Structural simplification

结构简化
  • 文章类型: Journal Article
    天然产物是发现新型作物保护剂的宝贵资源。一系列γ-丁内酯衍生物,来源于鬼臼毒素结构的简化,合成并评估其抗烟草花叶病毒(TMV)的功效。几种衍生物表现出显著的抗病毒性能,化合物3g表现出最有效的体内抗TMV活性。在500μg/mL时,化合物3g达到87.8%的灭活效果,71.7%的保护效果,疗效达67.7%,超过商业植物病毒制剂宁南霉素和利巴韦林的效力。值得注意的是,与抗-非对映异构体(抗-3g)相比,syn-非对映异构体(syn-3g)表现出优异的抗病毒活性。机理研究表明,syn-3g可以与TMV外壳蛋白结合并干扰TMV颗粒的自组装过程。这些结果表明,化合物3g,化学结构简单,可能是开发用于作物保护的新型抗病毒剂的潜在候选者。
    Natural products are a valuable resource for the discovery of novel crop protection agents. A series of γ-butyrolactone derivatives, derived from the simplification of podophyllotoxin\'s structure, were synthesized and assessed for their efficacy against tobacco mosaic virus (TMV). Several derivatives exhibited notable antiviral properties, with compound 3g demonstrating the most potent in vivo anti-TMV activity. At 500 μg/mL, compound 3g achieved an inactivation effect of 87.8%, a protective effect of 71.7%, and a curative effect of 67.7%, surpassing the effectiveness of the commercial plant virucides ningnanmycin and ribavirin. Notably, the syn-diastereomer (syn-3g) exhibited superior antiviral activity compared to the anti-diastereomer (anti-3g). Mechanistic studies revealed that syn-3g could bind to the TMV coat protein and interfere with the self-assembly process of TMV particles. These findings indicate that compound 3g, with its simple chemical structure, could be a potential candidate for the development of novel antiviral agents for crop protection.
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  • 文章类型: Journal Article
    在我们之前的研究中,我们报道了一系列N-(9,10-蒽醌-2-羰基)氨基酸衍生物作为黄嘌呤氧化酶(XO)的新型抑制剂。认识到与蒽醌部分相关的次优药物样特性,在目前的调查中,我们开始了非蒽醌药物化学的探索。通过系统的结构-活性关系(SAR)研究,我们鉴定了一系列4-(异戊氧基)-3-硝基苯甲酰胺衍生物,它们对XO具有优异的体外效力。优化后的化合物,4-异戊氧基-N-(1H-吡唑-3-基)-3-硝基苯甲酰胺(6k),表现出优异的体外效力,IC50值为0.13μM。化合物6k显示出有利的药物样特征,配体效率(LE)和亲脂性配体效率(LLE)值分别为0.41和3.73。与初始化合物1d相比,6k表现出IC50的显著24倍改善,以及LE的1.6倍增强和LLE的3.7倍增加。分子建模研究提供了对6k与活性位点内关键氨基酸残基的强相互作用的见解。此外,体内低尿酸研究令人信服地表明,6k显着降低了大鼠的血清尿酸水平。MTT结果显示化合物6k对健康细胞是无毒的。胃和肠稳定性试验证明化合物6k在胃和肠环境中表现出良好的稳定性。总之,6k化合物作为一种有前途的铅化合物出现,展示了卓越的体外效力和良好的药物样特征,因此需要进一步探索。
    In our previous study, we reported a series of N-(9,10-anthraquinone-2-carbonyl) amino acid derivatives as novel inhibitors of xanthine oxidase (XO). Recognizing the suboptimal drug-like properties associated with the anthraquinone moiety, we embarked on a nonanthraquinone medicinal chemistry exploration in the current investigation. Through systematic structure-activity relationship (SAR) studies, we identified a series of 4-(isopentyloxy)-3-nitrobenzamide derivatives exhibiting excellent in vitro potency against XO. The optimized compound, 4-isopentyloxy-N-(1H-pyrazol-3-yl)-3-nitrobenzamide (6k), demonstrated exceptional in vitro potency with an IC50 value of 0.13 μM. Compound 6k showed favorable drug-like characteristics with ligand efficiency (LE) and lipophilic ligand efficiency (LLE) values of 0.41 and 3.73, respectively. In comparison to the initial compound 1d, 6k exhibited a substantial 24-fold improvement in IC50, along with a 1.6-fold enhancement in LE and a 3.7-fold increase in LLE. Molecular modeling studies provided insights into the strong interactions of 6k with critical amino acid residues within the active site. Furthermore, in vivo hypouricemic investigations convincingly demonstrated that 6k significantly reduced serum uric acid levels in rats. The MTT results revealed that compound 6k is nontoxic to healthy cells. The gastric and intestinal stability assay demonstrated that compound 6k exhibits good stability in the gastric and intestinal environments. In conclusion, compound 6k emerges as a promising lead compound, showcasing both exceptional in vitro potency and favorable drug-like characteristics, thereby warranting further exploration.
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  • 文章类型: Journal Article
    天然产物一直是高效和低风险农药的宝贵来源。在这项工作中,通过呋喃木脂素白菊酯II的结构简化,设计并合成了一系列新型的芝麻素衍生物A0-A31和B0-B4,并对其抗病毒和抗菌活性进行了系统评价。生物测定结果表明,化合物A24对烟草花叶病毒(TMV)具有显著的灭活活性,EC50值为130.4μg/mL,优于市售宁南霉素(EC50=202.0μg/mL)。抗病毒作用模式试验表明,化合物A24可能通过与TMV外壳蛋白(CP)结合而阻碍自组装,从而抵抗TMV感染。此外,化合物A25具有显著的抗菌活性,特别是针对EC50值为43.8μg/mL的青枯菌,比商业双甲噻唑和噻二唑铜更好。本研究为呋喃木脂素在作物保护中的利用奠定了坚实的基础。
    Natural products have been a valuable source of efficient and low-risk pesticides. In this work, a series of novel sesamolin derivatives A0-A31 and B0-B4 were designed and synthesized via structural simplification of furofuran lignan phrymarolin II, and their antiviral and antibacterial activities were systematically evaluated. The bioassay results showed that compound A24 displayed remarkable inactivation activity against tobacco mosaic virus (TMV) with an EC50 value of 130.4 μg/mL, which was superior to that of commercial ningnanmycin (EC50 = 202.0 μg/mL). The antiviral mode of action assays suggested that compound A24 may obstruct self-assembly by binding to TMV coat protein (CP), thus resisting the TMV infection. In addition, compound A25 possessed prominent antibacterial activities, especially against Ralstonia solanacearum with an EC50 value of 43.8 μg/mL, which is better than those of commercial bismerthiazol and thiodiazole copper. This research lays a solid foundation for the utilization of furofuran lignans in crop protection.
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  • 文章类型: Journal Article
    通过简化cryptolepine的结构,设计并合成了一系列喹啉衍生物,并评估了它们对六种植物病原真菌的杀菌活性。这些化合物中的大多数在体外对灰葡萄孢表现出显着的活性。其中,化合物A18和L01显示出优越的抗真菌活性。重要的是,与隐托利平相比,化合物A18对灰霉病菌具有广谱抑制活性,菌核病,solani根瘤菌,辣椒疫霉,稻瘟病菌,和镰刀菌,各自的EC50值为0.249、1.569、3.915、0.505、0.246和4.999μg/mL。化合物L01对灰芽孢杆菌表现出最佳的抗真菌活性,EC50值为0.156μg/mL。初步机理研究表明,化合物A18能抑制孢子萌发,影响细胞膜的通透性,增加活性氧的含量,并影响菌丝和细胞的形态。此外,化合物A18对灰霉病菌表现出优异的体内保护作用,比吡甲酰更有效,与隐托雷平相当。这些结果证明,化合物A18显示出优异的杀真菌活性,并且可能是针对植物真菌病的潜在杀真菌候选物。
    A series of quinoline derivatives were designed and synthesized by the structural simplification of cryptolepine and evaluated for their fungicidal activity against six phytopathogenic fungi. Most of these compounds exhibited remarkable activities against Botrytis cinereain vitro. Among them, compounds A18 and L01 showed superior antifungal activity. Significantly, compared to cryptolepine, compound A18 exhibited broad-spectrum inhibitory activities against B. cinerea, Sclerotinia sclerotiorum, Rhizoctonia solani, Phytophthora capsica, Magnaporthe oryzae, and Fusarium graminearum with the respective EC50 values of 0.249, 1.569, 3.915, 0.505, 0.246, and 4.999 μg/mL. Compound L01 displayed the best antifungal activity against B. cinerea with an EC50 value of 0.156 μg/mL. Preliminary mechanistic studies showed that compound A18 could inhibit spore germination, affect the permeability of the cell membrane, increase the content of reactive oxygen species, and affect the morphology of hyphae and cells. Moreover, compound A18 showed excellent in vivo protective effect against B. cinerea, which was more potent than pyrimethanil and equitant to cryptolepine. These results evidenced that compound A18 displayed superior fungicidal activities and could be a potential fungicidal candidate against plant fungal diseases.
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  • 文章类型: Journal Article
    作为Toll样受体(TLRs)家族的重要成员,TLR2可以识别各种病原体相关分子模式(PAMP),例如细菌和病毒成分。越来越多的证据表明TLR2激动剂在癌症免疫疗法和感染性疾病中起关键作用。Dietrocim是已知的最有效的小分子TLR2激动剂,在小鼠中显示出显著的免疫佐剂活性。然而,由于其结构的复杂性以及高分子量,进一步的临床研究和开发受到阻碍。这里,我们设计并合成了21种结构简化的双去势衍生物,通过HEK-BluehTLR2SEAP测定法进行TLR2激动活性,并评估了两种人类正常细胞系的毒性。通过构效关系研究发现化合物B3-B4和B9-B12具有优异的TLR2激动活性。其中,具有简单的(R)-和(S)-正丁基的二阿罗西姆的非对映体B10和B12取代的(S)-2-苯基环丙基酰胺侧链表现出相当的TLR2激动活性,EC50值为35nM和39nM,分别。对THP-1细胞的ELISA和westernblot实验表明,B10和B12通过激活MyD88依赖性NF-κB和MAPK信号通路,在释放各种炎性细胞因子方面表现出显著的免疫刺激活性。重要的是,B10和B12的结构复杂性和更好的安全性相比,Diprovencim,右吡咯烷环的手性中心对TLR2的活性影响可忽略不计。我们的研究提供了具有高激动活性的简化的Dietrocim衍生物,为进一步优化Diprovencim提供了线索。
    As an important family member of Toll-like receptors (TLRs), TLR2 can recognize various pathogen-associated molecular patterns (PAMPs) such as bacteria and viral components. Accumulating evidence demonstrates that TLR2 agonists play a critical role in cancer immunotherapy and infectious diseases. Diprovocim is the most potent small molecule TLR2 agonist known, showing remarkably immune adjuvant activity in mice. However, the further clinical research and development of Diprovocim was hampered because of its structural complexity as well as high molecular weight. Here, we designed and synthesized 21 structurally simplified derivatives of Diprovocim, performed their TLR2 agonistic activities by HEK-Blue hTLR2 SEAP assay, and evaluated the toxicity in two human normal cell lines. Compounds B3-B4 and B9-B12 with excellent TLR2 agonistic activity were found through the structure-activity relationship study. Among them, diastereomer B10 and B12 substituted (S)-2-phenylcyclopropylamide side chain of Diprovocim with simple (R)- and (S)-n-butyl groups exhibited comparable TLR2 agonistic activities with EC50 values of 35 nM and 39 nM, respectively. ELISA and western blot experiments on THP-1 cells showed that B10 and B12 displayed remarkable immunostimulatory activity in the release of various inflammatory cytokines through activating MyD88-dependent NF-κB and MAPK signaling pathways. Importantly, B10 and B12 have less structural complexity and better safety compared to Diprovocim, and the chiral center of right pyrrolidine ring has negligible influence on TLR2 activition. Our study provides simplified Diprovocim derivatives with high agonistic activity, providing a clue to further optimize Diprovocim.
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  • 文章类型: Journal Article
    天然产物冬凌草甲素具有成为广谱抗肿瘤剂的潜力。为了开发高效的冬凌草甲素类似物,通过去除母体化合物的多个羟基,设计并合成了一系列新型的冬凌草甲素类似物。代表性类似物14、19和26对K562、MDA-MB-231、SMMC-7721和MCF-7细胞表现出有效的抗癌作用。对其14-OH进行进一步的结构修饰产生了更有效的衍生物16n,21d,和28d分别,其中化合物16n在K562细胞中的IC50值是亲本冬凌草甲素的50倍。此外,化合物16n显著诱导K562细胞在G2期的细胞周期阻滞,并增加凋亡细胞的比例。重要的是,化合物16n,21d,和28d在体内H22同种异体移植小鼠中表现出良好的抗肿瘤活性。这些结果表明,化合物16n,21d,和28d值得进一步发展,成为有希望的癌症治疗候选药物。
    The natural product oridonin has the potential to be a broad-spectrum antineoplastic agent. To develop oridonin analogues with high potency, a series of novel oridonin analogues were designed and synthesized by removing the multiple hydroxyl groups of parent compound. The representative analogues 14, 19, and 26 exhibited potent anticancer effects against K562, MDA-MB-231, SMMC-7721, and MCF-7 cells. Further structural modification on their 14-OH generated more potent derivatives 16n, 21d, and 28d respectively, in which the IC50 value of compound 16n was 50-fold more potent than parent oridonin in K562 cells. Furthermore, compound 16n significantly induced the cell cycle arrest of K562 cells at the G2 phase and increased the fraction of apoptotic cells. Importantly, compounds 16n, 21d, and 28d exhibited good antitumor activities in H22 allograft mice in vivo. These results suggest that compounds 16n, 21d, and 28d deserve further development as promising candidates for the treatment of cancers.
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  • 文章类型: Journal Article
    阿尔茨海默病(AD)是一种神经退行性疾病,预计到2040年将成为第二大死亡原因。AD的特征在于导致痴呆和执行日常功能的能力丧失的进行性记忆损害。除了突触中乙酰胆碱释放的缺乏,还有其他机制可以解释这种疾病的病因。最有争议的是与受损蛋白β-淀粉样蛋白(Aβ)和神经元内外过度磷酸化tau的积累有关,分别。麦角酸衍生物已被证明具有有希望的抗阿尔茨海默作用。此外,麦角酸结构包括乙酰胆碱酯酶抑制的一般结构要求。在这项研究中,十六个类似物,源自麦角酸结构,是合成的。对4-溴吲哚核进行Heck和Mannich反应以产生潜在的活性类似物。其中一些随后通过硝基甲烷和锌还原程序环化。这些化合物中的一些显示出比目前使用的抗阿尔茨海默病药物多奈哌齐更强的神经保护和抗炎作用。一些合成的化合物显示出明显的乙酰胆碱酯酶抑制作用。通过计算机模拟建模,与合成的化合物相比,测试了十二种归因于AD病因的分子靶标。将建模的对接得分相对于化合物的体外活性作图。具有最强正相关性的是ULK-1,其在自噬中具有重要作用。
    Alzheimer\'s disease (AD) is a neurodegenerative disorder, projected to be the second leading cause of mortality by 2040. AD is characterized by a progressive impairment of memory leading to dementia and loss of ability to carry out daily functions. In addition to the deficiency of acetylcholine release in synapse, there are other mechanisms explaining the etiology of the disease. The most disputing ones are associated with the accumulation of damaged proteins β-amyloid (Aβ) and hyperphosphorylated tau outside and inside neurons, respectively. Lysergic acid derivatives have been shown to possess promising anti-Alzheimer effect. Moreover, lysergic acid structure encompasses the general structural requirements for acetylcholinesterase inhibition. In this study, sixteen analogues, derived from lysergic acid structure, were synthesized. Heck and Mannich reactions were carried out to 4-bromo indole nucleus to generate potentially active analogues. Some of them were subsequently cyclized by nitromethane and zinc reduction procedures. Some of these compounds showed neuroprotective and anti-inflammatory effects stronger than the currently used anti-Alzheimer drug; donepezil. Some of the synthesized com-pounds showed a noticeable acetylcholinesterase inhibition. Twelve molecular targets attributed with AD etiology were tested versus the synthesized compounds by in silico modeling. Docking scores of modeling were plotted against in vitro activity of the compounds. The one afforded the strongest positive correlation was ULK-1 which has a significant role in autophagy.
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  • 文章类型: Journal Article
    天然产物(NPs)在抗肿瘤药物的发现和开发中起着至关重要的作用。然而,NP的高结构复杂性通常导致不利的物理化学特征和不良的药物相似性。解决此障碍的有力策略是通过截断非必要结构来简化NP的结构。在这里,通过消除NP右二胺的D环来设计一系列四氢-β-咔啉衍生物。结构-活性关系研究导致发现化合物45,其对所有测试的癌细胞系表现出高度有效的抗肿瘤活性,并且在低毒性的HCT116异种移植模型中表现出优异的体内抗肿瘤活性。进一步的机制研究表明,化合物45通过双重Top1/2抑制起作用,并诱导caspase依赖性细胞凋亡并伴有G2/M细胞周期停滞。这项概念验证研究验证了结构简化在基于NP的药物开发中的有效性,发现化合物45是一种有效的抗肿瘤先导化合物,并丰富了evodiamine的构效关系。
    Natural products (NPs) have played a crucial role in the discovery and development of antitumor drugs. However, the high structural complexity of NPs generally results in unfavorable physicochemical profiles and poor drug-likeness. A powerful strategy to tackle this obstacle is the structural simplification of NPs by truncating nonessential structures. Herein, a series of tetrahydro-β-carboline derivatives were designed by elimination of the D ring of NP evodiamine. Structure-activity relationship studies led to the discovery of compound 45, which displayed highly potent antitumor activity against all the tested cancer cell lines and excellent in vivo antitumor activity in the HCT116 xenograft model with low toxicity. Further mechanistic research indicated that compound 45 acted by dual Top1/2 inhibition and induced caspase-dependent cell apoptosis coupled with G2/M cell cycle arrest. This proof-of-concept study validated the effectiveness of structural simplification in NP-based drug development, discovered compound 45 as a potent antitumor lead compound and enriched the structure-activity relationships of evodiamine.
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  • 文章类型: Journal Article
    双孔通道2(TPC2)的作用,位于内溶酶体膜上的少数阳离子通道之一,对癌症的了解仍然很少。这里,我们报道TPC2基因敲除在体外降低癌细胞的增殖,影响他们的能量代谢,并成功地消除了体内肿瘤的生长。同时,通过筛选合成的苄基四氢呋喃异喹啉衍生物库,我们开发了生物碱粉防己碱的简化类似物作为有效的TPC2抑制剂.与粉防己碱相比,去除前导分子粉防己碱的可有可无的亚结构会增加对癌细胞的抗增殖特性,并在更大程度上损害内皮细胞的促血管生成信号。同时,减少了对非癌细胞的毒性作用,允许体内给药并揭示在小鼠中具有抗肿瘤功效的TPC2抑制剂。因此,我们的研究揭示了TPC2是癌症治疗的有效靶点,并提供了易于获得的粉防己碱类似物作为有效药理干扰的有前景的选择.
    The role of two-pore channel 2 (TPC2), one of the few cation channels localized on endolysosomal membranes, in cancer remains poorly understood. Here, we report that TPC2 knockout reduces proliferation of cancer cells in vitro, affects their energy metabolism, and successfully abrogates tumor growth in vivo. Concurrently, we have developed simplified analogs of the alkaloid tetrandrine as potent TPC2 inhibitors by screening a library of synthesized benzyltetrahydroisoquinoline derivatives. Removal of dispensable substructures of the lead molecule tetrandrine increases antiproliferative properties against cancer cells and impairs proangiogenic signaling of endothelial cells to a greater extent than tetrandrine. Simultaneously, toxic effects on non-cancerous cells are reduced, allowing in vivo administration and revealing a TPC2 inhibitor with antitumor efficacy in mice. Hence, our study unveils TPC2 as valid target for cancer therapy and provides easily accessible tetrandrine analogs as a promising option for effective pharmacological interference.
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  • 文章类型: Journal Article
    分子伴侣热休克蛋白90(Hsp90)是癌症治疗的有希望的靶标。天然产物乌头碱是我们先前工作中报道的潜在Hsp90抑制剂。在这项研究中,我们通过简化和修饰乌头碱支架,设计并合成了一系列2-((1-苯基-1H-1,2,3-三唑-4-基)甲基)-2-氮杂双环[3.2.1]辛-3-酮衍生物作为有效的Hsp90抑制剂。在这些化合物中,14t对LoVo细胞表现出优异的抗增殖活性,IC50值为0.02μM,Hsp90α抑制活性显著,IC50值为0.71nM。分子对接研究提供了14t与Hsp90α复合物的合理结合模型。随后的细胞周期和凋亡测定表明,化合物14t可以通过上调bax和cleaved-caspase3蛋白的表达,同时抑制bcl-2的表达,将细胞周期阻滞在G1/S期,并诱导细胞凋亡。此外,14t可以抑制LoVo和SW620细胞系中的细胞迁移。与体外结果一致,14t在SW620异种移植小鼠模型中显著抑制肿瘤生长。
    The molecular chaperone heat shock protein 90 (Hsp90) is a promising target for cancer therapy. Natural product aconitine is a potential Hsp90 inhibitor reported in our previous work. In this study, we designed and synthesized a series of 2-((1-phenyl-1H-1,2,3-triazol-4-yl)methyl)-2-azabicyclo[3.2.1]octan-3-one derivatives as potent Hsp90 inhibitors by simplifying and modifying aconitine scaffold. Among these compounds, 14t exhibited an excellent antiproliferative activity against LoVo cells with an IC50 value of 0.02 μM and a significant Hsp90α inhibitory activity with an IC50 value of 0.71 nM. Molecular docking studies provided a rational binding model of 14t in complex with Hsp90α. The following cell cycle and apoptosis assays revealed that compound 14t could arrest cell cycle at G1/S phase and induce cell apoptosis via up-regulation of bax and cleaved-caspase 3 protein expressions while inhibiting the expressions of bcl-2. Moreover, 14t could inhibit cell migration in LoVo and SW620 cell lines. Consistent with in vitro results, 14t significantly repressed tumor growth in the SW620 xenograft mouse model.
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