Panthera

Panthera
  • 文章类型: Journal Article
    了解易位豹子(Pantherapardusfusca)的空间生态对于其保护和有效评估冲突管理策略至关重要。我们调查了Gir景观中五只放射性豹子(n=5;2只雄性;3只雌性)的家庭范围和栖息地偏好。此外,我们研究了捕获-释放策略对这些动物的有用性.我们使用核密度估计(95%和50%水平)和成分分析评估了家庭范围和栖息地选择。我们的发现表明豹子表现出不同的运动模式,通常在3至25天内返回其原始捕获地点或附近地点或探索新区域,覆盖范围从48到260公里。平均家庭范围(95%FK)估计为103.96±36.37(SE)km2,核心区使用率(50%FK)为21.38±5.95km2。季节性,我们在夏季观察到最大的家庭范围,在冬季观察到最小的家庭范围。男性表现出更大的家庭范围(95%FK,151±64.28km2),而女性(56.18±14.22km2)。栖息地分析表明,在二阶栖息地选择级别的多用途景观中,农业区始终是首选。此外,水体周围的栖息地在第三顺序受到高度青睐,白天和黑夜观察到栖息地选择的明显变化。这项研究强调了河流和灌木丛栖息地的重要性,因为豹子在他们的家庭范围内表现出对这些栖息地的强烈偏好。我们强调保护自然栖息地斑块的重要性,特别是那些周围的水体。我们还报告了捕获释放策略的特征,并提供了我们的观察结果,表明豹子在释放后没有升级侵略。总之,这项研究评估了广泛采用的缓解冲突的方法,并建议对缓解人豹冲突的管理策略进行持续审查和评估。
    Understanding the spatial ecology of translocated leopards (Panthera pardus fusca) is crucial for their conservation and the effective assessment of conflict management strategies. We investigated the home range and habitat preferences of five radio-collared leopards (n = 5; 2 males; 3 females) in the Gir landscape. Additionally, we examined the usefulness of the capture-release strategy for these animals. We assessed home range and habitat selection using kernel density estimation (at 95% and 50% levels) and compositional analysis. Our findings revealed that leopards exhibited distinct patterns of movement, often returning to their original capture site or nearby locations or exploring new areas within 3 to 25 days, covering distances ranging from 48 to 260 km. The average home range (95% FK) was estimated at 103.96±36.37 (SE) km2, with a core area usage (50% FK) of 21.38±5.95 km2. Seasonally, we observed the largest home ranges during summer and the smallest during winter. Males exhibited larger home ranges (95% FK, 151±64.28 km2) compared to females (56.18±14.22 km2). The habitat analysis indicated that agricultural areas were consistently preferred in the multi-use landscape at the 2nd order habitat selection level. Additionally, habitat around water bodies was highly favoured at the 3rd order, with distinct variations in habitat selection observed during day and night. This study highlights the significance of riverine and scrubland habitats, as leopards exhibited strong preferences for these habitats within their home ranges. We emphasize the importance of conserving natural habitat patches, particularly those surrounding water bodies. We also report on the characteristics of the capture-release strategy and provide our observations indicating no escalated aggression by leopards\' post-release. In conclusion, this study evaluates widely employed approaches to conflict mitigation and suggests the continuous review and assessment of management strategies for mitigating human-leopard conflicts.
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  • 文章类型: Journal Article
    人与野生动物冲突(HWC)是全球范围内的紧迫问题,但因物种而异。尼泊尔中部山区最普遍的HWC形式之一是人类共同豹冲突(HLC)。豹子攻击,尤其是在森林地区,会严重影响村民和他们的牲畜。Gorkha区的HLC信息很少,从而使其成为识别与此类事件相关的高风险区域和景观变量的理想位置。在2019-2021年期间,从林业局(DFO)收集并审查了注册病例。通过八次焦点小组讨论,与牧民和村民确认了DFO记录的索赔。为了提高建模成功率,研究人员确定了总共163个豹子袭击牲畜的地点,确保位置之间至少100米的最小距离。使用最大熵(MaxEnt)并考虑13个环境变量,我们绘制了常见的豹子攻击危险区域。使用真实技能统计(TSS)和接受者-操作者曲线下面积(AUC)来评估和验证输出。此外,10次重复,最大1,000次迭代,建模过程中使用了1000个背景点。模型的平均AUC值,为0.726±0.021,显示出良好的准确性。该模型表现良好,如TSS值为0.61±0.03所示。在总研究面积(27.92km2)中,约74%被指定为低风险区域,19%为中等风险区域,7%为高风险区域。在13个环境变量中,与水的距离(25.2%)是最显著的风险预测因子,其次是到道路的距离(16.2%)和海拔(10.7%)。根据响应曲线,在距水源1.5至2公里的地区,普通豹子的风险最高,其次是距离道路最近的距离,海拔700至800m。结果表明,管理人员和地方政府应立即采取干预策略,以保障高风险地区的农村生计。改进包括更好的牲畜畜栏设计,保险,和牲畜损失的全部赔偿。道路和水源附近的定居点应改进围栏和笼子的设计和建造,以防止牲畜损失。建议对受害者的特征进行更多研究,以增进对常见豹子袭击的了解,除了景观变量。这些信息有助于制定最佳管理实践。
    Human-wildlife conflict (HWC) is a pressing issue worldwide but varies by species over time and place. One of the most prevalent forms of HWC in the mid-hills of Nepal is human-common-leopard conflict (HLC). Leopard attacks, especially in forested areas, can severely impact villagers and their livestock. Information on HLC in the Gorkha district was scarce, thus making it an ideal location to identify high-risk zones and landscape variables associated with such events. Registered cases were collected and reviewed from the Division Forest Office (DFO) during 2019-2021. Claims from DFO records were confirmed with herders and villagers via eight focus group discussions. To enhance modeling success, researchers identified a total of 163 leopard attack locations on livestock, ensuring a minimum distance of at least 100 meters between locations. Using maximum entropy (MaxEnt) and considering 13 environmental variables, we mapped common leopard attack risk zones. True Skill Statistics (TSS) and area under receiver-operator curve (AUC) were used to evaluate and validate the Output. Furthermore, 10 replications, 1,000 maximum iterations, and 1000 background points were employed during modeling. The average AUC value for the model, which was 0.726 ± 0.021, revealed good accuracy. The model performed well, as indicated by a TSS value of 0.61 ± 0.03. Of the total research area (27.92 km2), about 74% was designated as a low-risk area, 19% as a medium-risk area, and 7% as a high-risk area. Of the 13 environmental variables, distance to water (25.2%) was the most significant predictor of risk, followed by distance to road (16.2%) and elevation (10.7%). According to response curves, the risk of common leopard is highest in the areas between 1.5 to 2 km distances from the water sources, followed by the closest distance from a road and an elevation of 700 to 800 m. Results suggest that managers and local governments should employ intervention strategies immediately to safeguard rural livelihoods in high-risk areas. Improvements include better design of livestock corrals, insurance, and total compensation of livestock losses. Settlements near roads and water sources should improve the design and construction of pens and cages to prevent livestock loss. More studies on the characteristics of victims are suggested to enhance understanding of common leopard attacks, in addition to landscape variables. Such information can be helpful in formulating the best management practices.
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  • 文章类型: Journal Article
    大型猫科动物的不可持续贸易影响到该属的所有物种,Panthera,并且是对其保护的最大威胁之一。为了进一步了解旨在解决这一问题的政策干预措施的影响,我们研究了大韩民国(韩国)的案例研究,在20世纪90年代初,它是世界上最大的老虎(Pantheratigris)骨头进口国之一,也是老虎衍生药品的主要制造商。1993年,韩国成为《濒危物种国际贸易公约》(CITES)的缔约国,并在一年后在CITES附录I列出的大型猫科动物中禁止商业贸易。我们使用了基于专家的问卷调查和对CITES贸易数据库的探索,以调查此后韩国大型猫贸易的情况。专家意见表明,自1990年代初以来,大型猫科动物的贸易可能会大幅减少,由于贸易禁令和广泛的社会经济变化。然而,非法贸易尚未完全根除,我们能够证实,据报道,来自大型猫科动物的产品仍然可以在一系列韩国在线市场上公开销售,有时公开。受访者最常报告的项目来自1994年后的贸易,并得到专家主导证据的支持是老虎和豹子(Pantherapardus)皮肤和老虎骨酒。尽管韩国可能会提供一个有用的案例研究,一个具有历史意义的老虎消费国,在短时间内解决不可持续的大型猫贸易方面取得了重大进展,仍然需要解决顽固的小规模问题,非法贸易。我们还建议进一步调查有关韩国国民参与东南亚老虎衍生产品非法贸易的报道。
    Unsustainable trade in big cats affects all species in the genus, Panthera, and is one of the foremost threats to their conservation. To provide further insight into the impact of policy interventions intended to address this issue, we examine the case study of the Republic of Korea (South Korea), which in the early 1990s was one of the world\'s largest importers of tiger (Panthera tigris) bone and a major manufacturer of tiger-derived medicinal products. In 1993, South Korea became a Party to the Convention on International Trade in Endangered Species (CITES) and introduced a ban on commercial trade in CITES Appendix I-listed big cats a year later. We used an expert-based questionnaire survey and an exploration of the CITES trade database to investigate what has since happened to big cat trade in South Korea. Expert opinion suggested that big cat trade has likely substantially reduced since the early 1990s, as a result of the trade ban and broad socioeconomic changes. However, illegal trade has not been eradicated entirely and we were able to confirm that products reportedly derived from big cats were still publicly available for sale on a range of Korean online marketplaces, sometimes openly. The items most commonly reported by respondents from post-1994 trade and supported by expert-led evidence were tiger and leopard (Panthera pardus) skins and tiger bone wine. Although South Korea may provide a useful case study of a historically significant consumer country for tiger which has made strong progress in addressing unsustainable levels of big cat trade within a short period of time, there remains a need to address recalcitrant small-scale, illegal trade. We also recommend further investigation regarding reports of South Korean nationals being involved in illegal trade in tiger-derived products in Southeast Asia.
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  • 文章类型: Journal Article
    头发是涉及哺乳动物的野生动植物犯罪中常见的痕迹证据,可用于物种鉴定,这对于随后的司法程序至关重要。这项概念验证研究的目的是,为了区分属于Panthera属的三种野猫的黑卫毛,即皇家孟加拉虎(Pantheratigristigris),印度豹(Pantherapardusfusca),和雪豹(Pantherauncia)使用快速,无损的ATR-FTIR光谱技术与化学计量学相结合。使用包括三个物种的72个黑卫士毛发样品(来自每个物种的24个样品)的训练数据集来构建化学计量模型。PLS2-DA模型成功地将这三个物种分为不同的类别,R平方值为0.9985(校准)和0.8989(验证)。还计算了VIP得分,使用VIP评分≥1的变量构建新的PLS2DA-V模型。使用包括18个黑护发样品(每个物种6个样品)的验证数据集进行外部验证,以验证构建的PLS2-DA模型。观察到在交叉验证和外部验证期间,与PLS2DA-V模型相比,PLS2-DA模型提供了更高的准确度和精确度。开发的PLS2-DA模型还成功地区分了人类和非人类的头发,R-Square值为0.99和0.91,用于校准和验证。分别。除此之外,还使用10个未知的头发样品进行了盲测试,这些样品被正确地分类到它们各自的类别中,从而提供100%的准确性。这项研究强调了ATR-FTIR光谱与PLS-DA相关的优势,用于区分和鉴定皇家孟加拉虎,印度豹,雪豹在一个快速的头发,准确,环保,非破坏性的方式。
    Hair is a commonly encountered trace evidence in wildlife crimes involving mammals and can be used for species identification which is essential for subsequent judicial proceedings. This proof of concept study aims, to distinguish the black guard hair of three wild cat species belonging to the genus Panthera i.e. Royal Bengal Tiger (Panthera tigris tigris), Indian Leopard (Panthera pardus fusca), and Snow Leopard (Panthera uncia) using a rapid and non-destructive ATR-FTIR spectroscopic technique in combination with chemometrics. A training dataset including 72 black guard hair samples of three species (24 samples from each species) was used to construct chemometric models. A PLS2-DA model successfully classified these three species into distinct classes with R-Square values of 0.9985 (calibration) and 0.8989 (validation). VIP score was also computed, and a new PLS2DA-V model was constructed using variables with a VIP score ≥ 1. External validation was performed using a validation dataset including 18 black guard hair samples (6 samples per species) to validate the constructed PLS2-DA model. It was observed that PLS2-DA model provides greater accuracy and precision compared to the PLS2DA-V model during cross-validation and external validation. The developed PLS2-DA model was also successful in differentiating human and non-human hair with R-Square values of 0.99 and 0.91 for calibration and validation, respectively. Apart from this, a blind test was also carried out using 10 unknown hair samples which were correctly classified into their respective classes providing 100 % accuracy. This study highlights the advantages of ATR-FTIR spectroscopy associated with PLS-DA for differentiation and identification of the Royal Bengal Tiger, Indian Leopard, and Snow Leopard hairs in a rapid, accurate, eco-friendly, and non-destructive way.
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  • 文章类型: Journal Article
    大肠杆菌是一种重要的肠道菌群,其中致病性大肠杆菌能够引起许多肠道和肠外疾病。抗生素对于治疗由致病性大肠杆菌引起的细菌感染至关重要;然而,随着抗生素的广泛使用,大肠杆菌的耐药性变得尤为严重,对人类构成全球性威胁,动物,和环境健康。近年来对圈养虎豹携带的大肠杆菌的耐药性和致病性进行了深入的研究,在野生环境中,这些顶级捕食者的大肠杆菌信息极度缺乏。
    从野生阿穆尔虎(Pantheratigrisaltaica,n=24)和华北豹(Pantherapardusjaponensis,n=8)进行了分析。多位点序列类型,血清型,毒力和抗性基因型,质粒复制子类型,并研究了这些分离株的核心基因组SNP系统发育。此外,对这些大肠杆菌分离株进行了抗菌药物敏感性试验(AST).
    在研究的大肠杆菌分离株中,鉴定出18种不同的序列类型,ST939(21.9%),ST10(15.6%),和ST3246(9.4%)是最普遍的。共检测到111个毒力基因,平均每个样本约54个毒力基因。它们有助于入侵,坚持,免疫逃避,外排泵,毒素,运动性,应力适应,和大肠杆菌的其他毒力相关功能。鉴定了68个AMR基因和点突变。在检测到的抗性基因中,那些属于外排泵家族的是最丰富的。32株大肠杆菌对四环素耐药率最高(14/32;43.8%),其次是亚胺培南(4/32;12.5%),环丙沙星(3/32;9.4%),多西环素(2/32;6.3%),和诺氟沙星(1/32;3.1%)。
    我们的结果表明,野生东北虎和华北豹携带的大肠杆菌分离株具有潜在的致病性和耐药性。
    UNASSIGNED: Escherichia coli is an important intestinal flora, of which pathogenic E. coli is capable of causing many enteric and extra-intestinal diseases. Antibiotics are essential for the treatment of bacterial infections caused by pathogenic E. coli; however, with the widespread use of antibiotics, drug resistance in E. coli has become particularly serious, posing a global threat to human, animal, and environmental health. While the drug resistance and pathogenicity of E. coli carried by tigers and leopards in captivity have been studied intensively in recent years, there is an extreme lack of information on E. coli in these top predators in the wild environment.
    UNASSIGNED: Whole genome sequencing data of 32 E. coli strains collected from the feces of wild Amur tiger (Panthera tigris altaica, n = 24) and North China leopard (Panthera pardus japonensis, n = 8) were analyzed in this article. The multi-locus sequence types, serotypes, virulence and resistance genotypes, plasmid replicon types, and core genomic SNPs phylogeny of these isolates were studied. Additionally, antimicrobial susceptibility testing (AST) was performed on these E. coli isolates.
    UNASSIGNED: Among the E. coli isolates studied, 18 different sequence types were identified, with ST939 (21.9%), ST10 (15.6%), and ST3246 (9.4%) being the most prevalent. A total of 111 virulence genes were detected, averaging about 54 virulence genes per sample. They contribute to invasion, adherence, immune evasion, efflux pump, toxin, motility, stress adaption, and other virulence-related functions of E. coli. Sixty-eight AMR genes and point mutations were identified. Among the detected resistance genes, those belonging to the efflux pump family were the most abundant. Thirty-two E. coli isolates showed the highest rate of resistance to tetracycline (14/32; 43.8%), followed by imipenem (4/32; 12.5%), ciprofloxacin (3/32; 9.4%), doxycycline (2/32; 6.3%), and norfloxacin (1/32; 3.1%).
    UNASSIGNED: Our results suggest that E. coli isolates carried by wild Amur tigers and North China leopards have potential pathogenicity and drug resistance.
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  • 文章类型: Journal Article
    保护区传统上是保护战略的基础,但是,由于大型食肉动物通常具有广泛的性质,因此未得到正式保护的土地对于保护大型食肉动物尤为重要。在南非,豹子(Pantherapardus)的种群减少被认为发生在人类发展和强烈的负面互动领域,但是研究偏向于保护区,严重缺乏关于非保护区人口规模和趋势的定量信息。使用空间显式捕获-重新捕获和占用技术,包括10个环境和人为协变量,我们分析了来自南非商业农田的相机陷阱数据,据报道,人类与野生动植物的负面相互作用很高。我们的发现表明,豹子在中等密度(2.21/100km2)下持续存在,并且在实施致命控制措施的地区表现出回避的迹象。这表明豹子有可能有效地驾驭混合马赛克景观,提高他们长期生存和与人类共存的机会。包括农作物在内的农业混合马赛克,应该鼓励野味和畜牧业,提供致命的控制在景观中并不普遍存在,更安全的空间链应该允许重要的景观连通性。然而,继续推广非致命缓解技术仍然至关重要。
    Protected areas are traditionally the foundation of conservation strategy, but land not formally protected is of particular importance for the conservation of large carnivores because of their typically wide-ranging nature. In South Africa, leopard (Panthera pardus) population decreases are thought to be occurring in areas of human development and intense negative interactions, but research is biased towards protected areas, with quantitative information on population sizes and trends in non-protected areas severely lacking. Using Spatially Explicit Capture-Recapture and occupancy techniques including 10 environmental and anthropogenic covariates, we analysed camera trap data from commercial farmland in South Africa where negative human-wildlife interactions are reported to be high. Our findings demonstrate that leopards persist at a moderate density (2.21 /100 km2) and exhibit signs of avoidance from areas where lethal control measures are implemented. This suggests leopards have the potential to navigate mixed mosaic landscapes effectively, enhancing their chances of long-term survival and coexistence with humans. Mixed mosaics of agriculture that include crops, game and livestock farming should be encouraged and, providing lethal control is not ubiquitous in the landscape, chains of safer spaces should permit vital landscape connectivity. However, continuing to promote non-lethal mitigation techniques remains vital.
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  • 文章类型: Journal Article
    非洲豹(Pantheraparduspardus)已经失去了其历史范围的很大一部分,尤其是在非洲西北部和南非。最近的研究探索了整个非洲大陆非洲豹的遗传多样性和种群结构。一个值得注意的遗传观察是存在两个不同的线粒体谱系,PAR-I和PAR-II。这两个谱系似乎分布广泛,在南部非洲经常发现PAR-II。直到现在,没有研究试图指出这两种谱系的出现,评估单倍型分布,或者详细探索它们的进化史.为了调查这些被低估的问题,我们编制了迄今为止线粒体NADH-5基因的最大和最具地理代表性的豹子数据集.我们合并了在南非Mpumalanga省的海拔剖面中收集的样本(n=33),已知有两个豹子种群有遗传联系,与先前发表的非洲豹序列(n=211)。我们估计,母体PAR-I和PAR-II谱系在百万年前(Ma)约为0.7051(0.4477-0.9632)。通过空间和人口分析,我们表明,虽然PAR-I经历了中更新世种群扩张,导致了几个密切相关的单倍型,在其大部分范围内几乎没有地理结构,PAR-II保持恒定大小,甚至可能在最近0.1Ma中略有下降。在PAR-II中经历的更高的遗传漂移驱动了更大程度的结构,在中部非洲几乎没有单倍型共享和独特的单倍型,海角,夸祖鲁-纳塔尔省和南非海维尔德省。PAR-II的系统地理结构,随着向南的频率越来越高,它只发生在南非东南部,表明该谱系可能在更新世中期在南非被孤立。这一假设得到了古气候历史变化的支持,这些变化促进了林波波盆地周围1.0-0.6Ma之间的强烈干旱化,可能减少基因流动并促进遗传漂移。有趣的是,我们确定,通过先前的研究确定为东和西姆普马兰加的两个核DNA种群对应于PAR-I和PAR-II,分别,他们已经在南非的Lowveld地区进行了二次接触。我们的结果表明,非洲豹mtDNA细分为两个进化枝,其中一个几乎完全发生在南非,我们确定了这个观察到的结构的潜在环境驱动因素。我们提醒我们的结果是基于单个mtDNA基因座,但它提供了一个可以用密集的核DNA数据样本进一步检验的假设,最好是全基因组。如果我们的解释成立,它将为非洲最南端观察到的豹子尺寸较小提供第一个遗传解释。
    The African leopard (Panthera pardus pardus) has lost a significant proportion of its historical range, notably in north-western Africa and South Africa. Recent studies have explored the genetic diversity and population structure of African leopards across the continent. A notable genetic observation is the presence of two divergent mitochondrial lineages, PAR-I and PAR-II. Both lineages appeared to be distributed widely, with PAR-II frequently found in southern Africa. Until now, no study has attempted to date the emergence of either lineage, assess haplotype distribution, or explore their evolutionary histories in any detail. To investigate these underappreciated questions, we compiled the largest and most geographically representative leopard data set of the mitochondrial NADH-5 gene to date. We combined samples (n = 33) collected in an altitudinal transect across the Mpumalanga province of South Africa, where two populations of leopard are known to be in genetic contact, with previously published sequences of African leopard (n = 211). We estimate that the maternal PAR-I and PAR-II lineages diverged approximately 0.7051 (0.4477-0.9632) million years ago (Ma). Through spatial and demographic analyses, we show that while PAR-I underwent a mid-Pleistocene population expansion resulting in several closely related haplotypes with little geographic structure across much of its range, PAR-II remained at constant size and may even have declined slightly in the last 0.1 Ma. The higher genetic drift experienced within PAR-II drove a greater degree of structure with little haplotype sharing and unique haplotypes in central Africa, the Cape, KwaZulu-Natal and the South African Highveld. The phylogeographic structure of PAR-II, with its increasing frequency southward and its exclusive occurrence in south-eastern South Africa, suggests that this lineage may have been isolated in South Africa during the mid-Pleistocene. This hypothesis is supported by historical changes in paleoclimate that promoted intense aridification around the Limpopo Basin between 1.0-0.6 Ma, potentially reducing gene flow and promoting genetic drift. Interestingly, we ascertained that the two nuclear DNA populations identified by a previous study as East and West Mpumalanga correspond to PAR-I and PAR-II, respectively, and that they have come into secondary contact in the Lowveld region of South Africa. Our results suggest a subdivision of African leopard mtDNA into two clades, with one occurring almost exclusively in South Africa, and we identify the potential environmental drivers of this observed structure. We caution that our results are based on a single mtDNA locus, but it nevertheless provides a hypothesis that can be further tested with a dense sample of nuclear DNA data, preferably whole genomes. If our interpretation holds true, it would provide the first genetic explanation for the smaller observed size of leopards at the southernmost end of their range in Africa.
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  • 文章类型: Journal Article
    孟加拉猫品种是由亚洲豹猫之间的杂交发展而来的,孟加拉Prionailurus,和家猫,FelisCatus,大约600万年前的最后一个共同祖先。预计94%的基因组来自家猫,豹猫基因组的区域被认为是孟加拉品种独特的毛皮特征和华丽的颜色模式,类似于豹子和美洲虎。我们通过使用947只猫的减少代表性和全基因组测序来探索孟加拉品种的祖先分布和选择特征。孟加拉品种中豹猫DNA的平均比例为3.48%,低于品种历史预测,分布广泛,覆盖了93%的孟加拉基因组。总的来说,豹猫的渗入在整个孟加拉品种中没有显示出强烈的选择特征。然而,孟加拉猫两种流行的颜色特征,木炭和pheomelanin强度,通过选择在家猫背景下表达降低的豹猫基因来解释,与杂交导致的遗传不相容性一致。我们描述了孟加拉基因组中的几个选择性扫描,这些扫描包含毛皮和颜色模式的候选基因,并且与家庭相关,而不是豹子,猫单倍型。我们将一个选择性扫描的分子和表型基础鉴定为Fgfr2基因的表达降低,这是闪光的基础,育种者所期望的影响头发质地和光反射率的特性。
    The Bengal cat breed was developed from intercrosses between the Asian leopard cat, Prionailurus bengalensis, and the domestic cat, Felis catus, with a last common ancestor approximately 6 million years ago. Predicted to derive ∼94% of their genome from domestic cats, regions of the leopard cat genome are thought to account for the unique pelage traits and ornate color patterns of the Bengal breed, which are similar to those of ocelots and jaguars. We explore ancestry distribution and selection signatures in the Bengal breed by using reduced representation and whole-genome sequencing from 947 cats. The mean proportion of leopard cat DNA in the Bengal breed is 3.48%, lower than predicted from breed history, and is broadly distributed, covering 93% of the Bengal genome. Overall, leopard cat introgressions do not show strong signatures of selection across the Bengal breed. However, two popular color traits in Bengal cats, charcoal and pheomelanin intensity, are explained by selection of leopard cat genes whose expression is reduced in a domestic cat background, consistent with genetic incompatibility resulting from hybridization. We characterize several selective sweeps in the Bengal genome that harbor candidate genes for pelage and color pattern and that are associated with domestic, rather than leopard, cat haplotypes. We identify the molecular and phenotypic basis of one selective sweep as reduced expression of the Fgfr2 gene, which underlies glitter, a trait desired by breeders that affects hair texture and light reflectivity.
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  • 文章类型: Journal Article
    美洲虎(Pantheraonca)是一种有魅力的物种,在哥伦比亚被认为是脆弱的,但在该国却鲜为人知。该物种主要受到其栖息地持续减少的威胁,主要源于森林砍伐和栖息地丧失,除了狩猎和与人类的冲突。因此,美洲虎在哥伦比亚的未来取决于保护和恢复现有的栖息地。这项研究的目的是1)评估美洲虎的分布并确定哥伦比亚栖息地的剩余斑块,2)在全国范围内定义一个生态连通网络,和3)提出保护和恢复美洲虎的优先领域组合。我们使用存在背景模型来估计物种潜在分布,随后根据土地覆盖和特定物种的生态属性确定了全国剩余的栖息地斑块。然后,我们基于电路理论并遵循多标准方法创建了生态连接网络,确定了美洲虎的优先保护区域(JPCA)和恢复区域(JPRA)。捷豹潜在分布为1103122.43km2,其中56.71%维持潜在栖息地的合适斑块。我们在自然或半自然植被的剩余斑块之间确定了960条走廊。根据标准,在哥伦比亚五个地区中的每个地区都确定了更重要的JPCA。JPRA主要位于安第斯和加勒比区域。这些JPCA和JPRA可以作为设计和实施哥伦比亚长期保护和恢复物种的管理策略的指南。
    The jaguar (Panthera onca) is a charismatic species considered Vulnerable in Colombia but yet largely unknown in the country. The species is mostly threatened by the continuous decline in its habitats, mostly derived from deforestation and habitat loss, additional to hunting and conflicts with humans. Thus, the future of jaguars in Colombia depends on protecting and recovering existing habitats. The aims of this study were to 1) evaluate jaguar distribution and identify the remnant patches of habitat in Colombia, 2) define an ecological connectivity network within the country, and 3) propose a priority areas portfolio for the conservation and recovery of jaguars. We used a presence background model for estimating species potential distribution and subsequently identified remaining habitat patches across the country based on land cover and species-specific ecological attributes. We then created an ecological connectivity network based on circuit theory and following a multi-criteria approach identified jaguar priority areas for conservation (JPCA) and recovery (JPRA). Jaguar potential distribution comprises 1103122.43 km2, from which 56.71% maintain suitable patches of potential habitat. We identified 960 corridors between remnant patches of natural or semi-natural vegetation. Based on the criteria, JPCAs with greater importance were identified in each of the five Colombian regions. JPRAs were located mainly towards the Andean and Caribbean regions. These JPCAs and JPRAs could serve as a guide for designing and implementing management strategies for the long-term conservation and recovery of the species in Colombia.
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