Signal molecules

信号分子
  • 文章类型: Journal Article
    红景天苷抑制癌细胞增殖。然而,机制尚未完全阐明。目的探讨红景天苷抗胃癌的作用机制。分析红景天苷治疗胃癌细胞中微小RNA(miRNA)的变化,在红景天苷治疗后24小时,通过使用RNA-seq分析癌细胞中的miRNA表达.对差异表达的miRNA进行聚类,并分析其靶基因。通过q-PCR进一步验证所选择的miRNA和靶mRNA基因。免疫组化法检测目的基因在癌细胞中的表达。红景天苷治疗后癌细胞凋亡指数显著升高。胃癌细胞的增殖在S期细胞周期被阻断。红景天苷处理后,44种miRNA在癌细胞中的表达发生了差异。生物信息学分析表明,有1384个靶mRNA与差异表达的miRNA相对应。令人惊讶的是,红景天苷显著上调肿瘤抑制因子miR-1343-3p的表达,并下调MAP3K6、STAT3和MMP24相关基因的表达。红景天苷通过诱导癌细胞凋亡抑制胃癌生长,抑制癌细胞周期并下调相关的信号转导通路。miRNA在红景天苷治疗后在胃癌细胞中差异表达,在调节增殖和转移中起重要作用。红景天苷可能通过上调抑癌基因miR-1343-3p的表达和下调MAP3K6和MMP24信号分子的表达来抑制胃癌的生长。
    Salidroside inhibited the proliferation of cancer cell. Nevertheless, the mechanism has not been completely clarified. The purpose of the study is to explore the mechanisms of salidroside against gastric cancer. To analyze the changes of microRNA (miRNA) in gastric cancer cells under the treatment of salidroside, the miRNA expression was analyzed by using RNA-seq in cancer cells for 24 h after salidroside treatment. The differentially expressed miRNAs were clustered and their target genes were analyzed. Selected miRNA and target mRNA genes were further verified by q-PCR. The expressions of target genes in cancer cells were detected by immunohistochemistry. Cancer cell apoptotic index was significantly increased after salidroside treatment. The proliferation of gastric cancer cells were blocked at S-phase cell cycle. The expression of 44 miRNAs changed differentially after salidroside treatment in cancer cells. Bioinformatic analysis showed that there were 1384 target mRNAs corresponding to the differentially expressed miRNAs. Surprisingly, salidroside significantly up-regulated the expression of tumor suppressor miR-1343-3p, and down-regulated the expression of MAP3K6, STAT3 and MMP24-related genes. Salidroside suppressed the growth of gastric cancer by inducing the cancer cell apoptosis, arresting the cancer cell cycle and down-regulating the related signal transduction pathways. miRNAs are expressed differentially in gastric cancer cells after salidroside treatment, playing important roles in regulating proliferation and metastasis. Salidroside may suppress the growth of gastric cancer by up-regulating the expression of the tumor suppressor miR-1343-3p and down-regulating the expression of MAP3K6 and MMP24 signal molecules.
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  • 文章类型: Journal Article
    本研究旨在确定冷却对收缩诱导的过氧化物酶体增殖物激活受体γ辅激活因子-1α(PGC-1α)和血管内皮生长因子(VEGF)基因表达的影响。其相关蛋白激酶的磷酸化,和代谢反应。将雄性大鼠分为两组;右侧胫骨前肌(TA)的室温(RT)或冰处理(COLD)。使用神经电刺激(1-s刺激×30收缩,以1-s间隔,10组,间隔1分钟)。在收缩前和1分钟的间隔内,COLD组用冰袋和RT组用水袋处理TA。实验方案后,与RT组相比,COLD组的肌肉温度降低至19.42±0.44°C(p<0.0001,-36.4%)。PGC-1αmRNA表达水平升高,不是VEGF,在肌肉收缩后,COLD组明显低于RT组(p<0.0001,-63.0%)。冷却也显着抑制了肌肉收缩后磷酸化AMP激活激酶(AMPK)的增加(p=0.0037,-28.8%)和糖原浓度的降低(p=0.0231,106.3%)。总的来说,肌肉冷却减弱了收缩后PGC-1αmRNA表达的增加,同时AMPK磷酸化和糖原降解的减少。
    This study aimed to determine effects of cooling on contraction-induced peroxisome proliferator-activated receptor γ coactivator-1α (PGC-1α) and vascular endothelial growth factor (VEGF) gene expression, phosphorylations of its related protein kinases, and metabolic responses. Male rats were separated into two groups; room temperature (RT) or ice-treated (COLD) on the right tibialis anterior (TA). The TA was contracted isometrically using nerve electrical stimulation (1-s stimulation × 30 contractions, with 1-s intervals, for 10 sets with 1-min intervals). The TA was treated before the contraction and during 1-min intervals with an ice pack for the COLD group and a water pack at RT for the RT group. The muscle temperature of the COLD group decreased to 19.42 ± 0.44°C (p < 0.0001, -36.4%) compared with the RT group after the experimental protocol. An increase in mRNA expression level of PGC-1α, not VEGF, after muscle contractions was significantly lower in the COLD group than in the RT group (p < 0.0001, -63.0%). An increase in phosphorylated AMP-activated kinase (AMPK) (p = 0.0037, -28.8%) and a decrease in glycogen concentration (p = 0.0231, +106.3%) after muscle contraction were also significantly inhibited by cooling. Collectively, muscle cooling attenuated the post-contraction increases in PGC-1α mRNA expression coinciding with decreases in AMPK phosphorylation and glycogen degradation.
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  • 文章类型: Journal Article
    基于群体猝灭(QQ)的细菌通讯中断已被证明具有抑制生物膜形成和控制生物污染的潜力。然而,如果QQ能与环境工程中污染物的有效降解相结合,将会更加令人满意。在这项研究中,我们通过引入QQ合成基因设计了恶臭假单胞菌的生物膜,既实现了生物膜的形成抑制,又实现了废水中苯系物的高效降解。通过热休克法导入恶臭假单胞菌的aiiO基因被高表达,产生QQ酶降解基于AHL的信号分子。添加这种工程恶臭假单胞菌降低了AHLs浓度,群体感应基因表达,以及活性污泥中微生物群落网络的连接,因此抑制了生物膜的形成。同时,苯甲酸钠降解实验表明,工程菌对活性污泥的苯系物去除能力增强。此外,我们还通过监测这种工程细菌的丰度和水平基因转移测试,证明了其可控的环境风险。总的来说,这项研究的结果提出了通过基因工程手段解决多重环境问题的替代策略,并为工程细菌在环境生物技术中的应用提供了支持。
    Bacterial communication interruption based on quorum quenching (QQ) has been proven its potential in biofilm formation inhibition and biofouling control. However, it would be more satisfying if QQ could be combined with the efficient degradation of contaminants in environmental engineering. In this study, we engineered a biofilm of Pseudomonas putida through introducing a QQ synthetic gene, which achieved both biofilm formation inhibition and efficient degradation of benzene series in wastewater. The aiiO gene introduced into the P. putida by heat shock method was highly expressed to produce QQ enzyme to degrade AHL-based signal molecules. The addition of this engineered P. putida reduced the AHLs concentration, quorum sensing gene expression, and connections of the microbial community network in activated sludge and therefore inhibited the biofilm formation. Meanwhile, the sodium benzoate degradation assay indicated an enhanced benzene series removal ability of the engineering bacteria on activated sludge. Besides, we also demonstrated a controllable environmental risk of this engineered bacteria through monitoring its abundance and horizontal gene transfer test. Overall, the results of this study suggest an alternative strategy to solve multiple environmental problems through genetic engineering means and provide support for the application of engineered bacteria in environmental biotechnology.
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  • 文章类型: Journal Article
    线粒体自噬在维持线粒体功能的复杂性和清除受损线粒体中发挥着重要作用。其中PINK1-Parkin信号通路是最经典的通路之一。因此,对PINK1-Parkin信号通路的全面深入解释可能会加深我们对线粒体自噬影响的理解.阿尔茨海默病(AD)是神经退行性疾病的经典例子。由于AD的复杂性和目前药物治疗的局限性,其发病机制和治疗方法的研究一直是科学研究的热点。据报道,AD的发病机制可能与Aβ蛋白过度沉积和Tau蛋白磷酸化加剧导致的线粒体自噬有关。PINK1-Parkin信号通路中的两个关键蛋白,PINK1和Parkin,Aβ蛋白的折叠和积累以及Tau蛋白的磷酸化具有重要作用。此外,PINK1-Parkin信号通路中的中间信号分子对AD也有一定的影响。在本文中,我们首先描述了PINK1-Parkin信号通路在线粒体自噬中的作用,然后讨论并分析了PINK1-Parkin信号通路在AD等代谢性疾病中的作用。我们的目的是为进一步阐明AD的发病机制提供理论方向,并强调与AD相关的关键分子可能成为AD药物开发的重要靶标。
    Mitochondrial autophagy plays an important role in maintaining the complexity of mitochondrial functions and removing damaged mitochondria, of which the PINK1-Parkin signal pathway is one of the most classical pathways. Thus, a comprehensive and in-depth interpretation of the PINK1-Parkin signal pathway might deepen our understanding on the impacts of mitochondrial autophagy. Alzheimer\'s disease (AD) is a classical example of neurodegenerative disease. Research on the pathogenesis and treatments of AD has been a focus of scientific research because of its complexity and the limitations of current drug therapies. It was reported that the pathogenesis of AD might be related to mitochondrial autophagy due to excessive deposition of Aβ protein and aggravation of the phosphorylation of Tau protein. Two key proteins in the PINK1-Parkin signaling pathway, PINK1 and Parkin, have important roles in the folding and accumulation of Aβ protein and the phosphorylation of Tau protein. In addition, the intermediate signal molecules in the PINK1-Parkin signal pathway also have certain effects on AD. In this paper, we first described the role of PINK1-Parkin signal pathway on mitochondrial autophagy, then discussed and analyzed the effect of the PINK1-Parkin signal pathway in AD and other metabolic diseases. Our aim was to provide a theoretical direction to further elucidate the pathogenesis of AD and highlight the key molecules related to AD that could be important targets used for AD drug development.
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  • 文章类型: Journal Article
    厌氧颗粒污泥(AnGS)由于其独特的微生物层状结构,具有复杂而重要的内部微生物通讯系统。作为细菌细胞之间通过信号分子的浓度依赖性通信系统,QS(群体感应)在AnGS中广泛存在,并具有调节微生物行为的巨大潜力。因此,本文系统地总结了QS在AnGS中的通用函数,包括对代谢活动的影响,物理化学性质,和AnGS的微生物群落。随后,对常见的基于QS的AnGS监管方法进行了全面回顾和分析。从单菌和混合菌两个体系剖析了QS在AnGS中的调控机制。这篇综述可以全面了解AnGS系统中的QS功能,促进QS策略在AnGS处理工艺优化中的实际应用。
    Anaerobic granular sludge (AnGS) has a complex and important internal microbial communication system due to its unique microbial layered structure. As a concentration-dependent communication system between bacterial cells through signal molecules, QS (quorum sensing) is widespread in AnGS and exhibits great potential to regulate microbial behaviors. Therefore, the universal functions of QS in AnGS have been systematically summarized in this paper, including the influence on the metabolic activity, physicochemical properties, and microbial community of AnGS. Subsequently, the common QS-based AnGS regulation approaches are reviewed and analyzed comprehensively. The regulation mechanism of QS in AnGS is analyzed from two systems of single bacterium and mixed bacteria. This review can provide a comprehensive understanding of QS functions in AnGS systems, and promote the practical application of QS-based strategies in optimization of AnGS treatment process.
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  • 文章类型: Journal Article
    肌肉骨骼系统,由各种类型的骨骼和软骨组成,肌肉,韧带,和肌腱,是人体的基础。然而,衰老引起的许多病理状况,生活方式,疾病,或创伤可能会损害其要素,并导致严重的功能障碍和生活质量的显着恶化。由于其结构和功能,关节(透明)软骨最容易受到损伤。关节软骨是一种自我再生能力受限的非血管组织。此外,治疗方法,已证明在阻止其降解和促进再生方面的功效,仍然不存在。保守治疗和物理治疗只能缓解与软骨破坏相关的症状,和传统的外科手术干预修复缺陷或内假体并非没有严重的缺点。因此,关节软骨损伤仍然是一个紧迫和实际的问题,需要开发新的治疗方法。生物制造技术的出现,包括三维(3D)生物打印,在20世纪末,允许重建干预以获得第二次风。由于生物材料的组合,三维生物打印创建了模拟自然组织的结构和功能的体积约束,活细胞,和信号分子来创造。在我们的例子中-透明软骨。迄今为止,已经开发了几种关节软骨生物加工的方法,包括有前途的3D生物打印技术。这篇综述代表了该研究方向的主要成就,并描述了技术过程和必要的生物材料,细胞培养,和信号分子。特别注意3D生物打印的基本材料-水凝胶和生物墨水,以及所示产品的生物聚合物。
    The musculoskeletal system, consisting of bones and cartilage of various types, muscles, ligaments, and tendons, is the basis of the human body. However, many pathological conditions caused by aging, lifestyle, disease, or trauma can damage its elements and lead to severe disfunction and significant worsening in the quality of life. Due to its structure and function, articular (hyaline) cartilage is the most susceptible to damage. Articular cartilage is a non-vascular tissue with constrained self-regeneration capabilities. Additionally, treatment methods, which have proven efficacy in stopping its degradation and promoting regeneration, still do not exist. Conservative treatment and physical therapy only relieve the symptoms associated with cartilage destruction, and traditional surgical interventions to repair defects or endoprosthetics are not without serious drawbacks. Thus, articular cartilage damage remains an urgent and actual problem requiring the development of new treatment approaches. The emergence of biofabrication technologies, including three-dimensional (3D) bioprinting, at the end of the 20th century, allowed reconstructive interventions to get a second wind. Three-dimensional bioprinting creates volume constraints that mimic the structure and function of natural tissue due to the combinations of biomaterials, living cells, and signal molecules to create. In our case-hyaline cartilage. Several approaches to articular cartilage biofabrication have been developed to date, including the promising technology of 3D bioprinting. This review represents the main achievements of such research direction and describes the technological processes and the necessary biomaterials, cell cultures, and signal molecules. Special attention is given to the basic materials for 3D bioprinting-hydrogels and bioinks, as well as the biopolymers underlying the indicated products.
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  • 文章类型: Journal Article
    底灰(BA)的联合填埋加速了渗滤液收集系统(LCS)的堵塞,并增加了填埋失败的风险。堵塞主要与生物堵塞有关,这可以通过群体淬火(QQ)策略来降低。本通讯报告了有关如何从城市固体废物(MSW)垃圾填埋场和BA共同处置垃圾填埋场中分离兼性QQ细菌菌株的研究。在垃圾填埋场,两个新的QQ菌株(农业短芽孢杆菌和溶血芽孢杆菌。YS11)可以降解信号分子己酰基-1-高丝氨酸内酯(C6-HSL)和辛酰基-1-高丝氨酸内酯(C8-HSL),分别。铜绿假单胞菌可以降解BA协同处置垃圾填埋场中的C6-HSL和C8-HSL。此外,观察到铜绿假单胞菌(0.98)的生长速率(OD600)高于农业芽孢杆菌(0.27)和溶血芽孢杆菌。YS11(0.53)。这些结果表明,QQ菌株与渗滤液特性和信号分子有关,可用于控制垃圾填埋场的生物堵塞。
    Co-landfilling of bottom ash (BA) accelerates the clogging of leachate collection systems (LCSs) and increases the risk of landfill failure. The clogging was mainly associated with bio-clogging, which may be reduced by quorum quenching (QQ) strategies. This communication reports on a study of how isolated facultative QQ bacterial strains from municipal solid waste (MSW) landfills and BA co-disposal landfills. In MSW landfills, two novel QQ strains (Brevibacillus agri and Lysinibacillus sp. YS11) can degrade the signal molecule hexanoyl-l-homoserine lactone (C6-HSL) and octanoyl-l-homoserine lactone (C8-HSL), respectively. Pseudomonas aeruginosa could degrade C6-HSL and C8-HSL in BA co-disposal landfills. Moreover, P. aeruginosa (0.98) was observed with a higher growth rate (OD600) compared to that of B. agri (0.27) and Lysinibacillus sp. YS11 (0.53). These results indicated that the QQ bacterial strains were associated with leachate characteristics and signal molecules and could be used for controlling bio-clogging in landfills.
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  • 文章类型: Journal Article
    水杨酸(SA)是潜在的植物生长调节剂(PGRs)之一,通过触发许多生理和代谢过程来调节植物的生长和发育。它也被认为是针对环境刺激的植物防御机制的关键组成部分。在紧张的植物中,据记载,它可以有效地调节无数的代谢过程,包括通过直接或间接限制反应性氮和氧自由基的积累来加强氧化防御系统。尽管众所周知,它在植物对各种胁迫的耐受性中起着至关重要的作用,还没有完全阐明低浓度或高浓度的这种PGR是否有效地在应激环境下实现植物的最佳生长。还没有完全理解它与植物体内的其他潜在生长调节剂和信号分子交叉对话到什么程度和以什么方式。因此,这篇关键综述讨论了SA在多大程度上介导与其他关键PGRs和信号通路机制的分子组分的串扰,特别是在暴露于环境线索的植物中。此外,明确阐明了外源应用于非生物胁迫下植物生长发育调节以及增强氧化防御系统的功能。
    Salicylic acid (SA) is one of the potential plant growth regulators (PGRs) that regulate plant growth and development by triggering many physiological and metabolic processes. It is also known to be a crucial component of plant defense mechanisms against environmental stimuli. In stressed plants, it is documented that it can effectively modulate a myriad of metabolic processes including strengthening of oxidative defense system by directly or indirectly limiting the buildup of reactive nitrogen and oxygen radicals. Although it is well recognized that it performs a crucial role in plant tolerance to various stresses, it is not fully elucidated that whether low or high concentrations of this PGR is effective to achieve optimal growth of plants under stressful environments. It is also not fully understood that to what extent and in what manner it cross-talks with other potential growth regulators and signalling molecules within the plant body. Thus, this critical review discusses how far SA mediates crosstalk with other key PGRs and molecular components of signalling pathways mechanisms, particularly in plants exposed to environmental cues. Moreover, the function of SA exogenously applied in regulation of growth and development as well as reinforcement of oxidative defense system of plants under abiotic stresses is explicitly elucidated.
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  • 文章类型: Review
    Due to the impacts of refractory organic pollutants and environment on the water treatment system, the sewage quality can not reach the standard. It is an effective measure to improve the efficiency of wastewater treatment by introducing exogenous engineering strains with relevant functional genes and the ability of horizontal gene transfer. In sewage treatment system, there are bacteria secreting signal molecules with quorum sensing. When population density reaches induction threshold, the bacteria would activate the related genes expression (such as biofilm formation, bioluminescent, antibiotics synthesis and virulence factor expression, etc.) through releasing signaling molecules, and thus trigger the behavior of other groups. Previously, researches about quorum sensing mainly concentrated on signal transduction, microbial social behavior, and medical microbiology. In recent years, stu-dies found that quorum sensing plays an important role in wastewater biological treatment and affects the colonization of the microorganism strain and pollutants degradation. Therefore, the regulation of quorum-sensing behavior is the key factor in the bioaugmentation performance. Here, we review the signaling molecules mechanism, the release of signaling molecules and its influence factors, the colonization of microbial community and the removal of pollutants. We further discussed the research from the perspective of quorum sensing biological process. The aim was to provide new idea for the effective implementation of bioaugmentation technology and the improvement of wastewater treatment efficiency, and to provide a theoretical reference for the in-depth understanding of quorum sensing regulation behavior in the process of bioaugmentation.
    由于难降解有机污染物和外界环境对水处理系统的冲击干扰,污水水质常出现不达标现象。引入外源含有相关功能基因并且具有基因水平转移能力的工程菌株进行生物强化处理是提高污水处理效能的有效措施。污水处理系统中存在能够分泌信号分子的菌体,菌间具有群体感应现象,当种群密度达到感应阈值时,菌体会通过释放信号分子来触发一些群体行为,从而激活相关基因的表达(如生物膜形成、生物发光、抗生素合成和毒力因子表达等)。早期的群体感应技术研究主要集中在信号传递学、微生物社会行为学和医学微生物领域,近年来,在水处理领域也开始有相继报道,研究表明群体感应在污水生物处理中发挥重要作用,并且影响生物强化菌株的定殖和污染物降解,因此群体感应行为调控是生物强化技术成效显著与否的关键因素。本文综述了群体感应及信号分子的作用机制、信号分子释放及存在的影响因素以及群体感应对菌株定殖、微生物群落结构和污染物去除的影响,并对从群体感应角度出发研究生物强化过程进行了展望,旨在为生物强化技术的有效实施及提升污水处理效能提供一种新思路,为深入理解生物强化过程中群体感应调控行为提供理论参考。.
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  • 文章类型: Journal Article
    磷处理可以降低Cd在水稻中的积累和Cd的毒害,但是在这个过程中,水稻内部监管网络的变化很少被报道。我们已经从水培系统中消除了磷酸镉沉淀的影响,用不同水平的磷和镉处理了一对不同的Cd响应水稻品种,并检查了生理指标和调节网络的变化。结果表明,磷处理显著降低了两种水稻的Cd积累,尽管这两种水稻中的抗氧化系统产生了相反的反应。总的来说,3mM磷处理Cd-N使OsIAA17和OsACO1的表达降低了32%和37%,分别,同时使OsNR2的表达量增加83%;这三个基因调控生长素的合成,乙烯,和大米中的一氧化氮。水稻芽中的IAA和NO水平分别增加了24%和96%,分别,这些变化有助于Cd解毒。三磷处理后Cd-N根中镉转运蛋白基因OsHMA2、OsIRT1和OsABCC1显著下调。这些数据表明,磷处理可以通过影响信号分子的表达来减少水稻的Cd积累并增强对Cd的抗性。
    Phosphorus treatment can reduce Cd accumulation and Cd toxicity in rice, but alterations in the internal regulatory network of rice during this process have rarely been reported. We have removed the effect of cadmium phosphate precipitation from the hydroponic system, treated a pair of different Cd-response rice varieties with different levels of phosphorus and cadmium and examined the changes in physiological indicators and regulatory networks. The results demonstrated that phosphorus treatment significantly reduced Cd accumulation in both types of rice, although the antioxidant systems within the two types of rice produced opposite responses. Overall, 3 mM phosphorus treatment to Cd-N decreased the expression of OsIAA17 and OsACO1 by 32% and 37%, respectively, while increasing the expression of OsNR2 by 83%; these three genes regulate the synthesis of auxin, ethylene, and nitric oxide in rice. IAA and NO levels in rice shoots increased by 24% and 96%, respectively, and these changes contribute to Cd detoxification. The cadmium transporter genes OsHMA2, OsIRT1, and OsABCC1 were significantly down-regulated in Cd-N roots after triple phosphorus treatment. These data suggest that phosphorus treatment can reduce Cd accumulation and enhance Cd resistance in rice by affecting the expression of signaling molecules.
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