REEP4

  • 文章类型: Journal Article
    肾透明细胞癌(KIRC)在诊断时通常会出现转移,强调了识别更精确的生物标志物以进行早期检测的关键需求,干预,个性化治疗。尽管REEP家族已经在癌症发展中进行了调查,REEP4与癌症之间的具体关系尚不清楚.在我们的研究中,我们采用生物信息学分析,并进行了基础实验,以评估REEP4作为预测KIRC预后和疗效的生物标志物的潜力.比较KIRC肿瘤组织与正常组织,我们观察到REEP4表达显著上调,更高水平的REEP4与肿瘤恶性程度呈正相关。进一步的COX回归分析,以及单因素和多因素分析,证实高REEP4表达表明KIRC的存活率较低。基因功能分析还确定了REEP4与细胞周期等关键途径之间的关联。以及它参与蛋白质结合。此外,我们对免疫应答的研究表明,良好的免疫治疗应答与REEP4表达的降低有关.随后,我们进行了体外实验以证实REEP4在KIRC肿瘤组织和肾癌细胞中的过表达。总之,我们的研究表明REEP4表达与KIRC密切相关,强调其与预后和免疫反应的相关性。这些发现表明REEP4是KIRC的潜在生物标志物。
    Kidney clear cell carcinoma (KIRC) commonly presents with metastases upon diagnosis, highlighting the critical need to identify more precise biomarkers for early detection, intervention, and personalized treatment. Although The REEP family has been investigated in cancer development, the specific relationship between REEP4 and cancer remains unclear. In our study, we employed bioinformatics analysis and conducted fundamental experiments to evaluate the potential of REEP4 as a biomarker for predicting the prognosis and therapeutic efficacy of KIRC. Comparing KIRC tumor tissues to normal tissues, we observed a significant upregulation in REEP4 expression, with higher levels of REEP4 correlating positively with tumor malignancy. Further COX regression analysis, as well as single and multifactorial analyses, confirmed that high REEP4 expression indicated lower survival rates in KIRC. Gene function analysis also identified associations between REEP4 and critical pathways such as the cell cycle, along with its involvement in protein binding. Furthermore, our investigation of the immune response suggests that a favorable immunotherapeutic response is linked to a reduction in REEP4 expression. Subsequently, we conducted in vitro experiments to confirm the overexpression of REEP4 in KIRC tumor tissues and renal cancer cells. In summary, our study revealed a close association between REEP4 expression and KIRC, emphasizing its correlation with prognosis and the immune response. These findings suggest that REEP4 is a potential biomarker for KIRC.
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  • 文章类型: Journal Article
    背景:REEP4参与有丝分裂的生物学过程的调节。低级别的神经胶质瘤(LGG),作为恶性肿瘤,伴有有丝分裂异常,但是到目前为止还没有REEP4的报道。
    方法:我们收集了转录组数据,DNA甲基化数据和成千上万LGG患者的临床特征。采用各种大数据分析方法和分子生物学实验来揭示REEP4对LGG病理过程的影响。
    结果:发现REEP4的表达显着升高,并受到其甲基化位点的负调控。因此,REEP4的高表达和cg1631404的低甲基化状态均显示患者生存率较低。此外,REEP4高表达参与多种癌症相关细胞信号通路的调节,比如细胞周期,MAPK信号通路,NOD样受体信号通路,等。更重要的是,LGG肿瘤微环境中REEP4高表达组的免疫细胞浸润水平显著增加,且REEP4与PD-L1等免疫检查点呈高度正相关。
    结论:简而言之,这项研究首次将REEP4引入恶性肿瘤中,可作为参与LGG恶性进程的独立危险因素。更重要的是,REEP4有潜力成为抗肿瘤医治范畴的一颗新星。
    REEP4 is involved in the regulation of the biological process of mitosis. Lower grade glioma (LGG), as a malignant tumor, is accompanied by abnormalities in mitosis, but there have been no reports of REEP4 so far.
    We collected transcriptome data, DNA methylation data and the clinical characteristics of thousands of patients with LGG. Various big data analysis methods and molecular biology experiments were employed to reveal the impact of REEP4 on the pathological process of LGG.
    It was found that the expression of REEP4 was significantly elevated and negatively regulated by its methylation site. Therefore, both the high expression of REEP4 and low methylation state of cg16311504 showed that the patients are correlated with lower patient survival rate. In addition, high REEP4 expression participates in the regulation of various cancer-related cellular signaling pathways, such as the cell cycle, MAPK signaling pathway, NOD-like receptor signaling pathway, etc. More importantly, the level of immune cell infiltration significantly increased in the high expression group of REEP4 in the LGG tumor microenvironment and REEP4 has a high positive correlation with PD-L1 and other immune checkpoints.
    In brief, this study is the first to introduce REEP4 in malignant tumors, which can be used as an independent risk factor that participates in the malignant process of LGG. More importantly, REEP4 has the potential to become a new star in the field of anti-tumor treatment.
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  • 文章类型: Journal Article
    The growing trend for women to postpone childbearing has resulted in a dramatic increase in the incidence of aneuploid pregnancies. Despite the importance to human reproductive health, the events precipitating female age-related meiotic errors are poorly understood. To gain new insight into the molecular basis of age-related chromosome missegregation in human oocytes, we combined the transcriptome profiles of twenty single oocytes (derived from females divided into two groups according to age <35 and ≥35 years) with their chromosome status obtained by array comparative genomic hybridization (aCGH). Furthermore, we compared the transcription profile of the single oocyte with the surrounding cumulus cells (CCs). RNA-seq data showed differences in gene expression between young and old oocytes. Dysregulated genes play a role in important biological processes such as gene transcription regulation, cytoskeleton organization, pathways related to RNA maturation and translation. The comparison of the transcription profile of the oocyte and the corresponding CCs highlighted the differential expression of genes belonging to the G protein-coupled receptor superfamily. Finally, we detected the loss of a X chromosome in two oocytes derived from women belonging to the ≥35 years age group. These aneuploidies may be caused by the detriment of REEP4, an endoplasmic reticulum protein, in women aged ≥35 years. Here we gained new insight into the complex regulatory circuit between the oocyte and the surrounding CCs and uncovered a new putative molecular basis of age-related chromosome missegregation in human oocytes.
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  • 文章类型: Journal Article
    Blepharospasm is a common type of focal dystonia that involves involuntary eyelid spasms and eye closure. In familial cases, an autosomal dominant pattern of inheritance is noted with reduced penetrance. Few genes have been associated with the disease including GNAL and CIZ1. A whole exome sequencing study published lately suggested TOR2A and REEP4 as potential candidate genes.
    Sanger sequencing of GNAL, CIZ1, TOR2A and REEP4 exons including exon-intron boundaries in 132 patients diagnosed primarily with blepharospasm and/or Meige\'s syndrome.
    All variants detected in GNAL, CIZ1 and TOR2A seem to be benign. Sequencing of REEP4 revealed the presence of two nonsynonymous SNVs, one potential splice site variant and one indel all predicted to be damaging by in silico algorithms.
    Sequencing REEP4 in larger blepharospasm cohorts and functional studies will need to be performed to further elucidate the association between REEP4 and the disease.
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