterized by generating antibody-resistant virions coupled with cryo-EM structural analysis and VSV-spike neutralization studies. This workflow can serve to predict the efficacy of antibody therapeutics against emerging variants and inform the design of therapeutics and vaccines.
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  • 文章类型: Clinical Trial
    背景:我们报道了在PROVENT暴露前预防试验(NCT04625725)中从突破性感染中鉴定的SARS-CoV-2变体的基于刺突蛋白的谱系和AZD7442(tixagevimab/cilgavimab)中和活性。
    方法:对从逆转录聚合酶链反应阳性症状疾病的PROVENT参与者中鉴定出的变异体进行表型评估,以确定变异体特异性假型病毒样颗粒的中和易感性。
    结果:完成6个月的随访后,在突破性COVID-19病例中未观察到AZD7442耐药变体。SARS-CoV-2中和抗体滴度在突破和非突破病例中相似。
    结论:PROVENT中有症状的COVID-19突破病例不是由于AZD7442结合位点的耐药性相关取代或缺乏AZD7442暴露所致。
    We report spike protein-based lineage and AZD7442 (tixagevimab/cilgavimab) neutralizing activity of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants identified from breakthrough infections in the PROVENT preexposure prophylaxis trial.
    Variants identified from PROVENT participants with reverse-transcription polymerase chain reaction-positive symptomatic illness were phenotypically assessed to determine neutralization susceptibility of variant-specific pseudotyped virus-like particles.
    At completion of 6 months\' follow-up, no AZD7442-resistant variants were observed in breakthrough coronavirus disease 2019 (COVID-19) cases. SARS-CoV-2 neutralizing antibody titers were similar in breakthrough and nonbreakthrough cases.
    Symptomatic COVID-19 breakthrough cases in PROVENT were not due to resistance-associated substitutions in AZD7442 binding sites or lack of AZD7442 exposure.
    NCT04625725.
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  • 文章类型: Journal Article
    马铃薯(SolanumtuberosumL.)是一种重要的蔬菜作物,特别是考虑到它有潜力养活世界人口,并在许多发展中国家充当主要主食。每年,由于缺乏有效的农业化学处理,病毒病导致了重大的作物损失,因为只有昆虫媒介的传播可以通过使用杀虫剂来防止,这是阻碍马铃薯生产的重要因素。随着分子生物学和植物基因工程技术的迅速发展,转基因方法和非转基因技术(RNA干扰和CRISPR-cas9)已被有效地用于提高马铃薯对破坏性病毒的保护。此外,病毒序列的可用性,马铃薯基因组序列,和宿主免疫机制显著促进了马铃薯基因工程。在这项研究中,我们总结了通过工程化病毒源或植物源基因在马铃薯中应用的抗病毒策略的进展。这些最近对工程方法的分子见解提供了在马铃薯中开发病毒抗性的必要框架,以提供针对茄科作物的重要病毒性疾病的持久和广谱保护。
    Potato (Solanum tuberosum L.) is an important vegetable crop that plays a pivotal role in the world, especially given its potential to feed the world population and to act as the major staple food in many developing countries. Every year, significant crop loss is caused by viral diseases due to a lack of effective agrochemical treatments, since only transmission by insect vectors can be combated with the use of insecticides, and this has been an important factor hindering potato production. With the rapid development of molecular biology and plant genetic engineering technology, transgenic approaches and non-transgenic techniques (RNA interference and CRISPR-cas9) have been effectively employed to improve potato protection against devastating viruses. Moreover, the availability of viral sequences, potato genome sequences, and host immune mechanisms has remarkably facilitated potato genetic engineering. In this study, we summarize the progress of antiviral strategies applied in potato through engineering either virus-derived or plant-derived genes. These recent molecular insights into engineering approaches provide the necessary framework to develop viral resistance in potato in order to provide durable and broad-spectrum protection against important viral diseases of solanaceous crops.
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  • 文章类型: Journal Article
    UASSIGNED:从二线到三线抗逆转录病毒疗法(TLART)的快速转换对于实现病毒抑制和减少与ART失败相关的疾病至关重要。
    UNASSIGNED:这项回顾性队列研究对检测到二线治疗的病毒学失败后开始TLART的等待期进行了量化,评估与延迟相关的因素,并评估开始接受TLART治疗的患者的结局.
    未经评估:数据是从符合TLART条件的个人记录中提取的,并计算TLART起始时间。延误的原因根据患者进行分类,临床医生和行政流程。
    未经授权:54例患者符合TLART的条件。从二线治疗的首次病毒载量>1000拷贝/mL到TLART开始的中位延迟为640天(四分位距[IQR]:451-983天)。在二线失败并申请TLART的患者中,41(75.6%)最终在TLART上启动,11人(20.4%)在等待时死亡。延迟主要是由于对第一次未抑制的病毒载量无反应,而在二线ART:467天(IQR:232-803天)。
    UNASSIGNED:这项研究表明,TLART启动的等待时间很长,主要是在检测到高病毒载量到要求进行抗性测试之间;许多因素可能有贡献,包括临床医生对病毒载量升高的延迟反应。在开始TLART之前,死亡率很高。TLART启动的过程需要更有效。应加强医疗保健服务,以(1)及早识别和管理病毒学失败,并确定有资格进行耐药性测试的人,(2)确保获得耐药性测试和适当熟练的临床医生,(3)简化TLART的批准和交付。
    UNASSIGNED: Rapid switching from second-line to third-line antiretroviral therapy (TLART) is crucial for achieving viral suppression and reducing illness related to ART failure.
    UNASSIGNED: This retrospective cohort study quantified the waiting periods for TLART initiation after virological failure on second-line therapy was detected, assessed factors associated with delays and assessed the outcomes of patients started on TLART.
    UNASSIGNED: Data were abstracted from records of individuals eligible for TLART, and the time to TLART initiation was calculated. Reasons for delays were categorised according to patient, clinician and administrative processes.
    UNASSIGNED: Fifty-four patients were eligible for TLART. The median delay from the date of first viral load > 1000 copies/mL on second-line therapy to the start of TLART was 640 days (interquartile range [IQR]: 451-983 days). Of the patients that failed second-line and had an application for TLART, 41 (75.6%) were eventually initiated on TLART, and 11 (20.4%) died while waiting. Delays were primarily due to non-response to the first unsuppressed viral load while on second-line ART: 467 days (IQR: 232-803 days).
    UNASSIGNED: This study showed a prolonged waiting period for TLART initiation mainly between detected high viral load to requesting of resistance tests; many factors could have contributed, including clinicians\' delayed responses to elevated viral loads. Mortality was high before TLART could be initiated. The process of TLART initiation needs to be made more efficient. Healthcare services should be strengthened to (1) recognise and manage virological failure early and identify those eligible for resistance testing, (2) ensure access to resistance testing and appropriately skilled clinicians, and (3) streamline approvals and delivery of TLART.
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  • 文章类型: Journal Article
    自然抗感染是丙型肝炎病毒(HCV)暴露后被忽视的结果。在1977年至1979年之间,有1,200名恒河猴D阴性爱尔兰妇女暴露于HCV污染的抗D免疫球蛋白。这里,我们调查了为什么有些人尽管暴露(暴露的血清阴性[ESN])似乎仍抵抗感染。我们使用ELISpots和VirScan筛选抗HCV适应性免疫反应的抗HCV抗性和易感供体,以分析针对所有已知人类病毒的抗体。我们使用抗病毒配体进行标准化的离体全血刺激(TruCulture)测定,并使用NanoString转录组学和Luminex蛋白质组学评估抗病毒反应。我们描述了与血清阳性女性相比,ESN中TLR3-I型干扰素反应增强。我们还确定了与血清阳性女性相比,ESNs中响应polyIC的炎性细胞因子产生增加。这些增强的反应可能有助于我们队列中针对HCV感染的先天免疫保护。
    Natural resistance to infection is an overlooked outcome after hepatitis C virus (HCV) exposure. Between 1977 and 1979, 1,200 Rhesus D-negative Irish women were exposed to HCV-contaminated anti-D immunoglobulin. Here, we investigate why some individuals appear to resist infection despite exposure (exposed seronegative [ESN]). We screen HCV-resistant and -susceptible donors for anti-HCV adaptive immune responses using ELISpots and VirScan to profile antibodies against all know human viruses. We perform standardized ex vivo whole blood stimulation (TruCulture) assays with antiviral ligands and assess antiviral responses using NanoString transcriptomics and Luminex proteomics. We describe an enhanced TLR3-type I interferon response in ESNs compared with seropositive women. We also identify increased inflammatory cytokine production in response to polyIC in ESNs compared with seropositive women. These enhanced responses may have contributed to innate immune protection against HCV infection in our cohort.
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  • 文章类型: Journal Article
    Despite their incredible contribution to fighting viral infections, antiviral viral resistance is an increasing concern and often arises due to unfavorable physicochemical and biopharmaceutical properties. To address this kind of issue, lipid nanocapsules (LNC) are developed in this study, using efavirenz (EFV) as a drug model. EFV solubility was assessed in water, Labrafac Lipophile and medium chain triglycerides oil (MCT oil). EFV turned out to be more soluble in the two latter dissolving media (solubility > 250 mg/mL); hence, given its affordability, MCT oil was used for LNC formulation. LNC were prepared using a low-energy method named phase inversion, and following a design of experiments process. This one resulted in polynomial models that predicted LNC particle size, polydispersity index and zeta potential that were, respectively, around 50 nm, below 0.2 and below −33 mV, for the optimized formulations. Once synthesized, we were able to achieve an encapsulation efficacy of 87%. On the other hand, high EFV release from the LNC carrier was obtained in neutral medium as compared to acid milieu (pH 4) with, respectively, 42 and 27% EFV release within 74 h. Other characterization techniques were applied and further supported the successful encapsulation of EFV in LNCs in an amorphous form. Stability studies revealed that the developed LNC were quite stable over the period of 28 days. Ultimately, LNCs have been demonstrated to improve the biopharmaceutical properties of EFV and could therefore be used to fight against antiviral resistance.
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  • 文章类型: Journal Article
    小麦条纹花叶病毒(WSMV)是威胁全球小麦生产的重要经济病毒病原体,尤其是在美国的大平原地区。Wsm2基因座赋予对WSMV的抗性,并已广泛用于适应该地区的普通小麦品种。表征潜在的致病遗传变异将有助于我们对小麦中病毒抗性机制的理解,并有助于开发完美的育种标记。在这项研究中,双单倍体(DH)作图种群中的连锁作图证实Wsm2是赋予小麦WSMV抗性的主要基因座。将Wsm2侧翼标记定位到包含142个候选基因的3BS染色体远端的4.0Mbp区域。从不同农业生态区收集的17种小麦基因型中鉴定出8种单倍型,表明Wsm2位于基因组的动态区域,具有广泛的结构变异,并且在普通小麦品种的大多数可用基因组装配体中,它可能是罕见的等位基因。品种“Snowmass”的外显子组测序,携带Wsm2的基因在Wsm2间隔内的142个候选基因中发现了几个功能缺失突变和拷贝数变异。与“Antero”相比,这些基因中的六个在“Snowmass”中差异表达,“缺乏Wsm2的品种,包括编码与RPM1同源的核苷酸结合位点富含亮氨酸重复序列(NBS-LRR)型蛋白的基因。未映射的RNA-seq读段的从头组装确定了仅在“Snowmass”中表达的9个转录本,“其中三个也是响应WSMV接种而诱导的。这项研究揭示了Wsm2背后的变异,并提供了一系列候选基因供后续验证。
    Wheat streak mosaic virus (WSMV) is an economically important viral pathogen that threatens global wheat production, particularly in the Great Plains of the United States. The Wsm2 locus confers resistance to WSMV and has been widely deployed in common wheat varieties adapted to this region. Characterizing the underlying causative genetic variant would contribute to our understanding of viral resistance mechanisms in wheat and aid the development of perfect markers for breeding. In this study, linkage mapping in a doubled-haploid (DH) mapping population confirmed Wsm2 as a major locus conferring WSMV resistance in wheat. The Wsm2 flanking markers were mapped to a 4.0 Mbp region at the distal end of chromosome 3BS containing 142 candidate genes. Eight haplotypes were identified from seventeen wheat genotypes collected from different agroecological zones, indicating that Wsm2 lies in a dynamic region of the genome with extensive structural variation and that it is likely a rare allele in most available genome assemblies of common wheat varieties. Exome sequencing of the variety \"Snowmass\", which carries Wsm2, revealed several loss-of-function mutations and copy number variants in the 142 candidate genes within the Wsm2 interval. Six of these genes are differentially expressed in \"Snowmass\" compared to \"Antero,\" a variety lacking Wsm2, including a gene that encodes a nucleotide-binding site leucine-rich repeat (NBS-LRR) type protein with homology to RPM1. A de novo assembly of unmapped RNA-seq reads identified nine transcripts expressed only in \"Snowmass,\" three of which are also induced in response to WSMV inoculation. This study sheds light on the variation underlying Wsm2 and provides a list of candidate genes for subsequent validation.
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  • 文章类型: Journal Article
    尽管丙型肝炎病毒(HCV)感染的治疗取得了实质性进展,一些患者仍然存在病毒耐药性和复发,如果病毒耐药性变得更加普遍,最终可能需要额外的治疗方法.微管在几个HCV生命周期事件中发挥重要作用,包括细胞附着,条目,细胞运输,形态发生和后代分泌步骤。因此,据推测,微管抑制可能是治疗HCV感染的新方法.这里,在HCV复制子荧光素酶报告系统和感染系统中研究了我们最近开发的微管抑制剂的抑制作用。此外,微管抑制剂与daclatasvir的联合反应,这是一种临床上使用的HCVNS5A抑制剂,也进行了评估。我们的结果表明,微管靶向具有抗HCV复制的活性,并与目前的临床药物显示出协同作用。
    Even though substantial progress has been made in the treatment of hepatitis C virus (HCV) infection, viral resistance and relapse still occur in some patients and additional therapeutic approaches may ultimately be needed should viral resistance become more prevalent. Microtubules play important roles in several HCV life cycle events, including cell attachment, entry, cellular transportation, morphogenesis and progeny secretion steps. Therefore, it was hypothesized that microtubular inhibition might be a novel approach for the treatment of HCV infection. Here, the inhibitory effects of our recently developed microtubule inhibitors were studied in the HCV replicon luciferase reporter system and the infectious system. In addition, the combination responses of microtubule inhibitors with daclatasvir, which is a clinically used HCV NS5A inhibitor, were also evaluated. Our results indicated that microtubule targeting had activity against HCV replication and showed synergistic effect with a current clinical drug.
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