Protein multifunctionality

  • 文章类型: Journal Article
    细胞外基质蛋白通过多功能机制在骨骼和牙齿等矿化组织的形成中起着至关重要的作用。在牙釉质中,成釉细胞蛋白(Ambn)是一种涉及细胞信号传导和极性的多功能细胞外基质蛋白,细胞粘附在发育中的釉质基质上,棱柱形釉质形态的稳定。为Ambn的结构和功能提供视角,我们从描述牙釉质和牙釉质形成(牙釉质发生)开始这篇综述,然后描述牙釉质细胞外基质。然后,我们总结了Ambn蛋白中已建立的结构域和基序,人类釉质发生不全症病例,和涉及突变或无效Ambn的基因工程小鼠模型。我们随后在计算机上描绘,在体外,以及Ambn中两亲性螺旋作为拟议的细胞-基质粘合剂的体内证据,然后是多靶向域作为Ambn与自身动态相互作用的基础的最新体外证据,釉原蛋白,和膜。多靶向结构域促进Ambn-膜相互作用和自/共组装之间的调节,并且支持Ambn作为基质细胞蛋白的可能的总体作用。我们预计,这篇综述将通过巩固Ambn有助于釉质细胞外基质矿化的多种机制来增强对多功能基质蛋白的理解。
    Extracellular matrix proteins play crucial roles in the formation of mineralized tissues like bone and teeth via multifunctional mechanisms. In tooth enamel, ameloblastin (Ambn) is one such multifunctional extracellular matrix protein implicated in cell signaling and polarity, cell adhesion to the developing enamel matrix, and stabilization of prismatic enamel morphology. To provide a perspective for Ambn structure and function, we begin this review by describing dental enamel and enamel formation (amelogenesis) followed by a description of enamel extracellular matrix. We then summarize the established domains and motifs in Ambn protein, human amelogenesis imperfecta cases, and genetically engineered mouse models involving mutated or null Ambn. We subsequently delineate in silico, in vitro, and in vivo evidence for the amphipathic helix in Ambn as a proposed cell-matrix adhesive and then more recent in vitro evidence for the multitargeting domain as the basis for dynamic interactions of Ambn with itself, amelogenin, and membranes. The multitargeting domain facilitates tuning between Ambn-membrane interactions and self/co-assembly and supports a likely overall role for Ambn as a matricellular protein. We anticipate that this review will enhance the understanding of multifunctional matrix proteins by consolidating diverse mechanisms through which Ambn contributes to enamel extracellular matrix mineralization.
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  • 文章类型: Journal Article
    结核分枝杆菌烯醇化酶是一种必需的糖酵解酶,可催化2,磷酸甘油酸(PGA)转化为磷酸烯醇丙酮酸(PEP)。它也是糖酵解和三羧酸(TCA)途径之间的关键联系。PEP的消耗最近与非复制耐药细菌的出现有关。还已知烯醇化酶表现出多种替代功能,例如通过其作为纤溶酶原(Plg)受体的作用促进组织侵入。此外,蛋白质组学研究已经确定了烯醇化酶在Mtb降解体和生物膜中的存在。然而,在这些过程中的确切作用尚未详细说明。该酶最近被确定为2-氨基噻唑的靶标-一种新型的抗分枝杆菌。由于无法获得功能性重组蛋白,因此该酶的体外测定和表征不成功。在本研究中,我们报道了使用MtbH37Ra作为宿主菌株的烯醇化酶的表达和表征。我们的研究表明,该蛋白质的酶活性和替代功能受到表达宿主(MtbH37Ra或大肠杆菌)选择的显着影响。对来自每个来源的蛋白质的详细分析揭示了翻译后修饰的细微差别。最后,我们的研究证实了烯醇化酶在Mtb生物膜形成中的作用,并描述了抑制这一过程的潜力。
    Mycobacterium tuberculosis enolase is an essential glycolytic enzyme that catalyzes the conversion of 2, phosphoglycerate (PGA) to phosphoenol pyruvate (PEP). It is also a crucial link between glycolysis and the tricarboxylic acid (TCA) pathway. The depletion of PEP has recently been associated with the emergence of non-replicating drug resistant bacteria. Enolase is also known to exhibit multiple alternate functions, such as promoting tissue invasion via its role as a plasminogen (Plg) receptor. In addition, proteomic studies have identified the presence of enolase in the Mtb degradosome and in biofilms. However, the precise role in these processes has not been elaborated. The enzyme was recently identified as a target for 2-amino thiazoles - a novel class of anti-mycobacterials. In vitro assays and characterization of this enzyme were unsuccessful due to the inability to obtain functional recombinant protein. In the present study, we report the expression and characterization of enolase using Mtb H37Ra as a host strain. Our study demonstrates that the enzyme activity and alternate functions of this protein are significantly impacted by the choice of expression host (Mtb H37Ra or E. coli). Detailed analysis of the protein from each source revealed subtle differences in the post-translational modifications. Lastly, our study confirms the role of enolase in Mtb biofilm formation and describes the potential for inhibiting this process.
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  • 文章类型: Journal Article
    病毒与宿主蛋白形成广泛的界面来调节被感染细胞的生物学,经常通过多功能病毒蛋白。这些蛋白质通常被认为是独立的功能模块的集合。其中模块的存在或不存在决定了整体复合表型。然而,该模型不能解释在特定病毒蛋白中观察到的功能。例如,狂犬病病毒(RABV)P3蛋白是致病因子P蛋白的截短形式,但表现出一种独特的表型,其功能在较长的同种型中看不到,表明超出功能模块简单补充的变化定义了P3的功能。这里,我们报告了来自致病性RABV菌株Nishigahara(Nish)和减毒衍生菌株(Ni-CE)的P3的结构和细胞分析。我们确定了涉及球形C末端结构域和N末端区域的固有无序区域(IDR)的内质子相互作用网络,这些区域表征了全功能NishP3在开放状态和封闭状态之间波动,而有缺陷的Ni-CEP3主要是开放的。这种构象差异似乎是由于Ni-CEP3中的单突变N226H。我们发现NishP3,而不是Ni-CE或N226HP3,经历液-液相分离,这种性质与P3与不同的无细胞膜细胞器相互作用的能力相关,包括与免疫逃避和发病机制有关的那些。我们的分析表明,关键的多功能病毒蛋白的离散功能取决于远处的单个结构域和IDR的构象排列,除了它们的独立功能。
    Viruses form extensive interfaces with host proteins to modulate the biology of the infected cell, frequently via multifunctional viral proteins. These proteins are conventionally considered as assemblies of independent functional modules, where the presence or absence of modules determines the overall composite phenotype. However, this model cannot account for functions observed in specific viral proteins. For example, rabies virus (RABV) P3 protein is a truncated form of the pathogenicity factor P protein, but displays a unique phenotype with functions not seen in longer isoforms, indicating that changes beyond the simple complement of functional modules define the functions of P3. Here, we report structural and cellular analyses of P3 derived from the pathogenic RABV strain Nishigahara (Nish) and an attenuated derivative strain (Ni-CE). We identify a network of intraprotomer interactions involving the globular C-terminal domain and intrinsically disordered regions (IDRs) of the N-terminal region that characterize the fully functional Nish P3 to fluctuate between open and closed states, whereas the defective Ni-CE P3 is predominantly open. This conformational difference appears to be due to the single mutation N226H in Ni-CE P3. We find that Nish P3, but not Ni-CE or N226H P3, undergoes liquid-liquid phase separation and this property correlates with the capacity of P3 to interact with different cellular membrane-less organelles, including those associated with immune evasion and pathogenesis. Our analyses propose that discrete functions of a critical multifunctional viral protein depend on the conformational arrangements of distant individual domains and IDRs, in addition to their independent functions.
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  • 文章类型: Journal Article
    鲍曼不动杆菌感染(A.鲍曼不动杆菌)在全球范围内迅速增加,因此治疗的治疗选择有限。多重耐药(MDR)菌株的出现使可用的抗生素无效,迫切需要发现新的药物和药物靶点。维生素B6生物合成途径已被认为是潜在的抗菌药物靶标,但其对于鲍曼不动杆菌尚未表征。在目前的工作中,我们已经进行了红系-4-磷酸脱氢酶(E4PDH)(EC1.2.1.72)的计算机和生化表征。该酶催化脱氧木酮糖-5-磷酸(DXP)依赖性维生素B6生物合成途径中的第一步,即d-赤藓糖-4-磷酸(E4P)转化为4-磷酸赤藓酸盐。E4PDH还具有额外的活性,由此它可以催化甘油醛-3-磷酸(G3P)向1,3双磷酸甘油酸(1,3BPG)的转化。我们的研究表明,该酶具有替代的月光作用,可作为人类铁转运蛋白转铁蛋白(Tf)和乳铁蛋白(Lf)的细胞表面受体。本工作报告了Tf的内部化和随之而来的铁收购作为铁收购的替代策略。鉴于其在两个关键途径,即代谢和铁获取中的重要作用,鲍曼不动杆菌E4PDH可能在细菌发病机理中起重要作用。
    Infections due to Acinetobacter baumannii (A. baumannii) are rapidly increasing worldwide and consequently therapeutic options for treatment are limited. The emergence of multi drug resistant (MDR) strains has rendered available antibiotics ineffective, necessitating the urgent discovery of new drugs and drug targets. The vitamin B6 biosynthetic pathway has been considered as a potential antibacterial drug target but it is as yet uncharacterized for A. baumannii. In the current work, we have carried out in silico and biochemical characterization of Erythrose-4-phosphate dehydrogenase (E4PDH) (EC 1.2.1.72). This enzyme catalyzes the first step in the deoxyxylulose-5-phosphate (DXP) dependent Vitamin B6 biosynthetic pathway i.e. the conversion of d-erythrose-4-phosphate (E4P) to 4-Phosphoerythronate. E4PDH also possesses an additional activity whereby it can catalyze the conversion of Glyceraldehyde-3-phosphate (G3P) to 1,3 bisphosphoglycerate (1,3BPG). Our studies have revealed that this enzyme exhibits an alternate moonlighting function as a cell surface receptor for the human iron transport proteins transferrin (Tf) and lactoferrin (Lf). The present work reports the internalization of Tf and consequent iron acquisition as an alternate strategy for iron acquisition. Given its essential role in two crucial pathways i.e. metabolism and iron acquisition, A. baumannii E4PDH may play a vital role in bacterial pathogenesis.
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  • 文章类型: Journal Article
    病毒的生命周期涉及与宿主细胞的相互作用,条目,劫持病毒复制的宿主机器,逃避宿主的免疫系统,释放成熟的病毒体.然而,病毒,尺寸小,只能拥有一个足够大的基因组来编码病毒粒子复制和成熟所需的最少数量的蛋白质。因此,许多病毒蛋白是多功能机器,不直接服从经典的结构-功能范式。通常,这种多功能性根植于内在障碍,使病毒蛋白与各种细胞因子相互作用,并在不同细胞区室的恶劣环境中保持功能。
    本报告涵盖了黄病毒的分类,他们的蛋白质组组织,以及不同黄病毒蛋白质组中内在紊乱的患病率。Further,我们总结了有关内在疾病在观察到的黄病毒蛋白多功能性中的明显作用的推测。
    小尺寸的病毒基因组给它们的蛋白质带来了多功能性,这取决于过度使用内在障碍。事实上,内在障碍是一种通用的功能工具,武器,和病毒的盔甲,显然在其功能和进化中起着重要作用。
    The life cycle of a virus involves interacting with the host cell, entry, hijacking host machinery for viral replication, evading the host\'s immune system, and releasing mature virions. However, viruses, being small in size, can only harbor a genome large enough to code for the minimal number of proteins required for the replication and maturation of the virions. As a result, many viral proteins are multifunctional machines that do not directly obey the classic structure-function paradigm. Often, such multifunctionality is rooted in intrinsic disorder that allows viral proteins to interact with various cellular factors and remain functional in the hostile environment of different cellular compartments.
    This report covers the classification of flaviviruses, their proteome organization, and the prevalence of intrinsic disorder in the proteomes of different flaviviruses. Further, we have summarized the speculations made about the apparent roles of intrinsic disorder in the observed multifunctionality of flaviviral proteins.
    Small sizes of viral genomes impose multifunctionality on their proteins, which is dependent on the excessive usage of intrinsic disorder. In fact, intrinsic disorder serves as a universal functional tool, weapon, and armor of viruses and clearly plays an important role in their functionality and evolution.
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  • 文章类型: Journal Article
    Tissue inhibitor of metalloproteinase 1 (TIMP-1) is a major player in preserving tissue integrity and has recently also emerged as a decisive factor in several human pathologies. This appreciation has prompted this review addressing the largely underestimated complexity of the functions executed by TIMP-1 and their mechanistic basis. In fact, the versatile impact of TIMP-1 on cellular functions stems from its two-domain structure harboring metalloproteinase-inhibitory and cytokine-like signaling activities. This feature leads to functional interactions with numerous and distinct enzymatic and cell-surface proteins that initiate an exceptionally broad range of downstream effects. We propose here that this multifunctionality and the remarkably large interactome explain the diverse biological consequences of TIMP-1 expression in health and disease.
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