Newborn genetic screening

  • 文章类型: Journal Article
    听力损失是人类最普遍的神经感觉障碍,对语言有重大影响,社会和认知发展,如果不早期诊断和治疗。本系统综述和荟萃分析旨在确定听力筛查通过和遗传筛查失败[通用新生儿听力筛查(UNHS)通过/遗传失败]的发生率,并探讨将新生儿听力和遗传筛查相结合用于新生儿听力障碍的优势。PubMed,从开始到2023年9月搜索Embase和Cochrane数据库,以确定报告新生儿听力筛查与遗传筛查相结合的研究。重复的文献,未发表的文献,数据不完整的研究,动物实验,文献综述和系统研究被排除在外.所有数据均采用STATA15.1统计软件处理。本荟萃分析共纳入了9项横断面研究。样本量从1,716到180,469,共有377,688名参与者。汇总结果显示,通过UNHS而失败的遗传筛查的患病率为0.31%(95%CI,0.22-0.41%)。UNHS通过和间隙连接蛋白β2和溶质载体家族26成员4变异体筛选失败的患病率分别为0.01%(95%CI,0.00-0.02%)和0.00%(95%CI,0.00%),分别,而线粒体编码的12SRRNA变异体筛选失败和UNHS通过率为0.21%(95%CI,0.18-0.26%).联合筛查比纯听力筛查有显著优势,特别是在识别具有线粒体基因突变的新生儿方面,这些突变使他们对某些药物敏感。在临床实践中,决策者可以考虑实际情况,并利用新生儿听力和基因筛查相结合的好处进行早期诊断,早期咨询,和听力损失患者的早期干预。
    Hearing loss is the most prevalent neurosensory disorder in humans, with significant implications for language, social and cognitive development if not diagnosed and treated early. The present systematic review and meta-analysis aimed to determine the rate of hearing screening pass and genetic screening failure [universal newborn hearing screening (UNHS) pass/genetic failure] and to investigate the advantages of combining newborn hearing and genetic screening for newborn hearing impairment. The PubMed, Embase and Cochrane databases were searched from inception to September 2023 to identify studies reporting the combination of neonatal hearing screening with genetic screening. Duplicate literature, unpublished literature, studies with incomplete data, animal experiments, literature reviews and systematic studies were excluded. All the data were processed by STATA15.1 statistical software. A total of nine cross-sectional studies were included in this meta-analysis. The sample sizes ranged from 1,716 to 180,469, and there were a total of 377,688 participants. The pooled results revealed that the prevalence of passing the UNHS while failing genetic screening was 0.31% (95% CI, 0.22-0.41%). The prevalence of UNHS pass and gap junction protein beta 2 and solute carrier family 26 member 4 variant screen failure was 0.01% (95% CI, 0.00-0.02%) and 0.00% (95% CI, 0.00%), respectively, while the prevalence of mitochondrially encoded 12S RRNA variant screening failure and UNHS pass was 0.21% (95% CI, 0.18-0.26%). Combined screening has a significant advantage over pure hearing screening, especially in terms of identifying newborns with mitochondrial gene mutations that render them sensitive to certain medications. In clinical practice, decision-makers can consider practical circumstances and leverage the benefits of combined newborn hearing and genetic screening for early diagnosis, early counseling, and early intervention in patients with hearing loss.
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  • 文章类型: Journal Article
    同时筛查已被证明为先天性耳聋的管理和耳毒性的预防提供了一种全面的方法。SLC26A4基因与迟发性听力损失相关,临床上备受关注。对于在SLC26A4基因中发现引起耳聋的突变的新生儿,北京市政府推出了一个芯片,用于对4个导致耳聋的基因的15个变异进行优化基因筛选,以筛选4个基因的9个变异,现在已经添加了SLC26A4基因的6种变体。为了确定包括4个基因的15个变体的筛选芯片的优势,分析了2019年和2020年听力和遗传筛查的趋势.受试者为76,460名新生儿,从2019年1月至2020年12月在北京24个妇幼保健中心同时接受听力和遗传筛查。使用瞬时诱发耳声发射(TEOAE)进行听力筛查,失真产物耳声发射(DPOAE),或自动听觉脑干反应(AABR)。采集干血斑进行基因检测和4个基因的15个变异,即GJB2,SLC26A4,mtDNA12SrRNA,使用DNA微阵列平台筛选GJB3。听力筛查的初始转诊率从2019年的3.60%(1,502/41,690)下降到2020年的3.23%(1,124/34,770),听力筛查的总转诊率从2019年的0.57%(236/41,690)下降到2020年的0.54%(187/34,770),这表明新生儿听力筛查的假阳性率降低和北京市政府实施的预防听力损失政策产生了显着效果根据基因筛查的阳性率在2019年相似(4.970%,2,072/41,690)和2020(4.863%,1,691/34,770),最常见的突变等位基因是GJB2基因中的c.235delC,其次是c.919-2A>G在SLC26A4基因,以及GJB2基因中的c.299delAT。在这项队列研究中,71.43%(5/7)具有SLC26A4基因2个变异体的新生儿进行了新增加突变的筛查,28.57%(2/7)的SLC26A4基因2个变异体新生儿通过听力筛查,这表明,包括4个基因的15个变体的筛选芯片在早期发现听力损失方面是优越的,尤其是在SLC26A4基因突变导致耳聋的新生儿的早期鉴定中。这些发现具有临床意义。
    Concurrent screening has been proven to provide a comprehensive approach for management of congenital deafness and prevention of ototoxicity. The SLC26A4 gene is associated with late-onset hearing loss and is of great clinical concern. For much earlier detection of newborns with deafness-causing mutations in the SLC26A4 gene, the Beijing Municipal Government launched a chip for optimized genetic screening of 15 variants of 4 genes causing deafness based on a chip to screen for 9 variants of 4 genes, and 6 variants of the SLC26A4 gene have now been added. To ascertain the advantage of a screening chip including 15 variants of 4 genes, the trends in concurrent hearing and genetic screening were analyzed in 2019 and 2020. Subjects were 76,460 newborns who underwent concurrent hearing and genetic screening at 24 maternal and child care centers in Beijing from January 2019 to December 2020. Hearing screening was conducted using transiently evoked otoacoustic emissions (TEOAEs), distortion product otoacoustic emissions (DPOAE), or the automated auditory brainstem response (AABR). Dried blood spots were collected for genetic testing and 15 variants of 4 genes, namely GJB2, SLC26A4, mtDNA 12S rRNA, and GJB3, were screened for using a DNA microarray platform. The initial referral rate for hearing screening decreased from 3.60% (1,502/41,690) in 2019 to 3.23% (1,124/34,770) in 2020, and the total referral rate for hearing screening dropped form 0.57% (236/41,690) in 2019 to 0.54% (187/34,770) in 2020, indicating the reduced false positive rate of newborn hearing screening and policies to prevent hearing loss conducted by the Beijing Municipal Government have had a significant effect. Positivity according to genetic screening was similar in 2019 (4.970%, 2,072/41,690) and 2020 (4.863%,1,691/34,770), and the most frequent mutant alleles were c.235 del C in the GJB2 gene, followed by c.919-2 A > G in the SLC26A4 gene, and c.299 del AT in the GJB2 gene. In this cohort study, 71.43% (5/7) of newborns with 2 variants of the SLC26A4 gene were screened for newly added mutations, and 28.57% (2/7) of newborns with 2 variants of the SLC26A4 gene passed hearing screening, suggesting that a screening chip including 15 variants of 4 genes was superior at early detection of hearing loss, and especially in early identification of newborns with deafness-causing mutations in the SLC26A4 gene. These findings have clinical significance.
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  • 文章类型: Journal Article
    未经评估:要了解知识,态度,意愿,以及在新生儿筛查(NBS)中心工作的医疗保健专业人员关于新生儿基因筛查(nGS)的能力。
    UNASSIGNED:问卷由四个部分组成,共27个问题,数据由WJX平台收集。所有参与者都通过用手机扫描特定的QR码来访问问卷。两名研究者独立完成了总结和分析。
    UNASSIGNED:从中国东南六个省的43个国家统计局中心收集了258份有效问卷。总的来说,209名(81.01%)参与者对NGS感兴趣,几乎所有参与者(97.67%)都认为NGS在中国是必要的。大约89.53%的参与者认为它可以用来有效地扩大可以筛查的疾病,但72.87%的人也担心无法提供遗传咨询。约55.34%的人建议nGS和串联质谱(TMS)筛选可以联合筛选模式应用。机构和个人教育水平越高,医疗保健专业人员对NGS的兴趣越高。然而,他们还对无法提供遗传咨询和伦理问题表现出更大的担忧。如果一个中心从事TMS筛查,它的工作人员更有可能相信nGS有很大的优势。此外,大多数参与者都有道德问题,例如“携带有关成人发病风险的信息所造成的心理负担。\"
    UNASSIGNED:大多数参与者都感兴趣并认为有必要进行nGS。无法提供遗传咨询可能是临床实践的主要障碍。三个重要的影响因素是受教育程度,机构层面,并参与TMS筛查。
    UNASSIGNED: To understand the knowledge, attitude, willingness, and ability of healthcare professionals working in newborn screening (NBS) centers regarding newborn genetic screening (nGS).
    UNASSIGNED: The questionnaire consisted of four sections with 27 questions and the data were collected by the WJX platform. All participants accessed the questionnaire by scanning a specific QR code with their mobile phones. Two researchers independently completed the summary and analysis.
    UNASSIGNED: A total of 258 valid questionnaires were collected from 43 NBS centers in six provinces of southeast China. In total, 209 (81.01%) participants were interested in nGS, and almost all participants (97.67%) thought that nGS was necessary in China. About 89.53% of participants thought that it could be used to effectively expand the diseases that could be screened, but 72.87% also worried about the inability to provide genetic counseling. About 55.34% suggested that nGS and tandem mass spectrometry (TMS) screening could be applied in a unite screening mode. The higher the institution and personal education levels, the higher the interest healthcare professionals displayed toward nGS. However, they also showed greater concern about the inability to provide genetic counseling and ethical issues. If a center had engaged in TMS screening, its staff would have been more likely to believe that nGS had great advantages. In addition, most participants had ethical concerns, such as \"the psychological burden caused by carrying information regarding adult morbidity risk.\"
    UNASSIGNED: Most participants were interested and considered nGS necessary. The inability to provide genetic counseling may be the primary impediment to clinical practice. Three important influencing factors were level of education, institution level, and engagement in TMS screening.
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  • 文章类型: Journal Article
    新生儿筛查(NBS)已使用各种技术平台对新生儿先天性疾病实施,但是假阳性和假阴性结果仍然很常见。此外,NBS的靶疾病受到合适的生物标志物的限制。在这里,我们试图评估使用下一代测序技术进一步改进筛查的可行性。
    我们设计了一个基于多重PCR和下一代测序的新生儿基因测序(NBGS)小组,以分析74种先天性疾病的134个基因。在287个具有先前已知突变的样本中进行了验证。对4986例新生儿的回顾性队列进行了分析,并与生化结果进行了比较,以评估该小组的表现。
    所有样品的面板精度为99.65%,从287个样本中检测到154个突变100%。在4986名新生儿中,共有113例新生儿检测到双等位基因或半合子突变,其中36例新生儿在NBGS和常规NBS(C-NBS)中均为同一疾病阳性,77例NBGS阳性/C-NBS阴性。重要的是,77名新生儿中有4名被诊断为目前包括1名患有甲基丙二酸血症的新生儿,1例新生儿原发性全身肉碱缺乏症和2例新生儿威尔逊病。共发现1326名新生儿为携带者,总携带者率为26.6%。
    基于下一代测序的分析可以有效地识别患有更多先天性疾病的新生儿。结合C-NBS,这种方法可以提高新生儿先天性疾病的早期和准确识别。我们的研究为前瞻性研究和在NBS中实施基于NGS的分析奠定了基础。
    Newborn screening (NBS) has been implemented for neonatal inborn disorders using various technology platforms, but false-positive and false-negative results are still common. In addition, target diseases of NBS are limited by suitable biomarkers. Here we sought to assess the feasibility of further improving the screening using next-generation sequencing technology.
    We designed a newborn genetic sequencing (NBGS) panel based on multiplex PCR and next generation sequencing to analyze 134 genes of 74 inborn disorders, that were validated in 287 samples with previously known mutations. A retrospective cohort of 4986 newborns was analyzed and compared with the biochemical results to evaluate the performance of this panel.
    The accuracy of the panel was 99.65% with all samples, and 154 mutations from 287 samples were 100% detected. In 4986 newborns, a total of 113 newborns were detected with biallelic or hemizygous mutations, of which 36 newborns were positive for the same disorder by both NBGS and conventional NBS (C-NBS) and 77 individuals were NBGS positive/C-NBS negative. Importantly, 4 of the 77 newborns were diagnosed currently including 1 newborn with methylmalonic acidemia, 1 newborn with primary systemic carnitine deficiency and 2 newborns with Wilson\'s disease. A total of 1326 newborns were found to be carriers with an overall carrier rate of 26.6%.
    Analysis based on next generation sequencing could effectively identify neonates affected with more congenital disorders. Combined with C-NBS, this approach may improve the early and accurate identification of neonates with inborn disorders. Our study lays the foundation for prospective studies and for implementing NGS-based analysis in NBS.
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  • 文章类型: Journal Article
    新生儿的同步听力和基因筛查不仅有望在先天性耳聋的早期发现和诊断中发挥重要作用。这引发了干预,还可以预测迟发性和进行性听力损失,并确定有药物诱发HL风险的个体。2012年1月,北京市开展了新生儿全人群同步听力和基因筛查。这项研究包括2013年4月至2014年3月在北京出生的180,469名婴儿,最后一次随访于2018年2月24日。使用瞬时诱发耳声发射(TEOAE)和自动听觉脑干反应(AABR)进行听力筛查。基因检测,收集干燥的血斑和四个基因的九个变异,GJB2,SLC26A4,mtDNA12SrRNA,使用DNA微阵列平台筛选GJB3。在180,469名婴儿中,1,915(1.061%)被双边或单方面转诊为听力筛查;8,136(4.508%)为遗传筛查阳性(杂合子,纯合子,或复合杂合子和mtDNA纯质或杂质),其中7,896人(4.375%)通过了听力筛查。40名(0.022%)婴儿在GJB2或SLC26A4(纯合子或复合杂合子)中携带两种变体,其中10名婴儿通过了新生儿听力筛查。总的来说,409例(0.227%)婴儿携带mtDNA12SrRNA变体(m.155A>G或m.1494C>T),其中405人通过了新生儿听力筛查。在这项队列研究中,25%的GJB2或SLC26A4变异致病组合婴儿和99%的m.155A>G或m.1494C>T变异婴儿通过了常规新生儿听力筛查,这表明并行筛查为先天性耳聋的治疗和耳毒性的预防提供了更全面的方法。
    Concurrent hearing and genetic screening of newborns is expected to play important roles not only in early detection and diagnosis of congenital deafness, which triggers intervention, but also in predicting late-onset and progressive hearing loss and identifying individuals who are at risk of drug-induced HL. Concurrent hearing and genetic screening in the whole newborn population in Beijing was launched in January 2012. This study included 180,469 infants born in Beijing between April 2013 and March 2014, with last follow-up on February 24, 2018. Hearing screening was performed using transiently evoked otoacoustic emission (TEOAE) and automated auditory brainstem response (AABR). For genetic testing, dried blood spots were collected and nine variants in four genes, GJB2, SLC26A4, mtDNA 12S rRNA, and GJB3, were screened using a DNA microarray platform. Of the 180,469 infants, 1,915 (1.061%) were referred bilaterally or unilaterally for hearing screening; 8,136 (4.508%) were positive for genetic screening (heterozygote, homozygote, or compound heterozygote and mtDNA homoplasmy or heteroplasmy), among whom 7,896 (4.375%) passed hearing screening. Forty (0.022%) infants carried two variants in GJB2 or SLC26A4 (homozygote or compound heterozygote) and 10 of those infants passed newborn hearing screening. In total, 409 (0.227%) infants carried the mtDNA 12S rRNA variant (m.1555A>G or m.1494C>T), and 405 of them passed newborn hearing screening. In this cohort study, 25% of infants with pathogenic combinations of GJB2 or SLC26A4 variants and 99% of infants with an m.1555A>G or m.1494C>T variant passed routine newborn hearing screening, indicating that concurrent screening provides a more comprehensive approach for management of congenital deafness and prevention of ototoxicity.
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  • 文章类型: Journal Article
    脊髓性肌萎缩症(SMA)是一种遗传性神经肌肉疾病,是全球婴儿死亡的主要遗传原因。然而,英国没有SMA的常规筛查计划。缺乏治疗和无法准确预测疾病严重程度的筛查测试是英国筛查实施步履蹒跚的关键原因之一。随着SMA(Nusinersen)的第一种疗法的发布,有人呼吁重新考虑这一立场;然而,公众的观点知之甚少。
    对232名与SMA没有关系的人进行了一项在线调查,以评估他们对新生儿筛查计划的态度。将结果与先前收集的有关受SMA影响的家庭对筛查的看法的数据进行比较。
    84%的参与者赞成新生儿筛查。支持的主要原因是相信这将为受影响的婴儿带来更好的医疗保健和预期寿命,并促进未来怀孕的知情决策。不支持的主要原因是,人们相信在联系和压力方面可能会对家庭单位产生重大负面影响。
    公众可接受性是评估英国任何潜在筛查计划的关键组成部分。这项研究表明,新生儿对SMA的筛查在很大程度上被不熟悉这种情况的人所接受。早期识别的重要性超过了对大多数参与者进行筛查的所有其他社会和道德问题。
    Spinal muscular atrophy (SMA) is an inherited neuromuscular disorder and a leading genetic cause of infant death worldwide. However, there is no routine screening program for SMA in the UK. Lack of treatments and the inability of screening tests to accurately predict disease severity are among the key reasons implementation of screening has faltered in the UK. With the recent release of the first therapy for SMA (Nusinersen), calls are being made for a reconsideration of this stance; however, very little is known about the views of the general public.
    An online survey was administered to 232 individuals with no prior relationship with SMA to assess their attitudes toward a newborn screening program for it. Results are compared with previously gathered data on the views of SMA-affected families toward screening.
    Eighty-four percent of participants were in favor of newborn screening. Key reasons for support were a belief that it would lead to better healthcare and life expectancy for affected infants and facilitate informed decision-making for future pregnancies. Key reasons for nonsupport were a belief in the potential for significant negative impact on the family unit in terms of bonding and stress.
    Public acceptability is a key component in the evaluation of any potential screening program in the UK. This study demonstrates that newborn screening for SMA is viewed largely positively by people unfamiliar with the condition. The importance of early identification overrode all other social and ethical concerns about screening for the majority of participants.
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  • 文章类型: Journal Article
    Spinal muscular atrophy (SMA) is one of the leading genetic causes of infant death worldwide. However, due to a lack of treatments, SMA has historically fallen short of Wilson-Jungner criteria. While studies have explored the acceptability of expanded newborn screening to the general public, the views of affected families have been largely overlooked. This is in spite of the potential for direct impacts on them and their unique positioning to consider the value of early diagnosis. We have previously reported data on attitudes toward pre-conception and prenatal genetic screening for SMA among affected families (adults with SMA [n = 82] and family members [n = 255]). Here, using qualitative interview [n = 36] and survey data [n = 337], we report the views of this same cohort toward newborn screening. The majority (70%) of participants were in favor, however, all subgroups (except adults with type II) preferred pre-conception and/or prenatal screening to newborn screening. Key reasons for newborn screening support were: (1) the potential for improved support; (2) the possibility of enrolling pre-symptomatic children on clinical trials. Key reasons for non-support were: (1) concerns about impact on the early experiences of the family; (2) inability to treat. Importantly, participants did not view the potential for inaccurate typing as a significant obstacle to the launch of a population-wide screening program. This study underscores the need to include families affected by genetic diseases within consultations on screening. This is particularly important for conditions such as SMA which challenge traditional screening criteria, and for which new therapeutics are emerging.
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  • 文章类型: Journal Article
    OBJECTIVE: Previous epidemiological studies indicate that GJB2, SLC26A4 or mtDNA 12S rRNA mutations were chiefly responsible for the hearing loss in children. A cost-effective method for screening deafness-associated mutations at early age is needed. This study aimed to develop a simple kit for screening of high risk deafness-associated mutations in newborns using tetra-primer amplification refractory mutation system PCR.
    METHODS: The screening kit was designed to detect high risk deafness-associated mutations (GJB2 c.235delC, SLC26A4 c.919-2A>G, mtDNA 12S rRNA mt.1555A>G and mt.1494C>T). The kit was able to amplify both wild-type and mutant alleles with a control fragment. The proposed method was conducted to genotype the above four deafness gene mutations in four PCR reactions. Each mutation was genotyped by a set of four primers, two allele-specific inner primers, and two common outer primers. A mismatch at the penultimate or antepenult nucleotide of the 3\' terminus was introduced in order to maximize specificity. The 16 primers were used for the amplification of genomic DNA as a template. Amplified fragments were separated by electrophoresis. We designed and validated the kit with wild and mutant type DNA samples that had been previously been confirmed by Sanger sequencing. Then 1181 newborns were enrolled, and those samples with mutations were further validated with sequencing too.
    RESULTS: Among 1181 newborns, 29 individuals had one or two mutant alleles, with the carrier rate being 2.46% (29/1181). For GJB2 c.235delC mutation, one case was homozygote and 12 cases were heterozygote carriers. For SLC26A4 c.919-2A>G mutation, 12 cases were heterozygotes carriers, and no homozygotes were found; for mtDNA 12S rRNA mt.1555A>G mutation, one case was identified; three cases of mtDNA 12S rRNA mt.1494C>T mutation were detected. All mutations were detected with high specificity. Mutation samples were confirmed via Sanger sequencing. No false positive was found.
    CONCLUSIONS: A user-friendly screening kit for deafness-associated mutations was successfully developed. It provided rapid, reproducible, and cost-effective detection of deafness gene mutation without special equipment. The kit allowed the detection of the four high risk deafness-associated mutations with only 4 single tube PCR reactions. In the future, the kit could be applied to large population-based epidemiological studies for newborn hearing defects screening.
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