蝙蝠体内含有多种病毒。RNA病毒家族副粘病毒科倾向于感染几种脊椎动物,对人类和动物的各种破坏性感染负责。这种病毒包括麻疹,腮腺炎,还有Hendra.在基因到蛋白质合成过程中,mRNAs中的一些同义密码子比其他密码子更受青睐。这种现象称为密码子使用偏倚(CUB)。我们的研究强调了在蝙蝠中发现的副粘病毒科基因CUB的许多方面。这里,含氮碱基A发生的最多。发现AT在副粘病毒科的编码序列中丰富。RSCU数据显示,A或T结尾密码子的发生频率高于预期。此外,3个代表过多的密码子(CAT,AGA,和GCA)和7个代表性不足的密码子(CCG,TCG,CGC,CGG,CGT,在病毒基因组中检测到GCG和ACG)。对应分析,中立情节,和平价图突出了突变压力和自然选择对CUB的综合影响。GC12对GC3的中性图产生0.366的回归系数值,表明自然选择具有显著(63.4%)影响。此外,RNA编辑分析完成,这揭示了C到T突变的最高频率。我们的研究结果揭示了副粘病毒科基因组中密码子使用和RNA编辑位点的模式。
Bats contain a diverse spectrum of viral species in their bodies. The RNA virus family
Paramyxoviridae tends to infect several vertebrate species, which are accountable for a variety of devastating infections in both humans and animals. Viruses of this kind include measles, mumps, and Hendra. Some synonymous codons are favoured over others in mRNAs during gene-to-protein synthesis process. Such phenomenon is termed as codon usage bias (CUB). Our research emphasized many aspects that shape the CUB of genes in the
Paramyxoviridae family found in bats. Here, the nitrogenous base A occurred the most. AT was found to be abundant in the coding sequences of the
Paramyxoviridae family. RSCU data revealed that A or T ending codons occurred more frequently than predicted. Furthermore, 3 overrepresented codons (CAT, AGA, and GCA) and 7 underrepresented codons (CCG, TCG, CGC, CGG, CGT, GCG and ACG) were detected in the viral genomes. Correspondence analysis, neutrality plot, and parity plots highlight the combined impact of mutational pressure and natural selection on CUB. The neutrality plot of GC12 against GC3 yielded a regression coefficient value of 0.366, indicating that natural selection had a significant (63.4 %) impact. Moreover, RNA editing analysis was done, which revealed the highest frequency of C to T mutations. The results of our research revealed the pattern of codon usage and RNA editing sites in
Paramyxoviridae genomes.