背景:在全球范围内,Sapovirus(SaV)感染正在增加。同时,在浙江省的儿童中观察到了几次SaV爆发,中国,近年来,在这项研究中,分析了浙江省7起暴发疫情的沙泊病毒基因型。
方法:在2021年10月至2023年2月期间,从浙江省疾病预防控制中心收集4至17岁儿童的粪便样本共105份。使用逆转录聚合酶链反应和Sanger测序处理基因型,而下一代测序用于产生完整的病毒基因组。分析推导的氨基酸序列以检测VP1基因突变。
结果:总计,检测到60例SaV阳性患者的阳性率为57.14%(60/105)。7起疫情的阳性率分别为:22.22%(2/9),15.00%(3/20),93.10%(27/29),84.21%(16/19),28.57%(2/7),53.33%(8/15)和33.33%(2/6),分别。在7次疫情中发现了4种基因型,其中,GI.1占14.29%(1/7),GI.2占14.29%(1/7),GI.6和GII.5占14.29%(1/7),GI.6占57.14%(4/7)。所有患者均为儿童,暴发主要发生在小学和寒冷季节。此外,来自GI.6爆发菌株的完整序列显示出高度同源性(同一性:99.99%),几乎没有常见的取代(Y300S,N302S和L8M)中的VP1卵白。
结论:在7次暴发中观察到SaV基因型多样性,浙江省SaV基因型以GI.6为主。具有较高的同源性,可能为SaV防治措施提供平台。
Sapovirus (SaV) infection is increasing globally. Concurrently, several SaV-outbreaks were observed in children of Zhejiang province, China, in recent years, In this study, the genotypes of Sapovirus from seven outbreaks in the Zhejiang province were analysed.
A total of 105 faecal samples were collected from children aged between 4 and 17 years from the Zhejiang Provincial Center for Disease Control and Prevention between October 2021 and February 2023. Genotypes were processed using reverse transcription polymerase chain reaction and Sanger sequencing, while next-generation sequencing was used to generate a complete viral genome. Deduced amino acid sequences were analysed to detect VP1 gene mutations.
In total, 60 SaV-positive patients were detected at a 57.14% (60/105) positivity rate. Positive rates in the seven outbreaks were: 22.22% (2/9), 15.00% (3/20), 93.10% (27/29), 84.21% (16/19), 28.57% (2/7), 53.33% (8/15) and 33.33% (2/6), respectively. Four genotypes were identified in the seven outbreaks, of which, GI.1 accounted for 14.29% (1/7), GI.2 accounted for 14.29% (1/7), GI.6 and GII.5 accounted for 14.29% (1/7), and GI.6 accounted for 57.14% (4/7). All patients were children and outbreaks predominantly occurred in primary schools and during cold seasons. Additionally, the complete sequence from the GI.6 outbreak strain showed high homology (identity: 99.99%) with few common substitutions (Y300S, N302S and L8M) in VP1 protein.
SaV genotype diversity was observed in the seven outbreaks, with GI.6 being the main SaV genotype in Zhejiang province. It demonstrated high homology and may provide a platform for SaV prevention and control measures.