Respirovirus Infections

呼吸道病毒感染
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    文章类型: Journal Article
    UNASSIGNED: This study compared clinical and immunological responses to coinfection challenge of beef calves mucosally primed and differentially boosted with commercial combination vaccines containing antigens against bovine coronavirus (BCoV), bovine parainfluenza virus Type 3 (BPIV3), and bovine respiratory syncytial virus (BRSV).
    UNASSIGNED: Nineteen commercial beef heifers.
    UNASSIGNED: At birth, calves were mucosally (IN) primed with modified-live virus (MLV) vaccines, differentially boosted by injection of either combination MLV (IN-MLV) or inactivated virus (IN-KV) vaccines at a mean age of 44 d, and then challenged by coinfection with BCoV, BPIV3, and BRSV at weaning.
    UNASSIGNED: Both groups were similarly protected from clinical disease and had anamnestic neutralizing antibody responses to all 3 viruses. The IN-KV group shed more BCoV, and less BPIV3 and BRSV, than the IN-MLV group.
    UNASSIGNED: These data indicated similar clinical and immunological protection between IN-MLV and IN-KV; however, shed of virus varied.
    UNASSIGNED: Whereas boosting with KV or MLV appeared to have similar efficacy, viral shed differences may affect disease control.
    Efficacité comparative des vaccins vivants modifiés et inactivés pour stimuler les réponses au virus respiratoire syncytial bovin, au virus parainfluenza bovin de type 3 et au coronavirus bovin après amorçage via la muqueuse de veaux de boucherie nouveau-nés.
    UNASSIGNED: Cette étude a comparé les réponses cliniques et immunologiques à une co-infection de veaux de boucherie amorcés par voie muqueuse et différentiellement stimulés avec des vaccins combinés commerciaux contenant des antigènes contre le coronavirus bovin (BCoV), le virus parainfluenza bovin de type 3 (BPIV3) et le virus respiratoire syncytial bovin (BRSV).
    UNASSIGNED: Dix-neuf génisses de boucherie commerciales.
    UNASSIGNED: À la naissance, les veaux ont été vaccinés au niveau des muqueuses (IN) avec des vaccins à virus vivants modifiés (MLV), stimulés de manière différentielle par l’injection de vaccins combinés MLV (IN-MLV) ou de virus inactivés (IN-KV) à un âge moyen de 44 jours. puis provoqué par une co-infection avec BCoV, BPIV3 et BRSV au sevrage.
    UNASSIGNED: Les deux groupes étaient protégés de la même manière contre la maladie clinique et présentaient des réponses anamnestiques en anticorps neutralisants contre les 3 virus. Le groupe IN-KV a excrété plus de BCoV et moins de BPIV3 et de BRSV que le groupe IN-MLV.
    UNASSIGNED: Ces données indiquent une protection clinique et immunologique similaire entre IN-MLV et IN-KV; cependant, l’excrétion du virus variait.
    UNASSIGNED: Alors que le rappel avec KV ou MLV semble avoir une efficacité similaire, les différences d’excrétion virale peuvent affecter la limitation de la maladie.(Traduit par Dr Serge Messier).
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  • 文章类型: Journal Article
    背景:自COVID-19爆发以来,中国采取了多种预防和控制措施,有效降低了杭州市儿科人群中多种传染病的发病率。我们旨在调查在此期间儿科患者中人类副流感病毒3(HPIV-3)的遗传和流行病学特征。
    方法:从2020年11月至2021年3月的门诊和住院患者中收集了1442例咽拭子样本,诊断为急性呼吸道感染(ARTI)。通过定量实时聚合酶链反应(qRT-PCR)检测HPIV-3。对HPIV-3阳性样品的L基因进行扩增和测序。
    结果:在1442名患有ARTI的儿童中,HPIV-3阳性率为7.07%(102/1442)。6个月至1岁年龄组的阳性检出率最高。在36例HPIV-3阳性样本中观察到共感染(35.29%,36/102),腺病毒(ADV)是最常见的共感染病毒(63.89%,23/36)。对48份HPIV-3阳性样品的L基因进行测序。核苷酸序列分析具有较高的一致性(92.10%-99.40%),所有菌株都属于C3a。
    结论:在研究期间,儿童HPIV-3阳性检出率高,在HPIV-3混合ADV感染中,合并感染的比例最高。系统发育分析显示HPIV-3的L基因的核苷酸序列高度一致,该地区的主要流行菌株是C3a亚型。
    BACKGROUND: Since the outbreak of COVID-19, China has undertaken a variety of preventative and control measures, effectively reducing the incidence of numerous infectious diseases among the pediatric population in Hangzhou. We aim to investigate the genetic and epidemiological characteristics of Human parainfluenza virus-3 (HPIV-3) in pediatric patients during this period.
    METHODS: A total of 1442 pharyngeal swab samples were collected from outpatients and inpatients with a diagnosis of acute respiratory tract infections (ARTIs) from November 2020 to March 2021. HPIV-3 was detected by quantitative real time polymerase chain reaction (qRT-PCR). The L gene of HPIV-3 positive samples was amplified and sequenced.
    RESULTS: Among 1442 children with ARTI, the positive rate of HPIV-3 was 7.07% (102/1442). The positive detection rate was the highest in the 6-month to 1-year age group. Coinfection was observed in 36 HPIV-3-positive samples (35.29%, 36/102), and adenovirus (ADV) was the most common coinfecting virus (63.89%, 23/36). The L gene of 48 HPIV-3 positive samples was sequenced. The nucleotide sequence analysis showed high consistency (92.10%-99.40%), and all strains belonged to C3a.
    CONCLUSIONS: During study periods, the positive detection rate of HPIV-3 among children is high, and the highest proportion of coinfection was observed in HPIV-3 mixed ADV infection. Phylogenetic analysis revealed that the nucleotide sequence of the L gene of HPIV-3 was highly consistent, and the main epidemic strain in this area was the C3a subtype.
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  • 文章类型: Journal Article
    呼吸系统疾病是反刍动物的主要健康问题,在全世界造成了巨大的经济损失。副流感病毒3型(PIV3)是反刍动物最重要的呼吸道病原体之一。已经报道了绵羊和山羊中PIV3病毒的致病性和系统发育分析。然而,最近没有关于绵羊或山羊针对PIV3的疫苗接种的研究。这里,我们开发了纯化的灭活绵羊副流感病毒3型(OPIV3)候选疫苗.此外,我们用OPIV3灭活疫苗免疫绵羊,并评估与OPIV3TX01感染相关的免疫应答和病理结果.接种疫苗的绵羊没有明显的呼吸道感染症状,肺部无明显病变或病理变化。平均体重增加在接种组和对照组之间有显著差异(P<0.01)。在接种疫苗后和用OPIV3攻击后,绵羊的血清中和抗体水平迅速增加。此外,鼻拭子中的病毒脱落和肺中的病毒载量减少。这项研究的结果表明,用这种候选疫苗接种会诱导中和抗体的产生,并提供针对OPIV3感染的显着保护。这些结果可能有助于进一步研究OPIV3感染的预防和控制策略。
    Respiratory diseases constitute a major health problem for ruminants, resulting in considerable economic losses throughout the world. Parainfluenza type 3 virus (PIV3) is one of the most important respiratory pathogens of ruminants. The pathogenicity and phylogenetic analyses of PIV3 virus have been reported in sheep and goats. However, there are no recent studies of the vaccination of sheep or goats against PIV3. Here, we developed a purified inactivated ovine parainfluenza virus type 3 (OPIV3) vaccine candidate. In addition, we immunized sheep with the inactivated OPIV3 vaccine and evaluated the immune response and pathological outcomes associated with OPIV3 TX01 infection. The vaccinated sheep demonstrated no obvious symptoms of respiratory tract infection, and there were no gross lesions or pathological changes in the lungs. The average body weight gain significantly differed between the vaccinated group and the control group (P < 0.01). The serum neutralization antibody levels rapidly increased in sheep post-vaccination and post-challenge with OPIV3. Furthermore, viral shedding in nasal swabs and viral loads in the lungs were reduced. The results of this study suggest that vaccination with this candidate vaccine induces the production of neutralizing antibodies and provides significant protection against OPIV3 infection. These results may be helpful for further studies on prevention and control strategies for OPIV3 infections.
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  • 文章类型: Journal Article
    病毒的感染性取决于多种因素。最近的研究表明,病毒RNA和内源性microRNA(miRNA)之间的相互作用调节病毒的感染性;病毒RNA作为内源性miRNA的海绵,并导致其原始靶基因的上调,而内源性miRNA直接靶向病毒RNA并导致病毒基因表达的抑制。在这项研究中,我们分析了副流感病毒RNA与人和小鼠肺中内源性miRNAs之间可能的相互作用.我们表明副流感病毒可以与人miRNA形成比小鼠miRNA丰富的碱基对。此外,我们分析了内源性miRNAs对病毒RNAs的海绵效应可能诱导转录调控因子的上调。然后,我们进行了RNA序列分析,观察了副流感病毒感染早期转录调节因子的上调.我们的研究表明,内源性miRNAs在肺中的差异表达如何导致呼吸道病毒感染,物种或组织特异性机制和共同机制在人类和小鼠中可以被保留,并在病毒感染期间由miRNAs调节。
    Viral infectivity depends on multiple factors. Recent studies showed that the interaction between viral RNAs and endogenous microRNAs (miRNAs) regulates viral infectivity; viral RNAs function as a sponge of endogenous miRNAs and result in upregulation of its original target genes, while endogenous miRNAs target viral RNAs directly and result in repression of viral gene expression. In this study, we analyzed the possible interaction between parainfluenza virus RNA and endogenous miRNAs in human and mouse lungs. We showed that the parainfluenza virus can form base pairs with human miRNAs abundantly than mouse miRNAs. Furthermore, we analyzed that the sponge effect of endogenous miRNAs on viral RNAs may induce the upregulation of transcription regulatory factors. Then, we performed RNA-sequence analysis and observed the upregulation of transcription regulatory factors in the early stages of parainfluenza virus infection. Our studies showed how the differential expression of endogenous miRNAs in lungs could contribute to respiratory virus infection and species- or tissue-specific mechanisms and common mechanisms could be conserved in humans and mice and regulated by miRNAs during viral infection.
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  • 文章类型: Journal Article
    人类副流感病毒3型(HPIV3)是一种主要的儿科呼吸道病原体,缺乏可用的疫苗或抗病毒药物。我们通过密码子对去优化(CPD)产生了活的减毒HPIV3疫苗候选物。HPIV3开放阅读框(ORFs)编码核蛋白(N),磷蛋白(P),矩阵(M),融合(F),血凝素-神经氨酸酶(HN),和聚合酶(L)被单独或组合修饰以产生12种病毒,命名为Min-N,Min-P,Min-M,Min-FHN,Min-L,Min-NP,Min-NPM,最小不良贷款,Min-PM,Min-PFHN,Min-MFHN,和Min-PMFHN。N或L的CPD严重降低了体外生长,没有进一步评估。P或M的CPD与体外干扰素(IFN)反应增加和减少有关,分别,但对病毒复制影响不大。在Vero细胞中,F和HN延迟病毒复制的CPD,但最终滴度与野生型(wt)HPIV3相当。在人肺上皮A549细胞中,CPDF和HN诱导更强的IFN应答,病毒滴度降低了100倍,F和HN蛋白的表达显着降低,而不影响N或P或蛋白质在病毒体中的相对包装。仓鼠鼻内感染后,对于携带CPDF和HN的病毒,鼻甲和肺中的复制倾向于减少最多,最大减少约10倍。尽管体内复制减少(体外CPDF和HN的表达降低),所有病毒均诱导与wt相似的血清HPIV3中和抗体滴度,并提供针对HPIV3攻击的完全保护。总之,HPIV3的CPD产生了适合进一步开发的有希望的疫苗候选物。
    Human parainfluenza virus type 3 (HPIV3) is a major pediatric respiratory pathogen lacking available vaccines or antiviral drugs. We generated live-attenuated HPIV3 vaccine candidates by codon-pair deoptimization (CPD). HPIV3 open reading frames (ORFs) encoding the nucleoprotein (N), phosphoprotein (P), matrix (M), fusion (F), hemagglutinin-neuraminidase (HN), and polymerase (L) were modified singly or in combination to generate 12 viruses designated Min-N, Min-P, Min-M, Min-FHN, Min-L, Min-NP, Min-NPM, Min-NPL, Min-PM, Min-PFHN, Min-MFHN, and Min-PMFHN. CPD of N or L severely reduced growth in vitro and was not further evaluated. CPD of P or M was associated with increased and decreased interferon (IFN) response in vitro, respectively, but had little effect on virus replication. In Vero cells, CPD of F and HN delayed virus replication, but final titers were comparable to wild-type (wt) HPIV3. In human lung epithelial A549 cells, CPD F and HN induced a stronger IFN response, viral titers were reduced 100-fold, and the expression of F and HN proteins was significantly reduced without affecting N or P or the relative packaging of proteins into virions. Following intranasal infection in hamsters, replication in the nasal turbinates and lungs tended to be the most reduced for viruses bearing CPD F and HN, with maximum reductions of approximately 10-fold. Despite decreased in vivo replication (and lower expression of CPD F and HN in vitro), all viruses induced titers of serum HPIV3-neutralizing antibodies similar to wt and provided complete protection against HPIV3 challenge. In summary, CPD of HPIV3 yielded promising vaccine candidates suitable for further development.
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  • 文章类型: Journal Article
    人类副流感病毒3型(hPIV3)是一种呼吸道病原体,可在老年人和婴儿中引起严重疾病。目前,针对hPIV3的疫苗正在临床试验中,但尚未获得批准。hPIV3的血凝素-神经氨酸酶(HN)和融合(F)表面糖蛋白是主要的抗原决定簇。在这里,我们描述了天然存在的针对hPIV3两种表面糖蛋白的有效中和人抗体。我们从人记忆B细胞中分离出7种中和性HN反应性抗体和融合前构象F反应性抗体。一种结合HN的单克隆抗体(mAb),命名为PIV3-23,表现出包括血凝和神经氨酸酶抑制的功能属性。我们还描述了两种HN和一种FmAb的中和的结构基础。在hPIV3感染的棉鼠模型中,体外中和hPIV3的MAb在体内保护免受感染和疾病,提示hPIV3的保护和这些单克隆抗体的潜在临床效用的相关性。
    Human parainfluenza virus type 3 (hPIV3) is a respiratory pathogen that can cause severe disease in older people and infants. Currently, vaccines against hPIV3 are in clinical trials but none have been approved yet. The haemagglutinin-neuraminidase (HN) and fusion (F) surface glycoproteins of hPIV3 are major antigenic determinants. Here we describe naturally occurring potently neutralizing human antibodies directed against both surface glycoproteins of hPIV3. We isolated seven neutralizing HN-reactive antibodies and a pre-fusion conformation F-reactive antibody from human memory B cells. One HN-binding monoclonal antibody (mAb), designated PIV3-23, exhibited functional attributes including haemagglutination and neuraminidase inhibition. We also delineated the structural basis of neutralization for two HN and one F mAbs. MAbs that neutralized hPIV3 in vitro protected against infection and disease in vivo in a cotton rat model of hPIV3 infection, suggesting correlates of protection for hPIV3 and the potential clinical utility of these mAbs.
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  • 文章类型: Journal Article
    尚不清楚BPIV3感染是否导致应激颗粒形成,以及G3BP1是否在此过程和病毒复制中起作用。本研究旨在阐明BPIV3与应激颗粒之间的关联,探讨G3BP1对BPIV3复制的影响,并对BPIV3逃避宿主抗病毒免疫以支持其自身生存的机制提供了重要见解。
    这里,我们用免疫荧光染色观察BPIV3感染对应激颗粒组装的影响。同时,测定eIF2α和G3BP1的表达变化。检测细胞内G3BP1水平的过表达或siRNA沉默对BPIV3复制的调节控制。
    我们确定BPIV3感染引起eIF2α蛋白的磷酸化。然而,它没有诱导应力颗粒的组装;相反,它抑制了胁迫颗粒的形成并下调了G3BP1的表达。G3BP1过表达促进细胞内应激颗粒的形成并阻碍病毒复制,而G3BP1敲低增强了BPIV3的表达。
    这项研究表明,G3BP1在BPIV3抑制应激颗粒形成和病毒复制中起着至关重要的作用。
    UNASSIGNED: It remains unclear whether BPIV3 infection leads to stress granules formation and whether G3BP1 plays a role in this process and in viral replication. This study aims to clarify the association between BPIV3 and stress granules, explore the effect of G3BP1 on BPIV3 replication, and provide significant insights into the mechanisms by which BPIV3 evades the host\'s antiviral immunity to support its own survival.
    UNASSIGNED: Here, we use Immunofluorescence staining to observe the effect of BPIV3 infection on the assembly of stress granules. Meanwhile, the expression changes of eIF2α and G3BP1 were determined. Overexpression or siRNA silencing of intracellular G3BP1 levels was examined for its regulatory control of BPIV3 replication.
    UNASSIGNED: We identify that the BPIV3 infection elicited phosphorylation of the eIF2α protein. However, it did not induce the assembly of stress granules; rather, it inhibited the formation of stress granules and downregulated the expression of G3BP1. G3BP1 overexpression facilitated the formation of stress granules within cells and hindered viral replication, while G3BP1 knockdown enhanced BPIV3 expression.
    UNASSIGNED: This study suggest that G3BP1 plays a crucial role in BPIV3 suppressing stress granule formation and viral replication.
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  • 文章类型: Journal Article
    目的:血液病患者中3型副流感病毒(PIV3)的爆发与高发病率和高死亡率相关。迅速实施感染预防(IP)措施已被证明是控制该患者人群中PIV3暴发的最有效方法。最合适的IP措施可能因病毒传播模式而异,在大多数疫情中仍未被确认。我们描述了血液学患者中PIV3爆发的分子流行病学,以及一种新方法的开发,该方法可以区分爆发和社区菌株,从中可以推断出一次封闭的疫情。
    方法:使用多重PCR对患者进行呼吸道病毒筛查。循环阈值(Ct)值<31的PIV3阳性样品通过血凝素-神经氨酸酶(HN)基因的内部开发的序列分析进行回顾性表征。
    结果:在2022年7月至9月之间,31名血液病患者被确定为PIV3。尽管实施了感染控制措施,疫情持续了9周。对来自27例患者的27株PIV3菌株的HN基因进行测序显示,所有爆发菌株都与对照菌株形成了一个不同的簇,暗示了医院内的传播途径.
    结论:在爆发环境中对PIV3菌株的HN基因进行测序可以将爆发菌株与社区菌株区分开来。PIV3菌株在爆发期间的早期分子表征可以作为确定潜在传播途径的工具。这个,反过来,能够快速实施有针对性的感染预防措施,目标是最大限度地减少疫情的持续时间,并降低相关的发病率和死亡率。
    OBJECTIVE: Parainfluenza virus type 3 (PIV3) outbreaks among hematology patients are associated with high morbidity and mortality. Prompt implementation of infection prevention (IP) measures has proven to be the most efficacious approach for controlling PIV3 outbreaks within this patient population. The most suitable IP measures can vary depending on the mode of virus transmission, which remains unidentified in most outbreaks. We describe the molecular epidemiology of an outbreak of PIV3 among hematology patients and the development of a new method that allows for the differentiation of outbreak and community strains, from which a closed outbreak could be inferred.
    METHODS: Patients were screened for respiratory viruses using multiplex-PCR. PIV3 positive samples with a cycle threshold (Ct)-value of <31 underwent a retrospective characterization via an in-house developed sequence analysis of the hemagglutinin-neuraminidase (HN) gene.
    RESULTS: Between July and September 2022, 31 hematology patients were identified with PIV3. Although infection control measures were implemented, the outbreak persisted for nine weeks. Sequencing the HN gene of 27 PIV3 strains from 27 patients revealed that all outbreak strains formed a distinct cluster separate from the control strains, suggestive of a nosocomial transmission route.
    CONCLUSIONS: Sequencing the HN gene of PIV3 strains in an outbreak setting enables outbreak strains to be distinguished from community strains. Early molecular characterization of PIV3 strains during an outbreak can serve as a tool in determining potential transmission routes. This, in turn, enables rapid implementation of targeted infection prevention measures, with the goal of minimizing the outbreak\'s duration and reducing associated morbidity and mortality.
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  • 文章类型: Journal Article
    干扰素(IFN)调节因子(IRF)是细胞抗病毒反应中的关键转录因子。IRF7,一种病毒诱导的IRF,主要在骨髓细胞中表达,是IFNα和抗病毒基因的转录诱导所必需的。IRF7被病毒诱导的细胞质磷酸化激活,导致其易位到细胞核进行转录活性。这里,我们发现IRF7的非转录活性有助于其抗病毒功能。IRF7与促炎转录因子NF-κB-p65相互作用并抑制炎症靶基因的诱导。使用击倒,击倒,和过度表达策略,我们证明IRF7抑制NF-κB依赖性炎症靶基因,由病毒感染或Toll样受体(TLR)刺激诱导。突变IRF7,转录活性缺陷,与NF-κB-p65相互作用并抑制NF-κB诱导的基因表达。单动IRF7突变体,抗炎功能活跃,但是转录活性有缺陷,有效抑制仙台病毒和鼠肝炎病毒的复制。我们,因此,揭示了IRF7的抗炎功能,与转录活性无关,有助于IRF7的抗病毒反应。
    Interferon (IFN) regulatory factors (IRF) are key transcription factors in cellular antiviral responses. IRF7, a virus-inducible IRF, expressed primarily in myeloid cells, is required for transcriptional induction of interferon α and antiviral genes. IRF7 is activated by virus-induced phosphorylation in the cytoplasm, leading to its translocation to the nucleus for transcriptional activity. Here, we revealed a nontranscriptional activity of IRF7 contributing to its antiviral functions. IRF7 interacted with the pro-inflammatory transcription factor NF-κB-p65 and inhibited the induction of inflammatory target genes. Using knockdown, knockout, and overexpression strategies, we demonstrated that IRF7 inhibited NF-κB-dependent inflammatory target genes, induced by virus infection or toll-like receptor stimulation. A mutant IRF7, defective in transcriptional activity, interacted with NF-κB-p65 and suppressed NF-κB-induced gene expression. A single-action IRF7 mutant, active in anti-inflammatory function, but defective in transcriptional activity, efficiently suppressed Sendai virus and murine hepatitis virus replication. We, therefore, uncovered an anti-inflammatory function for IRF7, independent of transcriptional activity, contributing to the antiviral response of IRF7.
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  • 文章类型: Journal Article
    在2019年冠状病毒病(COVID-19)大流行期间,3型副流感病毒(PIV-3)的爆发由于感染控制措施而减少。然而,最近观察到PIV-3在大流行后再次出现。尽管如此,病毒遗传流行病学的作用,可能受到遗传瓶颈效应的影响,仍未探索。我们调查了过去65年公开提供的PIV-3全基因组和血凝素-神经氨酸酶(HN)基因序列的系统发育结构,包括COVID-19大流行。使用搜索词“人类呼吸病毒3”从国家生物技术信息中心的核苷酸数据库中检索序列。“涵盖PIV-3或HN基因的所有六个基因的序列子集被指定为全基因组和HN监测数据集,分别。使用这些数据集,我们构建了最大似然系统发育树,并使用贝叶斯SkyGrid合并先验进行了时间尺度分析。共提取455个全基因组和1139个HN基因序列,揭示了10个和11个不同的谱系,分别,在谱系分配中具有>98%的一致性。在2020年COVID-19大流行期间,在日本只发现了三个单谱系簇,韩国,和美国。PIV-3的推断起源年份对于全基因组数据集是1938年(1903-1963年),对于HN基因数据集是1955年(1930-1963年)。我们的研究表明,后COVID时代的PIV-3流行病可能受到大流行驱动的瓶颈现象的影响,并支持先前的假设,表明PIV-3起源于20世纪上半叶。重要的是使用公开的3型副流感病毒(PIV-3)全基因组序列,我们估计PIV-3起源于1930年代,与以前的假设一致。谱系分型和时间尺度系统发育分析显示,在2019年冠状病毒病大流行期间,PIV-3在韩国和美国经历了瓶颈现象。当全基因组分析有限时,我们在PIV-3的长期流行病学研究中确定了保守的血凝素-神经氨酸酶基因作为可行的替代标记。
    During the coronavirus disease 2019 (COVID-19) pandemic, outbreaks of parainfluenza virus type 3 (PIV-3) decreased due to infection control measures. However, a post-pandemic resurgence of PIV-3 has recently been observed. Nonetheless, the role of viral genetic epidemiology, possibly influenced by a genetic bottleneck effect, remains unexplored. We investigated the phylogenetic structure of the publicly available PIV-3 whole-genome and hemagglutinin-neuraminidase (HN) gene sequences spanning the last 65 years, including the COVID-19 pandemic. Sequences were retrieved from the nucleotide database of the National Center for Biotechnology Information using the search term \"Human respirovirus 3.\" Sequence subsets covering all six genes of PIV-3 or the HN gene were designated as the whole-genome and HN surveillance data sets, respectively. Using these data sets, we constructed maximum-likelihood phylogenetic trees and performed a time-scaled analysis using a Bayesian SkyGrid coalescent prior. A total of 455 whole-genome and 1,139 HN gene sequences were extracted, revealing 10 and 11 distinct lineages, respectively, with >98% concurrence in lineage assignments. During the 2020 COVID-19 pandemic, only three single-lineage clusters were identified in Japan, Korea, and the USA. The inferred year of origin for PIV-3 was 1938 (1903-1963) for the whole-genome data set and 1955 (1930-1963) for the HN gene data set. Our study suggests that PIV-3 epidemics in the post-COVID era are likely influenced by a pandemic-driven bottleneck phenomenon and supports previous hypotheses suggesting s that PIV-3 originated during the early half of the 20th century.IMPORTANCEUsing publicly available parainfluenza virus type 3 (PIV-3) whole-genome sequences, we estimated that PIV-3 originated during the 1930s, consistent with previous hypotheses. Lineage typing and time-scaled phylogenetic analysis revealed that PIV-3 experienced a bottleneck phenomenon in Korea and the USA during the coronavirus disease 2019 pandemic. We identified the conservative hemagglutinin-neuraminidase gene as a viable alternative marker in long-term epidemiological studies of PIV-3 when whole-genome analysis is limited.
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