RNA Recognition Motif Proteins

RNA 识别基序蛋白
  • 文章类型: Journal Article
    短期暴露于有害化学物质引起的急性应激可诱导RNA结合蛋白(RBP)在细胞质中的聚集和应激颗粒(SGs)的形成。细胞质RBP,RasGTP酶激活蛋白结合蛋白1(G3BP1)是SG的关键组织者,它的聚集被认为是细胞应激的标志。然而,SG的组装是一个高度动态的过程,涉及RBP;因此,基于固定过程或RBP过表达的现有方法在检测应激条件下SG的组装方面表现出有限的功效。在这项研究中,我们在人神经母细胞瘤细胞系中建立了G3BP1-绿色荧光蛋白(GFP)报告蛋白以克服这些限制。通过同源重组将GFP引入G3BP1基因组序列以产生G3BP1-GFP融合蛋白并进一步分析聚集过程。我们使用G3BP1-GFP报告系统在应激条件下验证了SG的组装。此外,该系统支持在已建立的人神经母细胞瘤细胞系中评估双酚A诱导的SG反应.总之,已建立的G3BP1-GFP报告系统使我们能够实时监测人类神经母细胞瘤细胞系中SG复合物的组装,并且可以作为评估与短期暴露于化学物质相关的潜在神经毒性的有效工具.
    Acute stress caused by short-term exposure to deleterious chemicals can induce the aggregation of RNA-binding proteins (RBPs) in the cytosol and the formation of stress granules (SGs). The cytoplasmic RBP, Ras GTPase-activating protein-binding protein 1 (G3BP1) is a critical organizer of SG, and its aggregation is considered a hallmark of cellular stress. However, assembly of SG is a highly dynamic process that involves RBPs; hence, existing methods based on fixation processes or overexpression of RBPs exhibit limited efficacy in detecting the assembly of SG under stress conditions. In this study, we established a G3BP1- Green fluorescent protein (GFP) reporter protein in a human neuroblastoma cell line to overcome these limitations. GFP was introduced into the G3BP1 genomic sequence via homologous recombination to generate a G3BP1-GFP fusion protein and further analyze the aggregation processes. We validated the assembly of SG under stress conditions using the G3BP1-GFP reporter system. Additionally, this system supported the evaluation of bisphenol A-induced SG response in the established human neuroblastoma cell line. In conclusion, the established G3BP1-GFP reporter system enables us to monitor the assembly of the SG complex in a human neuroblastoma cell line in real time and can serve as an efficient tool for assessing potential neurotoxicity associated with short-term exposure to chemicals.
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  • 文章类型: Journal Article
    在植物中,核苷酸结合位点和富含亮氨酸的重复蛋白(NLR)在效应子触发免疫(ETI)中起关键作用。然而,NLR介导的抗病潜在的确切机制仍然难以捉摸.先前的研究表明,NLR基因对Pik-H4通过与转录因子OsBIHD1相互作用而赋予稻瘟病抗性,从而导致激素途径的上调。在本研究中,我们鉴定了RNA识别基序(RRM)蛋白,OsRRM2,在囊泡和叶绿体中与Pik1-H4和Pik2-H4相互作用。OsRRM2通过上调抗性基因和与叶绿体免疫相关的基因对Pik-H4介导的水稻稻瘟病抗性表现出适度的影响。此外,通过指数富集使用配体的系统进化来阐明OsRRM2的RNA结合序列。转录组分析进一步表明OsRRM2促进叶绿体基因ndhB的RNA编辑。总的来说,我们的发现揭示了一种促进NLR基因对易位并调节叶绿体免疫的叶绿体RRM蛋白,从而弥合ETI和叶绿体免疫之间的差距。
    In plants, nucleotide-binding site and leucine-rich repeat proteins (NLRs) play pivotal roles in effector-triggered immunity (ETI). However, the precise mechanisms underlying NLR-mediated disease resistance remain elusive. Previous studies have demonstrated that the NLR gene pair Pik-H4 confers resistance to rice blast disease by interacting with the transcription factor OsBIHD1, consequently leading to the upregulation of hormone pathways. In the present study, we identified an RNA recognition motif (RRM) protein, OsRRM2, which interacted with Pik1-H4 and Pik2-H4 in vesicles and chloroplasts. OsRRM2 exhibited a modest influence on Pik-H4-mediated rice blast resistance by upregulating resistance genes and genes associated with chloroplast immunity. Moreover, the RNA-binding sequence of OsRRM2 was elucidated using systematic evolution of ligands by exponential enrichment. Transcriptome analysis further indicated that OsRRM2 promoted RNA editing of the chloroplastic gene ndhB. Collectively, our findings uncovered a chloroplastic RRM protein that facilitated the translocation of the NLR gene pair and modulated chloroplast immunity, thereby bridging the gap between ETI and chloroplast immunity.
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  • 文章类型: Journal Article
    几种生物分子缩合物在哺乳动物细胞中组装以响应病毒感染。其中研究最多的是应激颗粒(SGs),已提出促进抗病毒先天免疫信号通路,包括RLR-MAVS,蛋白激酶R(PKR),和OAS-RNaseL途径。然而,最近的研究表明,SGs负调节或不影响抗病毒信号。相反,SG-成核蛋白,G3BP1可以通过将病毒RNA浓缩成病毒聚集的RNA缩合物来扰乱病毒RNA生物学,从而解释了为什么病毒经常拮抗G3BP1或劫持其RNA缩合功能。然而,最近发现的凝析油,称为双链RNA诱导的病灶,促进PKR和OAS-RNaseL抗病毒途径的激活。此外,在许多病毒感染期间已观察到称为RNaseL诱导体(RLB)的SG样缩合物。包括SARS-CoV-2和几种黄病毒。RLBs可能在促进细胞和病毒RNA的衰变中起作用,以及促进核糖体相关的信号通路。在这里,我们回顾了抗病毒生物分子缩合物领域的最新进展,我们提供了对抗病毒应答过程中规范SGs和G3BP1的作用的观点。
    Several biomolecular condensates assemble in mammalian cells in response to viral infection. The most studied of these are stress granules (SGs), which have been proposed to promote antiviral innate immune signaling pathways, including the RLR-MAVS, the protein kinase R (PKR), and the OAS-RNase L pathways. However, recent studies have demonstrated that SGs either negatively regulate or do not impact antiviral signaling. Instead, the SG-nucleating protein, G3BP1, may function to perturb viral RNA biology by condensing viral RNA into viral-aggregated RNA condensates, thus explaining why viruses often antagonize G3BP1 or hijack its RNA condensing function. However, a recently identified condensate, termed double-stranded RNA-induced foci, promotes the activation of the PKR and OAS-RNase L antiviral pathways. In addition, SG-like condensates known as an RNase L-induced bodies (RLBs) have been observed during many viral infections, including SARS-CoV-2 and several flaviviruses. RLBs may function in promoting decay of cellular and viral RNA, as well as promoting ribosome-associated signaling pathways. Herein, we review these recent advances in the field of antiviral biomolecular condensates, and we provide perspective on the role of canonical SGs and G3BP1 during the antiviral response.
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  • 文章类型: Journal Article
    应激颗粒(SGs)是由各种环境应激源诱导的,导致它们的组成和功能异质性。SGs在抗病毒过程中起着至关重要的作用,由于其强大的翻译抑制作用和触发信号转导的能力;然而,我们对这些抗病毒SGs与其他环境应激源诱导的SGs有何不同知之甚少。在这里,我们发现TRIM25是泛素化依赖性抗病毒先天免疫反应的已知驱动因素,是抗病毒SGs的有效和关键标记。TRIM25经历液-液相分离(LLPS)并以dsRNA依赖性方式与SG核心蛋白G3BP1共缩合。TRIM25和G3BP1的共缩合导致TRIM25对多种抗病毒蛋白的泛素化活性显著增强,主要位于SGS。这种共缩合在激活RIG-I信号通路中至关重要,从而抑制RNA病毒感染。我们的研究为更好地理解应激颗粒成分的异质性及其对不同环境压力源的反应提供了一个概念框架。
    Stress granules (SGs) are induced by various environmental stressors, resulting in their compositional and functional heterogeneity. SGs play a crucial role in the antiviral process, owing to their potent translational repressive effects and ability to trigger signal transduction; however, it is poorly understood how these antiviral SGs differ from SGs induced by other environmental stressors. Here we identify that TRIM25, a known driver of the ubiquitination-dependent antiviral innate immune response, is a potent and critical marker of the antiviral SGs. TRIM25 undergoes liquid-liquid phase separation (LLPS) and co-condenses with the SG core protein G3BP1 in a dsRNA-dependent manner. The co-condensation of TRIM25 and G3BP1 results in a significant enhancement of TRIM25\'s ubiquitination activity towards multiple antiviral proteins, which are mainly located in SGs. This co-condensation is critical in activating the RIG-I signaling pathway, thus restraining RNA virus infection. Our studies provide a conceptual framework for better understanding the heterogeneity of stress granule components and their response to distinct environmental stressors.
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  • 文章类型: Journal Article
    皮肤,体内表面积最大的器官,最容易受到外部环境的化学暴露。在这项研究中,我们旨在建立一种体外皮肤毒性监测系统,该系统利用各种细胞应激诱导的应激颗粒(SG)形成机制。在HaCaT细胞中,包含人类皮肤的角质形成细胞系,在RasGTP酶激活蛋白结合蛋白1(G3BP1)的C端基因组基因座处敲入绿色荧光蛋白(GFP),SGs的代表性组件。G3BP1-GFP敲入HaCaT细胞和野生型(WT)HaCaT细胞在暴露于亚砷酸盐和家用化学物质后形成含有G3BP1-GFP的SGs,如双酚A(BPA)和苯扎氯铵(BAC),实时。此外,G3BP1-GFP敲入HaCaT细胞暴露于BPA和BAC促进真核起始因子2α和蛋白激酶R样内质网激酶的磷酸化,它们是参与SG形成的细胞信号因子,类似于WTHaCaT细胞。总之,这种新型的G3BP1-GFP敲入人类皮肤细胞系统可以实时监测SG的形成,并用于评估皮肤毒性对各种物质。
    The skin, the organ with the largest surface area in the body, is the most susceptible to chemical exposure from the external environment. In this study, we aimed to establish an in vitro skin toxicity monitoring system that utilizes the mechanism of stress granule (SG) formation induced by various cellular stresses. In HaCaT cells, a keratinocyte cell line that comprises the human skin, a green fluorescent protein (GFP) was knocked in at the C-terminal genomic locus of Ras GTPase-activating protein-binding protein 1 (G3BP1), a representative component of SGs. The G3BP1-GFP knock-in HaCaT cells and wild-type (WT) HaCaT cells formed SGs containing G3BP1-GFP upon exposure to arsenite and household chemicals, such as bisphenol A (BPA) and benzalkonium chloride (BAC), in real-time. In addition, the exposure of G3BP1-GFP knock-in HaCaT cells to BPA and BAC promoted the phosphorylation of eukaryotic initiation factor 2 alpha and protein kinase R-like endoplasmic reticulum kinase, which are cell signaling factors involved in SG formation, similar to WT HaCaT cells. In conclusion, this novel G3BP1-GFP knock-in human skin cell system can monitor SG formation in real-time and be utilized to assess skin toxicity to various substances.
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  • 文章类型: Journal Article
    尚不清楚BPIV3感染是否导致应激颗粒形成,以及G3BP1是否在此过程和病毒复制中起作用。本研究旨在阐明BPIV3与应激颗粒之间的关联,探讨G3BP1对BPIV3复制的影响,并对BPIV3逃避宿主抗病毒免疫以支持其自身生存的机制提供了重要见解。
    这里,我们用免疫荧光染色观察BPIV3感染对应激颗粒组装的影响。同时,测定eIF2α和G3BP1的表达变化。检测细胞内G3BP1水平的过表达或siRNA沉默对BPIV3复制的调节控制。
    我们确定BPIV3感染引起eIF2α蛋白的磷酸化。然而,它没有诱导应力颗粒的组装;相反,它抑制了胁迫颗粒的形成并下调了G3BP1的表达。G3BP1过表达促进细胞内应激颗粒的形成并阻碍病毒复制,而G3BP1敲低增强了BPIV3的表达。
    这项研究表明,G3BP1在BPIV3抑制应激颗粒形成和病毒复制中起着至关重要的作用。
    UNASSIGNED: It remains unclear whether BPIV3 infection leads to stress granules formation and whether G3BP1 plays a role in this process and in viral replication. This study aims to clarify the association between BPIV3 and stress granules, explore the effect of G3BP1 on BPIV3 replication, and provide significant insights into the mechanisms by which BPIV3 evades the host\'s antiviral immunity to support its own survival.
    UNASSIGNED: Here, we use Immunofluorescence staining to observe the effect of BPIV3 infection on the assembly of stress granules. Meanwhile, the expression changes of eIF2α and G3BP1 were determined. Overexpression or siRNA silencing of intracellular G3BP1 levels was examined for its regulatory control of BPIV3 replication.
    UNASSIGNED: We identify that the BPIV3 infection elicited phosphorylation of the eIF2α protein. However, it did not induce the assembly of stress granules; rather, it inhibited the formation of stress granules and downregulated the expression of G3BP1. G3BP1 overexpression facilitated the formation of stress granules within cells and hindered viral replication, while G3BP1 knockdown enhanced BPIV3 expression.
    UNASSIGNED: This study suggest that G3BP1 plays a crucial role in BPIV3 suppressing stress granule formation and viral replication.
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  • 文章类型: Journal Article
    应激颗粒(SGs)是无膜核糖核蛋白(RNP)为基础的细胞病灶,在响应应激,通过保护细胞免受损害来促进细胞存活。哺乳动物精子发生应保持在体温以下,以便适当发育,表明其对热应力(HS)的脆弱性。在这项研究中,生物素示踪剂通透性测定表明,4-8mg/kg环己酰亚胺对睾丸中热诱导的SG组装的抑制作用显着增加了睾丸屏障(BTB)受损的生精小管的百分比。Westernblot结果还显示,热诱导的SG组装在Sertoli细胞系中的抑制作用,TM4细胞,通过G3bp1/2的RNA推断加重了BTB相关蛋白ZO-1,β-Catenin和Claudin-11的下降,表明SGs可以保护BTB免受HS引起的损害。通过顺序离心和免疫沉淀分离与支持细胞中SGs相关的蛋白质成分,并通过液相色谱-串联质谱鉴定。基因本体论和KEGG通路富集分析显示,其相应基因主要参与蛋白酶体相关通路,核苷酸切除修复,失配修复,和DNA复制。此外,一个新的SG组件,泛素相关蛋白2(UBAP2),通过免疫荧光发现TM4细胞在HS后易位到SGs。此外,在HS期间,通过RNA推断,UBAP2敲除后,SG组装显著减少,表明UBAP2在SG组装中的重要作用。此外,UBAP2敲除降低了ZO-1,β-Catenin和Claudin-11的表达,这暗示了其在BTB功能中的潜在作用。总的来说,我们的研究证明了SGs在HS期间维持BTB功能中的作用,并确定了与支持细胞中SG形成有关的新成分.这些发现不仅为SGs的生物学功能和夏季男性低生育力的分子机制提供了新的见解,但也可能为男性生育疗法提供实验基础。
    Stress granules (SGs) are membraneless ribonucleoprotein (RNP)-based cellular foci formed in response to stress, facilitating cell survival by protecting against damage. Mammalian spermatogenesis should be maintained below body temperature for proper development, indicating its vulnerability to heat stress (HS). In this study, biotin tracer permeability assays showed that the inhibition of heat-induced SG assembly in the testis by 4-8 mg/kg cycloheximide significantly increased the percentage of seminiferous tubules with a damaged blood-testis barrier (BTB). Western blot results additionally revealed that the suppression of heat-induced SG assembly in Sertoli cell line, TM4 cells, by RNA inference of G3bp1/2 aggravated the decline in the BTB-related proteins ZO-1, β-Catenin and Claudin-11, indicating that SGs could protect the BTB against damage caused by HS. The protein components that associate with SGs in Sertoli cells were isolated by sequential centrifugation and immunoprecipitation, and were identified by liquid chromatography with tandem mass spectrometry. Gene Ontology and KEGG pathway enrichment analysis revealed that their corresponding genes were mainly involved in pathways related to proteasomes, nucleotide excision repair, mismatch repair, and DNA replication. Furthermore, a new SG component, the ubiquitin associated protein 2 (UBAP2), was found to translocate to SGs upon HS in TM4 cells by immunofluorescence. Moreover, SG assembly was significantly diminished after UBAP2 knockdown by RNA inference during HS, suggesting the important role of UBAP2 in SG assembly. In addition, UBAP2 knockdown reduced the expression of ZO-1, β-Catenin and Claudin-11, which implied its potential role in the function of the BTB. Overall, our study demonstrated the role of SGs in maintaining BTB functions during HS and identified a new component implicated in SG formation in Sertoli cells. These findings not only offer novel insights into the biological functions of SGs and the molecular mechanism of low fertility in males in summer, but also potentially provide an experimental basis for male fertility therapies.
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  • 文章类型: Journal Article
    有证据表明,COVID-19患者或疫苗与糖代谢功能障碍之间存在关联,糖尿病发生的风险更高。在这里,我们回顾性分析了2020年至2023年的67例SARS-CoV-2感染的非人灵长类动物(NHP)模型和121例接种和感染的NHP以及COVID-19患者的尸检组织中的胰腺病变.多标记免疫荧光显示病毒在NHP和人类中直接感染外分泌和内分泌胰腺细胞。在成人模型中观察到轻微和有限的表型和组织病理学变化。系统蛋白质组学和代谢组学结果表明代谢紊乱,主要富含胰岛素抵抗途径,在受感染的成人NHP中,同时空腹C肽和C肽/葡萄糖比率水平升高。此外,在老年COVID-19NHP中,SARS-CoV-2感染导致β(β)细胞丢失和原位胰岛素表达降低,其特征是胰岛淀粉样变性和坏死。α-SMA的激活和加重的纤维化,包括血清中的低胶原,胰腺炎症和应激标志物的增加,ICAM-1和G3BP1,以及更严重的糖代谢功能障碍。相比之下,疫苗接种通过激活胰岛素受体α和胰岛素受体β维持葡萄糖稳态。总的来说,COVID-19后糖尿病的累积风险与年龄密切相关,提示应重视老年COVID-19患者的血糖管理。
    Evidence suggests associations between COVID-19 patients or vaccines and glycometabolic dysfunction and an even higher risk of the occurrence of diabetes. Herein, we retrospectively analyzed pancreatic lesions in autopsy tissues from 67 SARS-CoV-2 infected non-human primates (NHPs) models and 121 vaccinated and infected NHPs from 2020 to 2023 and COVID-19 patients. Multi-label immunofluorescence revealed direct infection of both exocrine and endocrine pancreatic cells by the virus in NHPs and humans. Minor and limited phenotypic and histopathological changes were observed in adult models. Systemic proteomics and metabolomics results indicated metabolic disorders, mainly enriched in insulin resistance pathways, in infected adult NHPs, along with elevated fasting C-peptide and C-peptide/glucose ratio levels. Furthermore, in elder COVID-19 NHPs, SARS-CoV-2 infection causes loss of beta (β) cells and lower expressed-insulin in situ characterized by islet amyloidosis and necrosis, activation of α-SMA and aggravated fibrosis consisting of lower collagen in serum, an increase of pancreatic inflammation and stress markers, ICAM-1 and G3BP1, along with more severe glycometabolic dysfunction. In contrast, vaccination maintained glucose homeostasis by activating insulin receptor α and insulin receptor β. Overall, the cumulative risk of diabetes post-COVID-19 is closely tied to age, suggesting more attention should be paid to blood sugar management in elderly COVID-19 patients.
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  • 文章类型: Journal Article
    应力颗粒(SGs),主要成分是GTP酶激活蛋白结合蛋白1(G3BP1),它们在病毒感染期间组装并具有隔离宿主和病毒mRNA和蛋白质的功能,是抗病毒反应的一部分。在这项研究中,我们发现,猪三角洲冠状病毒(PDCoV)感染通过PERK(蛋白激酶R样内质网激酶)依赖性机制诱导细胞稳定形成稳健的SGs.SGs标记蛋白G3BP1的过表达在体外显著降低了PDCoV的复制,而内源性G3BP1的抑制增强了PDCoV的复制。此外,PDCoV感染的LLC-PK1细胞提高了G3BP1的磷酸化水平。通过过表达G3BP1磷酸化蛋白或G3BP1去磷酸化蛋白,我们发现G3BP1的磷酸化参与PDCoV诱导的炎症反应的调节.一起来看,我们的研究提出了宿主对入侵病原体的先天反应的一个重要方面,并揭示了抗病毒靶标的有吸引力的宿主靶标。
    Stress granules (SGs), the main component is GTPase-activating protein-binding protein 1 (G3BP1), which are assembled during viral infection and function to sequester host and viral mRNAs and proteins, are part of the antiviral responses. In this study, we found that porcine deltacoronavirus (PDCoV) infection induced stable formation of robust SGs in cells through a PERK (protein kinase R-like endoplasmic reticulum kinase)-dependent mechanism. Overexpression of SGs marker proteins G3BP1 significantly reduced PDCoV replication in vitro, while inhibition of endogenous G3BP1 enhanced PDCoV replication. Moreover, PDCoV infected LLC-PK1 cells raise the phosphorylation level of G3BP1. By overexpression of the G3BP1 phosphorylated protein or the G3BP1 dephosphorylated protein, we found that phosphorylation of G3BP1 is involved in the regulation of PDCoV-induced inflammatory response. Taken together, our study presents a vital aspect of the host innate response to invading pathogens and reveals attractive host targets for antiviral target.
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  • 文章类型: Journal Article
    叉头盒转录因子1(FOXM1)的异常表达在多种人类恶性肿瘤中起关键作用,并预测预后不良。然而,关于FOXM1和长链非编码RNA(lncRNA)在肿瘤发生中的串扰知之甚少。本研究鉴定了胃癌(GC)中先前未表征的lncRNAXLOC_008672,受FOXM1调控,拥有多个拷贝的串联重复序列。LncRNA微阵列用于筛选FOXM1敲低GC细胞中差异表达的lncRNA,然后筛选出最高倍数下调的lncRNAXLOC_008672。序列分析显示,新的lncRNA包含62个拷贝的37-bp串联重复序列。它被FOXM1转录激活,并通过体外和体内功能测定在GC细胞中充当FOXM1的下游效应物。在GC组织中发现XLOC_008672的表达升高,表明预后较差。机械上,XLOC_008672可以结合小核核糖核蛋白多肽A(SNRPA),从而增强Ras-GTP酶激活蛋白SH3结构域结合蛋白1(G3BP1)的mRNA稳定性,因此,促进GC细胞增殖和迁移。我们的研究发现了一种新的未表征的lncRNAXLOC_008672参与GC癌的发生和发展。靶向FOXM1/XLOC_008672/SNRPA/G3BP1信号轴可能是一种有前途的GC治疗策略。
    Aberrant expression of forkhead box transcription factor 1 (FOXM1) plays critical roles in a variety of human malignancies and predicts poor prognosis. However, little is known about the crosstalk between FOXM1 and long noncoding RNAs (lncRNAs) in tumorigenesis. The present study identifies a previously uncharacterized lncRNA XLOC_008672 in gastric cancer (GC), which is regulated by FOXM1 and possesses multiple copies of tandem repetitive sequences. LncRNA microarrays are used to screen differentially expressed lncRNAs in FOXM1 knockdown GC cells, and then the highest fold downregulation lncRNA XLOC_008672 is screened out. Sequence analysis reveals that the new lncRNA contains 62 copies of 37-bp tandem repeats. It is transcriptionally activated by FOXM1 and functions as a downstream effector of FOXM1 in GC cells through in vitro and in vivo functional assays. Elevated expression of XLOC_008672 is found in GC tissues and indicates worse prognosis. Mechanistically, XLOC_008672 can bind to small nuclear ribonucleoprotein polypeptide A (SNRPA), thereby enhancing mRNA stability of Ras-GTPase-activating protein SH3 domain-binding protein 1 (G3BP1) and, consequently, facilitating GC cell proliferation and migration. Our study discovers a new uncharacterized lncRNA XLOC_008672 involved in GC carcinogenesis and progression. Targeting FOXM1/XLOC_008672/SNRPA/G3BP1 signaling axis might be a promising therapeutic strategy for GC.
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