Structural elucidation

结构阐明
  • 文章类型: Journal Article
    四个先前未报告的苯丙素糖苷(1-4),连同四个已知的类似物(5-8),是从龙葵的叶子中分离出来的。基于光谱分析(HR-ESI-MS,NMR,IR,UV)和化学方法。此外,通过在H2O2诱导的OLN-93细胞损伤模型中测量其细胞活力来评估所有分离株的神经保护活性。
    Four previously unreported phenylpropanoid glycosides (1-4), together with four known analogues (5-8), were isolated from the leaves of Illicium dunnianum. The structures of these new compounds were elucidated based on spectroscopic analysis (HR-ESI-MS, NMR, IR, UV) and chemical methods. In addition, the neuroprotective activities of all the isolates were evaluated by measuring their cell viability in H2O2-induced OLN-93 cell injury model.
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  • 文章类型: Journal Article
    鞘糖脂(GSL)是代表大部分鞘脂类的高度异质的脂质类别。GSL是细胞膜的基本成分,在各种生物过程中起关键作用,例如蜂窝信号,认可,和附着力。了解GSL的结构复杂性对于揭示其在生物学背景下的功能意义至关重要。特别是它们在各种疾病的病理生理学中的关键作用。质谱(MS)已成为GSL结构阐明的通用且不可或缺的工具,能够更深入地了解其复杂的分子结构及其在细胞动力学和病理生理学中的关键作用。这里,我们全面概述了为GSL分析量身定制的MS技术,强调它们在探测GSL复杂结构方面的效用,以促进我们对GSL在健康和疾病中的功能相关性的理解。使用多种片段化技术的串联MS的应用,包括新颖的离子活化方法,在研究聚糖序列时,连杆位置,和脂肪酸组成被广泛讨论。最后,我们应对当前的挑战,例如低丰度物种的检测和复杂光谱的解释,并通过改进MS仪器以提高灵敏度和分辨率,提供潜在解决方案和未来方向的见解,开发新的电离技术,或将MS与其他分析方法相结合,以实现全面的GSL表征。
    Glycosphingolipids (GSL) are a highly heterogeneous class of lipids representing the majority of the sphingolipid category. GSL are fundamental constituents of cellular membranes that have key roles in various biological processes, such as cellular signaling, recognition, and adhesion. Understanding the structural complexity of GSL is pivotal for unraveling their functional significance in a biological context, specifically their crucial role in the pathophysiology of various diseases. Mass spectrometry (MS) has emerged as a versatile and indispensable tool for the structural elucidation of GSL enabling a deeper understanding of their complex molecular structures and their key roles in cellular dynamics and patholophysiology. Here, we provide a thorough overview of MS techniques tailored for the analysis of GSL, emphasizing their utility in probing GSL intricate structures to advance our understanding of the functional relevance of GSL in health and disease. The application of tandem MS using diverse fragmentation techniques, including novel ion activation methodologies, in studying glycan sequences, linkage positions, and fatty acid composition is extensively discussed. Finally, we address current challenges, such as the detection of low-abundance species and the interpretation of complex spectra, and offer insights into potential solutions and future directions by improving MS instrumentation for enhanced sensitivity and resolution, developing novel ionization techniques, or integrating MS with other analytical approaches for comprehensive GSL characterization.
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  • 文章类型: Journal Article
    Paeoniaostii,又称“风丹”,在民间医学治疗腰肌劳损有至关重要的作用,膝骨关节炎和颈椎病。在这项研究中,四种新的酚类化合物,特别是PaeoniaostiphA-E(1-4)酚类化合物通过光谱技术进行表征,包括1D和2DNMR,HRESIMS,UV,IR,和电子圆二色性计算来探索它们的结构。还研究了新酚类化合物的细胞毒性和NO产生抑制。细胞毒性实验的结果表明,化合物1对两种人癌细胞系具有细胞毒性,IC50值为13.3至13.5μM。化合物1和2对NO产生显示出一定的抑制活性。这是关于从天然来源中分离成分的第一份报告。
    The Paeonia ostii, also known as \"Feng Dan\" have a crucial role in folk medicine to treat lumbar muscles strain, knee osteoarthritis and cervical spondylosis. In this study, four new phenolic compounds, specifically Paeoniaostiph A-E (1-4) phenolic compounds were characterised through spectroscopic techniques, including 1D and 2D NMR, HRESIMS, UV, IR, and electronic circular dichroism computations to explore their structures. Cytotoxicity and NO production inhibition of the new phenolic compounds were also studied. The results of the cytotoxicity experiment showed that compound 1 is cytotoxic to two human cancer cell lines with IC50 values ranging from 13.3 to 13.5 μM. Compounds 1 and 2 showed certain inhibitory activity on NO production. This is the first report on isolating the components from natural sources.
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  • 文章类型: Journal Article
    藤黄藤叶和树枝的植物化学研究。导致分离出十二种先前未描述的depsidone衍生物(oligthantdepidonesA-L,1-12).通过广泛的光谱分析,包括1H和13CNMR,阐明了它们的结构。HSQC,HMBC和NOESY以及HRESIMS。使用DFT-NMR化学位移计算和DP4方法最终确定了寡蒽缩酮G和J的结构。在四种人类癌细胞系中进行的细胞毒性试验表明,寡坦比西酮F对A375(黑色素瘤)具有相对较强的细胞毒性作用,A549(肺癌),HepG2(肝癌),和MCF-7(乳腺癌)细胞系,IC50为18.71、15.44、10.92和15.90μM,分别。通过CCK-8试验还观察到了寡安比西酮F对这些细胞系的剂量和时间依赖性抗增殖作用。通过荧光显微镜和流式细胞术在这些细胞系中确定,寡坦比西酮F能促进细胞凋亡,导致细胞增殖的抑制。伤口愈合实验和transwell实验结果表明,寡坦比西酮F可以浓度依赖性地抑制A549和MCF-7细胞系的迁移和侵袭。
    Phytochemical studies on the leaves and twigs of Garcinia oligantha Merr. led to the isolation of twelve previously undescribed depsidone derivatives (oliganthdepsidones A-L, 1-12). Their structures were elucidated by extensive spectroscopic analysis including 1H and 13C NMR, HSQC, HMBC and NOESY along with HRESIMS. The structures of oliganthdepsidones G and J were finally determined using DFT-NMR chemical shift calculations and DP4+ methods. Cytotoxicity test in four human cancer cell lines indicated that oliganthdepsidone F had relatively strong cytotoxic effect against A375 (melanoma), A549 (lung cancer), HepG2 (liver cancer), and MCF-7 (breast cancer) cell lines with IC50 of 18.71, 15.44, 10.92, and 15.90 μM, respectively. The dose- and time-dependent antiproliferative effects of oliganthdepsidone F on these cell lines were also observed by CCK-8 test. As determined by fluorescent microscopy and flow cytometry in these cell lines, oliganthdepsidone F could promote cell apoptosis, leading to the inhibition of cell proliferation. The results of wound healing assay and transwell assay showed that oliganthdepsidone F could inhibit the migration and invasion of A549 and MCF-7 cell lines in a concentration-dependent manner.
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  • 文章类型: Journal Article
    两种罕见的8-羟基类固醇糖苷(6-7),及其下游代谢物(1-5)具有前所未有的6/6/5/5/5-五环支架,从Strophanthusdivaricatus的树枝和叶子中分离出七个已知的类似物(8-14)。通过分析光谱和ECD数据,完全指定了它们的结构,NMR计算,X射线晶体学研究,和化学方法。此外,评估了1-14对肝癌和肺癌细胞系的抑制作用,并初步探讨了构效关系。基于数据独立采集(DIA)的定量蛋白质组学分析和H1299细胞的生物学验证表明,该化合物家族可能通过抑制DNA损伤反应(DDR)和mTOR/S6K信号通路而发挥抗癌作用。
    Two rare 8-hydroxysteroid glycosides (6-7), and their downstream metabolites (1-5) with an unprecedented 6/6/5/5/5-pentacyclic scaffold, together with seven known analogues (8-14) were isolated from the twigs and leaves of Strophanthus divaricatus. Their structures were fully assigned by analysis of the spectroscopic and ECD data, NMR calculations, X-ray crystallographic study, and chemical methods. In addition, the inhibitory effects of 1-14 on liver and lung cancer cell lines were evaluated, and preliminary structure-activity relationship was discussed. Data-independent acquisition (DIA)-based quantitative proteomic analysis and biological verification of H1299 cells suggested that this family of compounds may play an anticancer role by suppressing both DNA damage response (DDR) and mTOR/S6K signaling pathways.
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  • 文章类型: Journal Article
    海南塔拉酵母,从红树林土壤中分离出来,通过形态学观察和系统发育分析被表征为新物种。在OSMAC和分子网络方法的帮助下,从真菌T.hainanensisWHUF0341中鉴定出了四种新的γ-内酰胺生物碱talaroilactamsA-D(1-4)和两种已报道的化合物哈齐酸(5)和异哈齐酸(6)。通过ECD计算和光谱分析确定它们的结构。此外,还提出了1-4的生物合成路线。化合物1对HepG2细胞系表现出有效的细胞毒性,IC50值为10.75±1.11μM。此外,网络药理学被用来解剖可能的机制有助于抗肝细胞癌的作用,化合物1,揭示细胞毒性主要与蛋白水解有关,自噬的负调节,炎症反应,和肾素-血管紧张素系统。这些结果不仅扩大了红树林相关真菌天然产物的化学空间,而且为开发抗肝细胞癌药物提供了有希望的先导化合物。
    The fungus Talaromyces hainanensis, isolated from the mangrove soil, was characterized as a novel species by morphology observation and phylogenetic analyses. Four new γ-lactam alkaloids talaroilactams A-D (1-4) and two reported compounds harzianic acid (5) and isoharzianic acid (6) were identified from the fungus T. hainanensis WHUF0341, assisted by OSMAC along with molecular networking approaches. Their structures were determined through ECD calculations and spectroscopic analyses. Moreover, the biosynthetic route of 1-4 was also proposed. Compound 1 displayed potent cytotoxicity against HepG2 cell lines, with an IC50 value of 10.75 ± 1.11 μM. In addition, network pharmacology was employed to dissect the probable mechanisms contributing to the antihepatocellular carcinoma effects of compound 1, revealing that cytotoxicity was mainly associated with proteolysis, negative regulation of autophagy, inflammatory response, and the renin-angiotensin system. These results not only expanded the chemical space of natural products from the mangrove associated fungi but also afforded promising lead compounds for developing the antihepatocellular carcinoma agents.
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  • 文章类型: Journal Article
    五个未描述的atranones,即atranonesV-Z(1-5),三种未描述的dolabellane型二萜,即stachatranonesD-F(7-9),连同四个已知的同源物(6和10-12),是从与产毒真菌Stachybotryschartarum的珊瑚相关菌株中获得的。通过广泛的光谱分析阐明了它们的结构,主要包括HRESIMS和NMR数据,单晶X射线衍射分析,电子圆二色性计算,和[Mo2(OAc)4]诱导的圆二色光谱。心肌细胞保护活性测定显示,化合物9在冷缺血(CI)后24小时以剂量依赖性方式显著改善冷缺血损伤。此外,化合物9预防CI在CI后12小时以剂量依赖性方式诱导磷脂酰肌醇-3-激酶和RAC-α丝氨酸/苏氨酸蛋白激酶的去磷酸化。在这项工作中,未描述的化合物9可以显著保护心肌细胞免受冷缺血损伤,强调了作为心脏移植医学中新型心脏保护剂的设计和开发潜力。
    Five undescribed atranones, namely atranones V-Z (1-5), three undescribed dolabellane-type diterpenoids, namely stachatranones D-F (7-9), together with four known congeners (6 and 10-12), were obtained from a coral-associated strain of the toxigenic fungus Stachybotrys chartarum. Their structures were elucidated via extensive spectroscopic analyses, mainly including the HRESIMS and NMR data, single-crystal X-ray diffraction analysis, electronic circular dichroism calculation, and [Mo2(OAc)4] induced circular dichroism spectrum. The cardiomyocyte protective activity assay revealed that compound 9 significantly ameliorated cold ischemic injury at 24 h post cold ischemia (CI) in a dose-dependent manner. Moreover, compound 9 prevented CI induced dephosphorylation of phosphatidylinositol-3-kinase and RAC-α serine/threonine-protein kinase at 12 h post CI in a dose-dependent manner. In this work, the undescribed compound 9 could significantly protect cardiomyocytes against cold ischemic injury, highlighting the promising potential to be designed and developed as a novel cardioprotectant in heart transplant medicine.
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  • 文章类型: Journal Article
    一项针对新型抗真菌代谢物的研究鉴定了针对链霉菌属的丙酮提取物中关键植物病原体的有效体外抗真菌活性。菌株CA-296093。基于特征的分子网络揭示了抗霉素相关化合物的存在,导致分离出四种新化合物:escuzarmycinsA-D(1-4)。广泛的结构阐明,使用1D和2DNMR,高分辨率质谱,Marfey的分析,和噪声相关性,确认了他们的结构。测试了这些化合物对六种真菌植物病原体的生物活性,化合物3和4表现出很强的疗效,特别是针对ZymoseptoriaTritici,化合物3表现出最高效力(EC50:11nM)。两种化合物对灰葡萄孢菌和炭疽菌也显示出显著的抗真菌活性,化合物4被证明是最有效的。尽管对人类癌细胞系HepG2具有中等的细胞毒性,但化合物3和4仍可作为有希望的杀真菌剂用于对抗SeptoriaTritici斑点,炭疽病,和灰色霉菌。
    A study targeting novel antifungal metabolites identified potent in vitro antifungal activity against key plant pathogens in acetone extracts of Streptomyces sp. strain CA-296093. Feature-based molecular networking revealed the presence in this extract of antimycin-related compounds, leading to the isolation of four new compounds: escuzarmycins A-D (1-4). Extensive structural elucidation, employing 1D and 2D NMR, high-resolution mass spectrometry, Marfey\'s analysis, and NOESY correlations, confirmed their structures. The bioactivity of these compounds was tested against six fungal phytopathogens, and compounds 3 and 4 demonstrated strong efficacy, particularly against Zymoseptoria tritici, with compound 3 exhibiting the highest potency (EC50: 11 nM). Both compounds also displayed significant antifungal activity against Botrytis cinerea and Colletotrichum acutatum, with compound 4 proving to be the most potent. Despite moderate cytotoxicity against the human cancer cell line HepG2, compounds 3 and 4 emerge as promising fungicides for combating Septoria tritici blotch, anthracnose, and gray mold.
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  • 文章类型: Journal Article
    使用高效液相色谱(HPLC)进行的长期稳定性研究显示,盐酸溴己新注射液中存在不明杂质,被用作粘液溶解剂。对应力降解和元素杂质的研究表明,该注入中的元素杂质Fe3之一是这些杂质的主要发生器。这种杂质,命名为N-羧甲基溴己新,是在溴己新和酒石酸与Fe3之间的药物-赋形剂相互作用期间形成的产物。通过带二极管阵列检测器的超高效液相色谱(UHPLC-DAD)鉴定了杂质的结构,液相色谱质谱联用仪(LC-MS)。Further,讨论了杂质的形成机理。总的来说,这项研究阐明了原因,origin,以及盐酸溴己新注射液中未知杂质的机理,为盐酸溴己新注射液和同时含有胺和酒石酸的药品的质量控制提供依据。
    A long-term stability study using high performance liquid chromatography (HPLC) revealed an unidentified impurity in the bromhexine hydrochloride injection, which was employed as a mucolytic agent. Investigations into stress degradation and elemental impurities revealed one of the elemental impurities Fe3+ in this injection as the primary generator of these impurities. This impurity, named N-carboxymethyl bromhexine, was a product formed during drug-excipient interaction between bromhexine and tartaric acid with Fe3+. The structure of the impurity was identified through ultra-high-performance liquid chromatography with diode array detector (UHPLC-DAD), liquid chromatograph mass spectrometer (LC-MS). Further, the formation mechanism of the impurity was discussed. Overall, this study elucidates the cause, origin, and mechanism of an unknown impurity in bromhexine hydrochloride injection, providing a basis for quality control for bromhexine hydrochloride injections and drug products containing both amine and tartaric acid.
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  • 文章类型: Journal Article
    从药用植物非洲菊分离出一对以香豆素为基础的多环黄萜类化合物对映体()/(-)-天花A[()-1a和(-)-1b],具有独特的笼状氧杂三环[4.2.2.03,8]癸烯支架。通过全面的光谱数据和X射线衍射分析,对它们的平面和三维结构进行了详尽的表征。在假设的生物合成途径的指导下,以4-羟基-5-甲基香豆素和柠檬醛为原料,通过oxa-6π电环化和分子内[22]光环加成,实现了外消旋1的仿生合成。随后,生物活性测定结果表明,(+)-1a和(-)-1b在3T3-L1脂肪细胞和高脂饮食斑马鱼模型中均表现出有效的降脂作用.值得注意的是,在相同浓度下,(+)-1a的降脂活性优于(-)-1b,分子机制研究表明,()-1a和(-)-1b通过调节C/EBPα/PPARγ信号和Perilipin信号在体外和体内损害脂肪细胞分化并刺激脂肪分解。我们的发现为肥胖的治疗提供了一种有前途的药物模型分子。
    A pair of coumarin-based polycyclic meroterpenoid enantiomers (+)/(-)-gerbeloid A [(+)-1a and (-)-1b] were isolated from the medicinal plant Gerbera piloselloides, which have a unique caged oxatricyclo [4.2.2.03,8] decene scaffold. Their planar and three-dimensional structures were exhaustively characterized by comprehensive spectroscopic data and X-ray diffraction analysis. Guided by the hypothetical biosynthetic pathway, the biomimetic synthesis of racemic 1 was achieved using 4-hydroxy-5-methylcoumarin and citral as the starting material via oxa-6π electrocyclization and intramolecular [2 + 2] photocycloaddition. Subsequently, the results of the biological activity assay demonstrated that both (+)-1a and (-)-1b exhibited potent lipid-lowering effects in 3T3-L1 adipocytes and the high-fat diet zebrafish model. Notably, the lipid-lowering activity of (+)-1a is better than that of (-)-1b at the same concentration, and molecular mechanism study has shown that (+)-1a and (-)-1b impairs adipocyte differentiation and stimulate lipolysis by regulating C/EBPα/PPARγ signaling and Perilipin signaling in vitro and in vivo. Our findings provide a promising drug model molecule for the treatment of obesity.
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