TMB, tumor mutational burden

  • 文章类型: Journal Article
    欧盟体外诊断设备法规(IVDR)旨在对诊断设备进行基于风险和目的的透明验证。将结果可追溯到唯一标识的设备,和上市后的监督。IVDR规范设计,设备的制造和投入使用,但不是使用这些设备的医疗服务。在没有合适的商业设备的情况下,实验室可以诉诸实验室开发的测试(LDT)进行内部使用。纪录片义务(IVDR艺术5.5),附件一的性能和安全规范,并在ISO15189等效质量体系下进行开发和制造。LDT服务于特定的临床需求,通常用于低容量利基应用,或者对应于新测试和治疗的转化阶段,通常与患者护理密切相关。由于一些商业测试可能会随着IVDR的推出而消失,许多将需要紧急更换LDT。工作量还将取决于对商业测试的哪些修改将其转变为LDT,以及国家立法者和主管当局(CA)将如何处理新的权限和责任。我们讨论了对ISO15189的适当解释,以涵盖IVDR要求。选定的案例说明了涵盖医疗需求的LDT实施,并对预期使用和/或设备设计产生的风险进行了相应的管理。IVDR的意外附带损害包括无利可图的利基应用的损失,成本增加和资源浪费,以及将创新研究迁移到更具成本效益的环境。考虑到当地的具体情况,立法框架应减少医疗保健系统的负担和相关的机会成本,通过勤勉利用现有的框架。
    The EU In-Vitro Diagnostic Device Regulation (IVDR) aims for transparent risk-and purpose-based validation of diagnostic devices, traceability of results to uniquely identified devices, and post-market surveillance. The IVDR regulates design, manufacture and putting into use of devices, but not medical services using these devices. In the absence of suitable commercial devices, the laboratory can resort to laboratory-developed tests (LDT) for in-house use. Documentary obligations (IVDR Art 5.5), the performance and safety specifications of ANNEX I, and development and manufacture under an ISO 15189-equivalent quality system apply. LDTs serve specific clinical needs, often for low volume niche applications, or correspond to the translational phase of new tests and treatments, often extremely relevant for patient care. As some commercial tests may disappear with the IVDR roll-out, many will require urgent LDT replacement. The workload will also depend on which modifications to commercial tests turns them into an LDT, and on how national legislators and competent authorities (CA) will handle new competences and responsibilities. We discuss appropriate interpretation of ISO 15189 to cover IVDR requirements. Selected cases illustrate LDT implementation covering medical needs with commensurate management of risk emanating from intended use and/or design of devices. Unintended collateral damage of the IVDR comprises loss of non-profitable niche applications, increases of costs and wasted resources, and migration of innovative research to more cost-efficient environments. Taking into account local specifics, the legislative framework should reduce the burden on and associated opportunity costs for the health care system, by making diligent use of existing frameworks.
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  • 文章类型: Journal Article
    免疫检查点抑制剂(ICIs)是一类主要的免疫肿瘤学疗法,可以显着改善各种癌症的预后。在(新)佐剂和转移设置。与其他常规疗法不同,ICI通过增强宿主免疫系统以消除癌细胞来引发抗肿瘤作用。美国食品药品监督管理局批准了3种ICI类别:靶向细胞毒性T淋巴细胞相关抗原4的抑制剂,程序性死亡1/程序性死亡配体1和淋巴细胞激活基因3,还有更多正在开发中。ICIs通常与不同的毒性有关,称为免疫相关不良事件,它可以在治疗期间出现,或者不那么频繁地出现在晚期,通常与免疫系统的过度激活有关。急性心血管免疫相关不良事件如心肌炎是罕见的;然而,数据表明慢性心血管后遗症正在出现。这篇综述介绍了ICIs在肿瘤学中的现状,重点关注与心脏病学相关的重要方面。
    Immune checkpoint inhibitors (ICIs) are a major class of immuno-oncology therapeutics that have significantly improved the prognosis of various cancers, both in (neo)adjuvant and metastatic settings. Unlike other conventional therapies, ICIs elicit antitumor effects by enhancing host immune systems to eliminate cancer cells. There are 3 approved ICI classes by the U.S. Food and Drug Administration: inhibitors targeting cytotoxic T lymphocyte associated antigen 4, programmed death 1/programmed death-ligand 1, and lymphocyte-activation gene 3, with many more in development. ICIs are commonly associated with distinct toxicities, known as immune-related adverse events, which can arise during treatment or less frequently be of late onset, usually relating to excessive activation of the immune system. Acute cardiovascular immune-related adverse events such as myocarditis are rare; however, data suggesting chronic cardiovascular sequelae are emerging. This review presents the current landscape of ICIs in oncology, with a focus on important aspects relevant to cardiology.
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  • 文章类型: Journal Article
    ShcSH2结构域结合蛋白1(SHCBP1),与Src同源物和胶原蛋白同源物(Shc)的SH2结构域特异性结合的蛋白质,参与各种信号转导途径的调节,据报道,这与肿瘤发生和进展有关。然而,病理机制尚未完全研究。因此,本研究旨在全面阐明SHCBP1在多种癌症类型中的潜在功能.SHCBP1在各种肿瘤中的综合分析,包括基因表达,诊断,预后,免疫相关特征,遗传改变,和功能富集,是基于多个数据库和分析工具进行的。SHCBP1在大多数类型的癌症中上调。qRT-PCR结果证实,SHCBP1mRNA在肺腺癌(LUAD)和肝细胞肝癌(LIHC)细胞系中明显上调。基于接收机工作特性(ROC)和生存分析,SHCBP1被认为是潜在的诊断和预后生物标志物。此外,根据SHCBP1表达与免疫细胞浸润的相关性分析,SHCBP1表达与肿瘤免疫和免疫抑制微环境有关,免疫检查点基因,和免疫相关基因(MHC基因,趋化因子,和趋化因子受体)。此外,SHCBP1表达与肿瘤突变负荷(TMB)相关,微卫星不稳定性(MSI),和新抗原。鉴定了泛癌症中SHCBP1突变景观的特征。最后,我们重点研究SHCBP1在LUAD中的临床意义和潜在的生物学作用。我们的研究全面揭示了SHCBP1可以被鉴定为癌症诊断和预后的免疫相关生物标志物。和肿瘤免疫治疗的潜在治疗靶点。
    Shc SH2-domain binding protein 1 (SHCBP1), a protein specific binding to SH2 domain of Src homolog and collagen homolog (Shc), takes part in the regulation of various signal transduction pathways, which has been reported to be associated with tumorigenesis and progression. However, the pathological mechanisms are not completely investigated. Thus, this study aimed to comprehensively elucidate the potential functions of SHCBP1 in multiple cancer types. The comprehensive analyses for SHCBP1 in various tumors, including gene expression, diagnosis, prognosis, immune-related features, genetic alteration, and function enrichment, were conducted based on multiple databases and analysis tools. SHCBP1 was upregulated in most types of cancers. The results of qRT-PCR had confirmed that SHCBP1 mRNA was significantly upregulated in lung adenocarcinoma (LUAD) and liver hepatocellular carcinoma (LIHC) cell lines. Based on the receiver operating characteristic (ROC) and survival analysis, SHCBP1 was considered as a potential diagnostic and prognostic biomarker. Furthermore, SHCBP1 expression was linked with tumor immunity and immunosuppressive microenvironment according to the correlation analysis of SHCBP1 expression with immune cells infiltration, immune checkpoint genes, and immune-related genes (MHC genes, chemokines, and chemokines receptors). Moreover, SHCBP1 expression correlated with tumor mutational burden (TMB), microsatellite instability (MSI), and neoantigens. The feature of SHCBP1 mutational landscape in pan-cancer was identified. Finally, we focused on investigating the clinical significance and the potential biological role of SHCBP1 in LUAD. Our study comprehensively uncovered that SHCBP1 could be identified as an immune-related biomarker for cancer diagnosis and prognosis, and a potential therapeutic target for tumor immunotherapy.
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  • 文章类型: Journal Article
    基因组不稳定性仍然是癌症的有利特征,并促进恶性转化。DNA损伤反应(DDR)途径的改变允许基因组不稳定,产生新抗原,上调程序性死亡配体1(PD-L1)的表达,并与信号传导如干扰素基因的环GMP-AMP合酶-刺激物(cGAS-STING)信号传导相互作用。这里,我们回顾了DDR途径的基本知识,DDR改变引起的基因组不稳定性的机制,DDR改变对免疫系统的影响,以及DDR改变作为生物标志物和治疗靶点在癌症免疫治疗中的潜在应用。
    Genomic instability remains an enabling feature of cancer and promotes malignant transformation. Alterations of DNA damage response (DDR) pathways allow genomic instability, generate neoantigens, upregulate the expression of programmed death ligand 1 (PD-L1) and interact with signaling such as cyclic GMP-AMP synthase-stimulator of interferon genes (cGAS-STING) signaling. Here, we review the basic knowledge of DDR pathways, mechanisms of genomic instability induced by DDR alterations, impacts of DDR alterations on immune system, and the potential applications of DDR alterations as biomarkers and therapeutic targets in cancer immunotherapy.
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  • 文章类型: Case Reports
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