Pathology report

病理报告
  • 文章类型: Case Reports
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  • 文章类型: Journal Article
    雌激素受体α基因(ESRl)的突变可导致激素受体阳性(HR)/HER2转移性乳腺癌(MBC)对内分泌治疗(ET)的抵抗。在循环肿瘤DNA(ctDNA)中用ET预处理的患者中,可以检测到多达40%的ESR1突变。来自前瞻性随机试验的数据强调了那些具有可检测到的ESR1突变的HR+/HER2-MBC患者在接受新型选择性雌激素受体降解剂(SERD)时的预后更好。因为它是重要的及时检测临床上可行的癌症突变\'实时\',目前非常需要优化HR+/HER2-MBC中液体活检样本的ESR1测试策略,包括标准化天气病理学报告。我们的手稿旨在阐明在MBC中进行ESR1测试的临床和生物学原理,同时严格检查当前可用的ctDNA分子检测指南和建议。该目标将扩展到MBC中ESR1测试的协调和标准化的关键方面,特别关注病理学实验室工作流程。最后,我们提出了一个清晰而全面的模型来报告HR+/HER2-MBC中ctDNA的ESR1测试结果。
    Mutations in the estrogen receptor alpha gene (ESR1) can lead to resistance to endocrine therapy (ET) in hormone receptor-positive (HR+)/ HER2- metastatic breast cancer (MBC). ESR1 mutations can be detected in up to 40 % of patients pretreated with ET in circulating tumor DNA (ctDNA). Data from prospective randomized trials highlight those patients with HR+/HER2- MBC with detectable ESR1 mutations experience better outcomes when receiving novel selective estrogen receptor degraders (SERDs). There is a high need for optimizing ESR1 testing strategies on liquid biopsy samples in HR+/HER2- MBC, including a hugh quality workflow implementation and molecular pathology reporting standardization. Our manuscript aims to elucidate the clinical and biological rationale for ESR1 testing in MBC, while critically examining the currently available guidelines and recommendations for this specific type of molecular testing on ctDNA. The objective will extend to the critical aspects of harmonization and standardization, specifically focusing on the pathology laboratory workflow. Finally, we propose a clear and comprehensive model for reporting ESR1 testing results on ctDNA in HR+/HER2- MBC.
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  • 文章类型: Journal Article
    本文介绍了用于病理报告的健康七级快速医疗保健互操作性资源(FHIR)配置文件的开发,该配置文件与整个幻灯片图像和临床数据集成在一起,以创建病理学研究数据库。报告模板旨在收集结构化报告,使病理学家能够根据检查表选择结构化术语,允许用于描述肿瘤特征的术语的标准化。我们收集并分析了190份自由文本格式的非小细胞肺癌病理报告,然后通过将逐项词汇映射到FHIR观察资源来构建它们,使用国际标准术语,如国际疾病分类,LOINC,SNOMEDCT由此产生的FHIR配置文件作为实施指南发布,其中包括25个基本数据元素的配置文件,值集,和结构化定义,用于整合与病理报告相关的临床数据和病理图像。这些配置文件可以在系统之间交换结构化数据,并有助于将病理数据集成到电子健康记录中,这可以提高癌症患者的护理质量。
    This paper describes the development of Health Level Seven Fast Healthcare Interoperability Resource (FHIR) profiles for pathology reports integrated with whole slide images and clinical data to create a pathology research database. A report template was designed to collect structured reports, enabling pathologists to select structured terms based on a checklist, allowing for the standardization of terms used to describe tumor features. We gathered and analyzed 190 non-small-cell lung cancer pathology reports in free text format, which were then structured by mapping the itemized vocabulary to FHIR observation resources, using international standard terminologies, such as the International Classification of Diseases, LOINC, and SNOMED CT. The resulting FHIR profiles were published as an implementation guide, which includes 25 profiles for essential data elements, value sets, and structured definitions for integrating clinical data and pathology images associated with the pathology report. These profiles enable the exchange of structured data between systems and facilitate the integration of pathology data into electronic health records, which can improve the quality of care for patients with cancer.
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  • 文章类型: Journal Article
    深度学习应用于全片组织病理学图像(WSI)具有提高肿瘤学精度和减轻专家工作量的潜力。然而,开发这些模型需要大量具有地面实况标签的数据,这既耗时又昂贵。病理学报告通常是非结构化或结构不良的文本,实施结构化报告模板的努力没有成功,因为这些努力会导致额外的工作量。在这项研究中,我们假设大型语言模型(LLM),例如发电预训练变压器4(GPT-4),可以使用零镜头方法从非结构化的简单语言报告中提取结构化数据,而不需要任何重新训练。我们通过利用GPT-4从组织病理学报告中提取信息来检验这一假设,集中于两组广泛的结直肠癌和胶质母细胞瘤的病理报告。我们发现LLM生成的结构化数据与人工生成的结构化数据之间存在高度一致性。因此,未来,LLM可能会被常规地用于从非结构化病理报告中提取机器学习的地面实况数据。©2023作者。由JohnWiley&SonsLtd代表英国和爱尔兰病理学会出版的病理学杂志。
    Deep learning applied to whole-slide histopathology images (WSIs) has the potential to enhance precision oncology and alleviate the workload of experts. However, developing these models necessitates large amounts of data with ground truth labels, which can be both time-consuming and expensive to obtain. Pathology reports are typically unstructured or poorly structured texts, and efforts to implement structured reporting templates have been unsuccessful, as these efforts lead to perceived extra workload. In this study, we hypothesised that large language models (LLMs), such as the generative pre-trained transformer 4 (GPT-4), can extract structured data from unstructured plain language reports using a zero-shot approach without requiring any re-training. We tested this hypothesis by utilising GPT-4 to extract information from histopathological reports, focusing on two extensive sets of pathology reports for colorectal cancer and glioblastoma. We found a high concordance between LLM-generated structured data and human-generated structured data. Consequently, LLMs could potentially be employed routinely to extract ground truth data for machine learning from unstructured pathology reports in the future. © 2023 The Authors. The Journal of Pathology published by John Wiley & Sons Ltd on behalf of The Pathological Society of Great Britain and Ireland.
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  • 文章类型: Journal Article
    神经内分泌肿瘤(NETs)是一组生物学和临床上异质性肿瘤,主要见于胃肠道和支气管肺道。尽管发病率上升,对这一异质群体实施循证标准化护理仍然具有挑战性.欧洲神经内分泌肿瘤协会定期审查有关NETs诊断和治疗策略的指南。这项研究的目的是阐明比利时林堡的网络患者的护理,提供数据作为未来研究的基础,并检查数据和结果是否符合文献中描述的共识指南和结局。
    我们的研究涉及对患者概况特别感兴趣的两家比利时大型医院(JessaHasseltHospital和Oost-LimburgGenk医院)的详细观察数据收集,病理报告的质量,使用诊断成像,和总体生存率。2010年1月至2014年12月收集了188例患者的数据,随访至2016年6月(中位随访时间:33.6个月)。
    50%的患者是男性。NETs主要位于消化道(63.8%)和肺(20.2%)。阑尾NETs的诊断年龄明显低于其他肿瘤(41.3vs.64.0年)。总的来说,观察到小肠NETs的平均病理报告质量评分为3.0/5,其中最高评分.74.5%和29.8%的病例进行了诊断和核显像,分别。74%的人口存活到观察期结束,阑尾和小肠NET的存活率最高。
    总的来说,流行病学结果与文献中的结果具有可比性.胃肠道NETs符合欧洲神经内分泌肿瘤学会共识指南中列出的大多数定性病理报告和诊断成像要求。然而,关于支气管肺NET的共识仍然很少,仍然是未来研究的目标。此外,在专门的多学科肿瘤委员会中讨论治疗策略将有助于区域护理.
    UNASSIGNED: Neuroendocrine tumors (NETs) are a group of biologically and clinically heterogeneous neoplasms predominantly found in the gastrointestinal and bronchopulmonary tractus. Despite a rising incidence, implementation of evidence-based standardized care for this heterogenous group remains challenging. The European Neuroendocrine Tumor Society regularly reviews guidelines regarding diagnostic and treatment strategies for NETs. The aim of this study is to shed light on the care of patients with a NET in Belgian Limburg, to provide data as a basis for future studies and to check whether data and results are according to consensus guidelines and outcomes described in literature.
    UNASSIGNED: Our study concerned a detailed observational data collection of two large Belgian hospitals (Jessa Hospital Hasselt and Hospital Oost-Limburg Genk) with special interest in patient profile, quality of pathology reports, use of diagnostic imaging, and overall survival. Data on 188 patients were assembled between January 2010 and December 2014 with follow-up until June 2016 (median follow-up: 33.6 months).
    UNASSIGNED: Fifty percent of patients were male. NETs were located mainly in the digestive tract (63.8%) and lung (20.2%). Appendiceal NETs were diagnosed at a significantly younger age than other tumors (41.3 vs. 64.0 years). Overall, a mean pathology report quality score of 3.0/5 was observed with the highest scores for small bowel NETs. Diagnostic and nuclear imaging was performed in 74.5% and 29.8% of cases, respectively. Seventy-four percent of the population survived until the end of the observation period with highest survival rates for appendiceal and small bowel NETs.
    UNASSIGNED: Overall, epidemiological results were comparable with findings in the literature. Gastrointestinal NETs met most of the requirements of qualitative pathology reporting and diagnostic imaging as listed in the European Neuroendocrine Tumor Society consensus guidelines. However, consensus with regard to bronchopulmonary NETs is still scarce and remains an objective for future research. Moreover, discussing treatment strategies in specialized multidisciplinary tumor boards would facilitate regional care.
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  • 文章类型: Journal Article
    自2022年6月发布DESTINY-Breast04(DB-04)试验结果以来,病理学领域已经看到HER2作为乳腺癌预测生物标志物的复兴。该试验的重点是被分类为“低HER2”的转移性乳腺癌患者,\"即,免疫组织化学(IHC)HER21+或2+和阴性原位杂交(ISH)结果。研究表明,用曲妥珠单抗deruxtecan(T-DXd)代替肿瘤学家选择的化疗治疗这些患者可显著改善生存率。这对现有的二元HER2病理分类系统提出了挑战,将肿瘤分类为阳性(过表达/扩增)或阴性,根据ASCO/CAP2023指南更新重申的ASCO/CAP2018指南。鉴于DB-04排除了HER2IHC评分为0的患者,正在进行的DB-06试验的结果可能进一步揭示T-DXd治疗对这些患者的潜在益处.据估计,大约一半的乳腺癌属于低HER2类别。不代表癌症的独特或特定亚型。相反,它包括一组不同的肿瘤,表现出临床,形态学,免疫组织化学,和分子变异。然而,HER2-low提供了一种独特的生物标志物状态,可识别特定的治疗方案(即T-DXd)与乳腺癌的良好预后有关。这种独特的关联强调了准确识别这些肿瘤的重要性。到目前为止,HER2IHC评分0和评分1+之间的区别在临床上并不显著。为了确保分类准确,避免误诊,有必要采取标准化的程序,指导方针,并对病理学家进行专门培训,以解释较低光谱中的HER2表达。此外,人工智能的利用有望支持这一努力。这里,我们解决了评估HER2低状态的最新技术和未解决的问题,特别强调0分。基于传统的HER2检测,我们探讨了将HER2-零患者排除在潜在有益治疗之外的困境。此外,我们检查了临床背景,考虑到DB-04主要涉及大量预处理的晚期转移性乳腺癌。我们还深入研究了新出现的证据,表明从原始诊断推断HER2低状态可能会导致误导性结果。最后,我们为开展高质量检测提供建议,并根据2023年ASCO/CAP更新和2023年ESMO关于低HER2乳腺癌的共识声明提出标准化病理报告.
    Since the release of the DESTINY-Breast04 (DB-04) trial findings in June 2022, the field of pathology has seen a renaissance of HER2 as a predictive biomarker in breast cancer. The trial focused on patients with metastatic breast cancer who were classified as \"HER2-low,\" i.e., those with immunohistochemistry (IHC) HER2 1 + or 2 + and negative in situ hybridization (ISH) results. The study revealed that treating these patients with trastuzumab deruxtecan (T-DXd) instead of the oncologist\'s chosen chemotherapy led to outstanding improvements in survival. This has challenged the existing binary HER2 pathological classification system, which categorized tumors as either positive (overexpression/amplification) or negative, as per the ASCO/CAP 2018 guideline reaffirmed by ASCO/CAP 2023 guideline update. Given that DB-04 excluded patients with HER2 IHC score 0 status, the results of the ongoing DB-06 trial may shed further light on the potential benefits of T-DXd therapy for these patients. Roughly half of all breast cancers are estimated to belong to the HER2-low category, which does not represent a distinct or specific subtype of cancer. Instead, it encompasses a diverse group of tumors that exhibit clinical, morphological, immunohistochemical, and molecular variations. However, HER2-low offers a distinctive biomarker status that identifies a specific therapeutic regimen (i.e., T-DXd) linked to a favorable prognosis in breast cancer. This unique association emphasizes the importance of accurately identifying these tumors. Differentiating between a HER2 IHC score 0 and score 1 + has not been clinically significant until now. To ensure accurate classification and avoid misdiagnosis, it is necessary to adopt standardized procedures, guidelines, and specialized training for pathologists in interpreting HER2 expression in the lower spectrum. Additionally, the utilization of artificial intelligence holds promise in supporting this endeavor. Here, we address the current state of the art and unresolved issues in assessing HER2-low status, with a particular emphasis on the score 0. We explore the dilemma surrounding the exclusion of HER2-zero patients from potentially beneficial therapy based on traditional HER2 testing. Additionally, we examine the clinical context, considering that DB-04 primarily involved heavily pretreated late-stage metastatic breast cancers. We also delve into emerging evidence suggesting that extrapolating HER2-low status from the original diagnosis may lead to misleading results. Finally, we provide recommendations for conducting high-quality testing and propose a standardized pathology report in compliance with 2023 ASCO/CAP updates and 2023 ESMO consensus statements on HER2-low breast cancer.
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  • 文章类型: Journal Article
    背景:内窥镜活检程序越来越多地从多个部位产生多个组织样本,并经常同时检索细胞学标本和小芯针活检。目前,对于细胞病理学家或外科病理学家是否应检查此类样本,在亚专业实践中缺乏共识。以及病理结果是否应一起报告或单独报告。
    方法:2021年12月,美国细胞病理学学会召集了Re-Imagine细胞病理学工作组,以检查各种工作流程,以促进同时获得的活检的统一病理报告并改善临床护理。
    结论:这篇立场文件总结了要点,突出了优势,挑战,以及可用于支持实现此类工作流的资源,这些工作流导致“一个过程-一个报告”。
    BACKGROUND: Endoscopic biopsy procedures increasingly generate multiple tissue samples from multiple sites, and frequently retrieve concurrent cytologic specimens and small core needle biopsies. There is currently lack of consensus in subspecialized practices as to whether cytopathologists or surgical pathologists should review such samples, and whether the pathology findings should be reported together or separately.
    METHODS: In December 2021, the American Society of Cytopathology convened the Re-Imagine Cytopathology Task Force to examine various workflows that would facilitate unified pathology reporting of concurrently obtained biopsies and improve clinical care.
    CONCLUSIONS: This position paper summarizes the key points and highlights the advantages, challenges, and resources available to support the implementation of such workflows that result in \"one procedure-one report\".
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  • 文章类型: Journal Article
    在这项研究中,我们对西班牙加那利群岛(PTR-CA)的宠物肿瘤登记处进行了全面分析,以调查犬皮肤圆形细胞肿瘤的流行病学。从2003年至2020年收集的2526个肿瘤的数据库中,我们对诊断的主要趋势进行了纵向分析,年龄,多重性和解剖分布以及病例对照研究,将这些病例与加那利群岛的同期犬类种群进行比较,以分析品种分布。根据以前的研究,我们发现组织细胞瘤主要影响幼犬(2,IQR1-5),肥大细胞瘤影响中老年犬(8,IQR6-10),1级影响年龄较小(6.5,IQR6-8)的2级(8,IQR6-10岁)和3级(9,IQR7-11).组织细胞瘤和浆细胞瘤表现出相似的解剖分布,主要出现在面部,头部和颈部区域,而肥大细胞肿瘤主要发生在四肢和躯干。与斗牛犬相关的品种如Boxer(ORMCT=23.61,CI95%:19.12-29.15,ORHCT=10.17,CI95%:6.60-15.67),波士顿梗(ORMCT19.47,CI95%:7.73-49.05,ORHCT32.61,CI95%:11.81-90.07)和帕格(ORMCT8.10,CI95%:5.92-11.07,ORHCT7.87,CI95%:4.66-13.28),而奇瓦瓦犬的风险明显降低(ORMCT0.18,CI95%:0.09-0.41,0.值得注意的是,Canarianmast,一个当地的品种,患肥大细胞瘤的风险较低,这引发了一个问题,即这是否与该品种的遗传特性或某些饲养和环境因素有关。
    In this study we undertook a comprehensive analysis of a Pet Tumour Registry of the Canary Archipelago (PTR-CA) in Spain to investigate the epidemiology of canine cutaneous round cell tumours. From a database of 2526 tumours collected from 2003 to 2020, we conducted a longitudinal analysis of the main trends in diagnosis, age, multiplicity and anatomical distribution as well as a case-control study comparing these cases with the contemporaneous canine population of the Canary Archipelago to analyse breed distribution. In line with former studies, we found histiocytomas mostly affect young dogs (2, IQR 1-5) and mast cell tumours affect middle-to-old dogs (8, IQR 6-10) with grade 1 affecting at younger ages (6.5, IQR 6-8) than both grade 2 (8, IQR 6-10 years) and grade 3 (9, IQR 7-11). Histiocytomas and plasmacytomas showed a similar anatomical distribution appearing mainly on the face, head and neck regions while mast cell tumours occur mainly on limbs and trunk. Higher risk for mast cell tumours and histiocytomas were found for Bulldog-related breeds such as Boxer (ORMCT  = 23.61, CI95%: 19.12-29.15, ORHCT  = 10.17, CI95%: 6.60-15.67), Boston Terrier (ORMCT 19.47, CI95%: 7.73-49.05, ORHCT 32.61, CI95%: 11.81-90.07) and Pug (ORMCT 8.10, CI95%: 5.92-11.07, ORHCT 7.87, CI95%: 4.66-13.28) while Chihuahua dogs showed significantly less risk (ORMCT 0.18, CI95%: 0.09-0.33, ORHCT 0.41, CI95%: 0.21-0.78). Notably, the Canarian Mastiff, a local breed, had a low risk of suffering from a mast cell tumour which raises the question of whether this relates to a genetic peculiarity of this breed or some husbandry and environmental factor.
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  • 文章类型: Journal Article
    第一版“胃癌标准化病理学报告”由韩国病理学学会胃肠道病理学研究小组发起,并于17年前出版。从那以后,在病理诊断方面取得了重大进展,分子遗传学,和胃癌(GC)的管理。为了反映这些变化,在韩国病理学家学会的胃肠道病理学研究组内成立了一个委员会来发表该报告的第二版.第二版由两部分组成:标准数据元素和条件数据元素。标准数据元素包含基本病理结果和预测GC患者预后所必需的项目。它们足以进行常规的手术病理服务。与辅助治疗相关的其他诊断和预后因素,包括分子生物标志物,被分类为条件数据元素,以允许每个病理学家选择性地选择适合其机构环境的项目。我们相信标准化的病理报告将有助于GC诊断并促进大规模的多学科合作研究。
    The first edition of \'A Standardized Pathology Report for Gastric Cancer\' was initiated by the Gastrointestinal Pathology Study Group of the Korean Society of Pathologists and published 17 years ago. Since then, significant advances have been made in the pathologic diagnosis, molecular genetics, and management of gastric cancer (GC). To reflect those changes, a committee for publishing a second edition of the report was formed within the Gastrointestinal Pathology Study Group of the Korean Society of Pathologists. This second edition consists of two parts: standard data elements and conditional data elements. The standard data elements contain the basic pathologic findings and items necessary to predict the prognosis of GC patients, and they are adequate for routine surgical pathology service. Other diagnostic and prognostic factors relevant to adjuvant therapy, including molecular biomarkers, are classified as conditional data elements to allow each pathologist to selectively choose items appropriate to the environment in their institution. We trust that the standardized pathology report will be helpful for GC diagnosis and facilitate large-scale multidisciplinary collaborative studies.
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  • 文章类型: Journal Article
    第一版“胃癌标准化病理学报告”由韩国病理学学会胃肠道病理学研究小组发起,并于17年前出版。从那以后,在病理诊断方面取得了重大进展,分子遗传学,和胃癌(GC)的管理。为了反映这些变化,在韩国病理学家学会的胃肠道病理学研究组内成立了一个委员会来发表该报告的第二版.第二版由两部分组成:标准数据元素和条件数据元素。标准数据元素包含基本病理结果和预测GC患者预后所必需的项目。它们足以进行常规的手术病理服务。与辅助治疗相关的其他诊断和预后因素,包括分子生物标志物,被分类为条件数据元素,以允许每个病理学家选择性地选择适合其机构环境的项目。我们相信标准化的病理报告将有助于GC诊断并促进大规模的多学科合作研究。
    The first edition of \'A Standardized Pathology Report for Gastric Cancer\' was initiated by the Gastrointestinal Pathology Study Group of the Korean Society of Pathologists and published 17 years ago. Since then, significant advances have been made in the pathologic diagnosis, molecular genetics, and management of gastric cancer (GC). To reflect those changes, a committee for publishing a second edition of the report was formed within the Gastrointestinal Pathology Study Group of the Korean Society of Pathologists. This second edition consists of two parts: standard data elements and conditional data elements. The standard data elements contain the basic pathologic findings and items necessary to predict the prognosis of GC patients, and they are adequate for routine surgical pathology service. Other diagnostic and prognostic factors relevant to adjuvant therapy, including molecular biomarkers, are classified as conditional data elements to allow each pathologist to selectively choose items appropriate to the environment in their institution. We trust that the standardized pathology report will be helpful for GC diagnosis and facilitate large-scale multidisciplinary collaborative studies.
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