NFI Transcription Factors

NFI 转录因子
  • 文章类型: Journal Article
    背景:骨肉瘤(OS)是一种恶性骨肿瘤,常见于20岁以下的儿童和青少年。microRNAs(miRNAs)的失调是OS发生和发展的重要因素。微小RNAmiR-744-5p在各种肿瘤中异常表达。然而,其在OS中的作用和分子靶标尚不清楚。
    方法:使用基因表达Omnibus数据集GSE65071分析OS中差异表达的miRNA,并通过加权基因共表达网络分析鉴定潜在的hubmiRNA。实时定量PCR(qRT-PCR)检测miR-744-5p在OS细胞系中的表达。体外实验,包括CCK-8检测,集落形成试验,流式细胞术细胞凋亡测定,和试管形成测定,探讨miR-744-5p对OS细胞生物学行为的影响。通过生物信息学方法预测miR-744-5p的下游靶基因,结合位点通过双荧光素酶报告基因测定进行验证。
    结果:低表达的miRNA,miR-744-5p,通过生物信息学分析确定为参与OS进展的hubmiRNA。核因子IX(NFIX)在OS中被证实为miR-744-5p的直接靶标。体外研究显示过表达miR-744-5p可以抑制OS细胞的生长,而miR-744-5p抑制显示出相反的效果。还观察到,用来自miR-744-5p过表达的OS细胞的条件培养基处理导致人脐静脉内皮细胞(HUVEC)中较差的增殖和血管生成。此外,NFIX过表达恢复了miR-744-5p过表达对OS细胞生长和HUVECs血管生成的抑制作用。
    结论:我们的结果表明,miR-744-5p通过靶向NFIX来抑制OS细胞的生长和HUVEC中的血管生成,是OS进展中潜在的抑瘤miRNA。
    BACKGROUND: Osteosarcoma (OS) is a malignant bone tumor that commonly occurs in children and adolescents under the age of 20. Dysregulation of microRNAs (miRNAs) is an important factor in the occurrence and progression of OS. MicroRNA miR-744-5p is aberrantly expressed in various tumors. However, its roles and molecular targets in OS remain unclear.
    METHODS: Differentially expressed miRNAs in OS were analyzed using the Gene Expression Omnibus dataset GSE65071, and the potential hub miRNA was identified through weighted gene co-expression network analysis. Quantitative real-time PCR (qRT-PCR) was used to detect the expression of miR-744-5p in OS cell lines. In vitro experiments, including CCK-8 assays, colony formation assays, flow cytometry apoptosis assays, and tube formation assays, were performed to explore the effects of miR-744-5p on OS cell biological behaviors. The downstream target genes of miR-744-5p were predicted through bioinformatics, and the binding sites were validated by a dual-luciferase reporter assay.
    RESULTS: The lowly expressed miRNA, miR-744-5p, was identified as a hub miRNA involved in OS progression through bioinformatic analysis. Nuclear factor I X (NFIX) was confirmed as a direct target for miR-744-5p in OS. In vitro studies revealed that overexpression of miR-744-5p could restrain the growth of OS cells, whereas miR-744-5p inhibition showed the opposite effect. It was also observed that treatment with the conditioned medium from miR-744-5p-overexpressed OS cells led to poorer proliferation and angiogenesis in human umbilical vein endothelial cells (HUVECs). Furthermore, NFIX overexpression restored the suppression effects of miR-744-5p overexpression on OS cell growth and HUVECs angiogenesis.
    CONCLUSIONS: Our results indicated that miR-744-5p is a potential tumor-suppressive miRNA in OS progression by targeting NFIX to restrain the growth of OS cells and angiogenesis in HUVECs.
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  • 文章类型: Journal Article
    背景:circRNANFIX已被证明作为一种癌基因存在于神经胶质瘤中。但其在非小细胞肺癌(NSCLC)中的表达及作用尚不清楚。本研究旨在发现circRNANFIX在非小细胞肺癌中的表达和功能。
    方法:在这项研究中,qRT-PCR用于研究circRNANFIX的表达水平,miRNA-214-3p,和TRIAP1在NSCLC组织和细胞系中的表达。使用Starbase预测circRNANFIX/TRIAP1和miRNA-214-3p之间的结合位点。使用双荧光素酶报告基因测定进一步验证这些相互作用。通过MTT和流式细胞术评估细胞增殖和凋亡,分别。通过蛋白质印迹法检测凋亡相关蛋白的表达。
    结果:miRNA-214-3p可以与circRNANFIX连接。circRNANFIX上调,而miRNA-214-3p在NSCLC细胞系和临床样品中下调。此外,抑制circRNANFIX抑制细胞增殖并通过上调miRNA-214-3p表达诱导NSCLC细胞凋亡。此外,数据表明TRIAP1是miRNA-214-3p的靶标,在NSCLC细胞中受到miRNA-214-3p的负调控。miRNA-214-3p的过度表达抑制NSCLC细胞增殖并增加凋亡。此外,TRIAP1的过表达显著逆转了miRNA-214-3p模拟物对NSCLC细胞的影响。
    结论:circRNANFIX沉默通过调控miR-214-3p/TRIAP1轴抑制NSCLC细胞增殖并诱导细胞凋亡,是NSCLC的潜在诊断和治疗靶点。
    BACKGROUND: circRNA NFIX has been shown to exist as an oncogene in glioma. But its expression and role in NSCLC (non-small cell lung cancer) are still unclear. This research aimed to discover the expression and function of circRNA NFIX in NSCLC.
    METHODS: In this research, qRT-PCR was utilized to investigate the expression levels of circRNA NFIX, miRNA-214-3p, and TRIAP1 in NSCLC tissues and cell lines. The binding sites between circRNA NFIX/TRIAP1 and miRNA-214-3p were predicted using the Starbase. These interactions were further validated using a double luciferase reporter assay. Cell proliferation and apoptosis were assessed through MTT and flow cytometry, respectively. The expression of apoptosis-related proteins was measured by western blot assay.
    RESULTS: miRNA-214-3p could link with circRNA NFIX. circRNA NFIX was upregulated, while miRNA-214-3p was downregulated in NSCLC cell lines and clinical samples. Besides, suppression of circRNA NFIX repressed cell proliferation and induced apoptosis in NSCLC cells by upregulating miRNA-214-3p expression. Besides, the data indicated that TRIAP1 was a target of miRNA-214-3p, and it was negatively regulated by miRNA-214-3p in NSCLC cells. The excessive expression of miRNA-214-3p suppressed NSCLC cell proliferation and increased apoptosis. In addition, overexpression of TRIAP1 significantly reversed the effects on NSCLC cells caused by miRNA-214-3p mimic.
    CONCLUSIONS: circRNA NFIX silencing repressed the proliferation of NSCLC cells and induced cell apoptosis by regulating the miR-214-3p/TRIAP1 axis, which was a potential diagnostic and therapeutic target for NSCLC.
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  • 文章类型: Journal Article
    腺样囊性癌(AdCC)是一种涎腺肿瘤,很少出现在鼻窦区域。本研究的目的是评估鼻窦AdCC的预后和临床病理参数。回顾性分析了2000年至2018年在苏黎世大学医院发生的影响鼻腔或鼻旁窦的所有AdCC病例。检查肿瘤材料的形态特征并分析分子改变。共纳入14例患者。演示时的平均年龄为57.7岁。测序显示11/12可分析病例中MYB::NFIB基因融合。不良预后因素是实质性变异(p<0.001),组织病理学高级别转化(p<0.001),肿瘤受累于蝶窦(p=0.02)。中位无复发生存期(RFS)和OS分别为5.2年和11.3年。RFS费率为1-,5-,十年是100%,53.8%,和23.1%。操作系统速率为1-,5-,10年是100%,91.7%,和62.9%,分别。在结论中,固体变体(固体部分>30%),高等级改造,蝶窦受累是鼻窦AdCC的不良预后因素。MYB::NFIB基因融合的高患病率可能有助于正确分类诊断挑战性(例如非典型)病例。
    Adenoid cystic carcinoma (AdCC) is a salivary gland neoplasm that infrequently appears in the sinonasal region. The aim of this study was to evaluate the outcome and clinicopathological parameters of sinonasal AdCC. A retrospective analysis was conducted on all cases of AdCC affecting the nasal cavity or paranasal sinuses between 2000 and 2018 at the University Hospital Zurich. Tumor material was examined for morphological features and analyzed for molecular alterations. A total of 14 patients were included. Mean age at presentation was 57.7 years. Sequencing revealed MYB::NFIB gene fusion in 11/12 analyzable cases. Poor prognostic factors were solid variant (p < 0.001), histopathological high-grade transformation (p < 0.001), and tumor involvement of the sphenoid sinus (p = 0.02). The median recurrence-free survival (RFS) and OS were 5.2 years and 11.3 years. The RFS rates at 1-, 5-, and 10-year were 100%, 53.8%, and 23.1%. The OS rates at 1-, 5-, and 10- years were 100%, 91.7%, and 62.9%, respectively. In Conclusion, the solid variant (solid portion > 30%), high-grade transformation, and sphenoid sinus involvement are negative prognostic factors for sinonasal AdCC. A high prevalence of MYB::NFIB gene fusion may help to correctly classify diagnostically challenging (e.g. metatypical) cases.
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  • 文章类型: Journal Article
    慢性缺氧对高海拔地区母婴健康的不利影响值得关注。然而,仍然缺乏有效的保护措施,以防止由此导致的婴儿和幼儿的生长限制和神经发育障碍。这项研究通过将怀孕的小鼠暴露于模拟海拔4000m的低压缺氧室直到分娩后28天来研究缺氧条件下小鼠后代的神经发育。我们的发现表明,长时间暴露于缺氧可能会导致后代的情绪异常和社交障碍。星形胶质细胞生成的显着减少是与缺氧引起的神经发育障碍相关的特征。进一步的研究表明,冷诱导RNA结合蛋白(CIRBP)是星形胶质细胞发生的关键转录调节因子,通过与NFIA的串扰下调缺氧下的星形细胞分化。我们的研究强调了CIRBP在调节星形胶质细胞生成中的关键作用,并强调了其作为与缺氧相关的神经发育障碍治疗干预的有希望的靶标的潜力。
    The adverse impacts of chronic hypoxia on maternal and infant health at high altitudes warrant significant attention. However, effective protective measures against the resultant growth restrictions and neurodevelopmental disorders in infants and young children are still lacking. This study investigated the neurodevelopment of mice offspring under hypoxic conditions by exposing pregnant mice to a hypobaric oxygen chamber that simulated the hypobaric hypoxia at an altitude of 4000 m until 28 days after delivery. Our findings suggested that prolonged exposure to hypoxia might result in emotional abnormalities and social disorders in offspring. The significant reduction in astrogliogenesis was a characteristic feature associated with neurodevelopmental disorders induced by hypoxia. Further studies demonstrated that cold-induced RNA-binding protein (CIRBP) was a key transcriptional regulator in astrogliogenesis, which downregulated astrocytic differentiation under hypoxia through its crosstalk with the NFIA. Our study emphasized the crucial role of CIRBP in regulating astrogliogenesis and highlighted its potential as a promising target for therapeutic interventions in neurodevelopmental disorders associated with hypoxia.
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  • 文章类型: Journal Article
    This article reports on the clinical and genetic characteristics of monozygotic twins with Marshall-Smith syndrome (MRSHSS) due to a mutation in the NFIX gene, along with a review of related literature. Both patients presented with global developmental delays, a prominent forehead, shallow eye sockets, and pectus excavatum. Genetic testing revealed a heterozygous splicing site mutation c.697+1G>A in both children, with parents showing wild-type at this locus. According to the guidelines of the American College of Medical Genetics and Genomics, this mutation is considered likely pathogenic and has not been previously reported in the literature. A review of the literature identified 32 MRSHSS patients with splicing/frameshift mutations. Accelerated bone maturation and moderate to severe global developmental delay/intellectual disability are the primary clinical manifestations of patients with MRSHSS. Genetic testing results are crucial for the diagnosis of this condition.
    该文报道了一对NFIX基因变异导致Marshall-Smith综合征(Marshall-Smith syndrome, MRSHSS)的同卵双胞胎临床及遗传学特点并对相关文献进行复习。2例患儿均表现为全面发育落后、高额头、浅眼眶、漏斗胸。基因检测提示2例患儿均存在NFIX杂合剪接位点变异c.697+1G>A,父母该位点为野生型,根据美国医学遗传学与基因组学学会指南判定为可能致病性变异,该位点突变既往未见文献报道。复习文献共发现32例MRSHSS患者,突变类型为剪切/移码突变。骨骼成熟加速、中至重度全面发育迟缓/智力障碍是MRSHSS患者最主要的临床表现。基因检测结果是该病重要的诊断依据。.
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  • 文章类型: Journal Article
    通过直接重编程产生神经元已成为治疗神经退行性疾病的有希望的治疗方法。在这项研究中,我们提出了一种将视网膜胶质细胞重编程为神经元的有效方法。通过破坏Rbpj或Notch1/2来抑制Notch信号传导,我们诱导成熟的Müller神经胶质细胞重编程为双极和无长弹样神经元。我们证明Rbpj直接激活Notch效应子基因和成熟Müller胶质细胞特异性基因,同时间接抑制神经源性碱性螺旋-环-螺旋(bHLH)因子的表达。Rbpj和Nfia/b/x功能的共同丧失导致几乎所有Müller神经胶质细胞转化为神经元。最后,通过过度表达显性活性Yap来诱导Müller胶质细胞增殖,可促进Rbpj-和Nfia/b/x/Rbpj缺陷的Müller胶质细胞的神经发生。这些发现表明,Notch信号和NFI因子同时抑制哺乳动物Müller胶质细胞的神经发生能力,并有助于阐明旨在治疗视网膜营养不良的再生疗法的潜在策略。
    Generation of neurons through direct reprogramming has emerged as a promising therapeutic approach for treating neurodegenerative diseases. In this study, we present an efficient method for reprogramming retinal glial cells into neurons. By suppressing Notch signaling by disrupting either Rbpj or Notch1/2, we induced mature Müller glial cells to reprogram into bipolar- and amacrine-like neurons. We demonstrate that Rbpj directly activates both Notch effector genes and genes specific to mature Müller glia while indirectly repressing expression of neurogenic basic helix-loop-helix (bHLH) factors. Combined loss of function of Rbpj and Nfia/b/x resulted in conversion of nearly all Müller glia to neurons. Last, inducing Müller glial proliferation by overexpression of dominant-active Yap promotes neurogenesis in both Rbpj- and Nfia/b/x/Rbpj-deficient Müller glia. These findings demonstrate that Notch signaling and NFI factors act in parallel to inhibit neurogenic competence in mammalian Müller glia and help clarify potential strategies for regenerative therapies aimed at treating retinal dystrophies.
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  • 文章类型: Case Reports
    红系肉瘤(ES)在儿科人群中极为罕见,仅有少数从头病例报告,主要发生在中枢神经系统(CNS)或眼眶。它在临床和病理上具有挑战性,并且可以伪装成非造血小圆蓝细胞肿瘤。没有骨髓参与的ES的临床表现使诊断特别困难。我们描述了一名22个月大的ES女性,其表现为涉及左腮腺区域和中枢神经系统的2厘米肿块。尽管进行了广泛的免疫组织化学检查,但初始活检中存在的挤压/固定伪影使这种高度增生和恶性肿瘤的明确分类具有挑战性。包括RNA测序在内的分子研究揭示了NFIA::CBFA2T3融合。已在几例从头急性红系白血病(AEL)中鉴定出这种融合,并且将该病例与其他AEL进行比较的基因表达分析显示出相似的转录谱。鉴于这种肿瘤的诊断挑战性,临床RNA测序对于确定诊断至关重要.
    Erythroid sarcoma (ES) is exceedingly rare in the pediatric population with only a handful of reports of de novo cases, mostly occurring in the central nervous system (CNS) or orbit. It is clinically and pathologically challenging and can masquerade as a nonhematopoietic small round blue cell tumor. Clinical presentation of ES without bone marrow involvement makes diagnosis particularly difficult. We describe a 22-month-old female with ES who presented with a 2-cm mass involving the left parotid region and CNS. The presence of crush/fixation artifact from the initial biopsy made definitive classification of this highly proliferative and malignant neoplasm challenging despite an extensive immunohistochemical workup. Molecular studies including RNA-sequencing revealed a NFIA::CBFA2T3 fusion. This fusion has been identified in several cases of de novo acute erythroid leukemia (AEL) and gene expression analysis comparing this case to other AELs revealed a similar transcriptional profile. Given the diagnostically challenging nature of this tumor, clinical RNA-sequencing was essential for establishing a diagnosis.
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  • 文章类型: Journal Article
    胶质母细胞瘤是一种罕见且致命的恶性肿瘤,存活率低。新出现的证据表明,异常表达的环状RNA(circRNAs)在GBM肿瘤发生的启动和进展中起关键作用。circZNF609和circNFIX的致癌功能与几种类型的癌症有关,但这些circRNAs在胶质母细胞瘤中的作用和潜在机制尚不清楚。在这项研究中,我们假设circZNF609和circNFIX可能通过海绵作用miR-145-5p来调节EGFR.在这里,我们评估了circZNF609,circNFIX,miR-145-5p,在胶质母细胞瘤患者和正常脑样本中使用定量聚合酶链反应和EGFR。结果表明,circZNF609,circNFIX,和EGFR表达水平上调,miR145-5p下调(p分别为0.001、0.06、0.002和0.0065),而患者的临床病理特征与这些基因的表达水平之间没有显着关联。我们还发现miR145-5p与cZNF609,cNFIX和EGFR的表达之间存在显着的负相关(分别为p=0.0003,0.0006和0.009)。这些发现可能为研究人员更好地了解GBM发病机制的潜在途径打开了一个新的窗口。总之,这可能为开发治疗GBM患者的有效药物提供新的潜在途径。
    Glioblastoma is a rare and deadly malignancy with a low survival rate. Emerging evidence has shown that aberrantly expressed circular RNAs (circRNAs) play a critical role in the initiation and progression of GBM tumorigenesis. The oncogenic function of circZNF609 and circNFIX is involved in several types of cancer, but the role and underlying mechanism of these circRNAs in glioblastoma remain unclear. In this study, we hypothesized that circZNF609 and circNFIX may regulate EGFR through sponging miR-145-5p. Herein, we assessed the expression levels of circZNF609, circNFIX, miR-145-5p, and EGFR using quantitative polymerase chain reaction in glioblastoma patients and normal brain samples. The results showed that circZNF609, circNFIX, and EGFR expression levels were upregulated and miR145-5p was downregulated (p = 0.001, 0.06, 0.002, and 0.0065, respectively), while there was no significant association between clinicopathological features of the patients and the level of these genes expression. We also found a significant inverse correlation between miR145-5p and the expression of cZNF609, cNFIX and EGFR (p = 0.0003, 0.0006, and 0.009, respectively). These findings may open a new window for researchers to better understand the potential pathways involved in GBM pathogenesis. In conclusion, it may provide a new potential pathway for the development of effective drugs for the treatment of GBM patients.
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  • 文章类型: Journal Article
    作为细胞转录因子和DNA复制因子,核因子I(NFI)家族成员在哺乳动物发育过程中起着重要作用。然而,关于牛NFI家族成员肌肉再生的研讨尚缺乏。在这项研究中,对NFI家族因子进行表征分析,系统发育学,和功能域。我们发现NFI家族成员在不同物种之间相对保守,但是氨基酸序列存在异质性,DNA编码序列,和成员之间的功能域。此外,在NFI家庭因素中,我们观察到NFIC在牛肌肉组织中表现出高度表达,特别影响成肌细胞增殖标记基因的表达。探讨NFIC对成肌细胞增殖的影响,我们敲除NFIC(si-NFIC),发现成肌细胞的增殖显着促进。在调节机制方面,我们发现si-NFIC可以抵消细胞周期抑制剂RO-3306的抑制作用.有趣的是,CENPF,作为NFIC的下游靶基因,能影响CDK1、CCNB1的表达,积极调控细胞周期通路和细胞增殖。此外,当CENPF被击倒时,p53的磷酸化和Bax的表达增加,但Bcl2的表达受到抑制。我们的发现主要强调了NFIC作用于CENPF/CDK1轴调节牛成肌细胞增殖的机制。
    As cellular transcription factors and DNA replicators, nuclear factor I (NFI) family members play an important role in mammalian development. However, there is still a lack of research on the muscle regeneration of NFI family members in cattle. In this study, the analysis of NFI family factors was conducted on their characterization, phylogenetics, and functional domains. We found that NFI family members were relatively conserved among different species, but there was heterogeneity in amino acid sequences, DNA coding sequences, and functional domain among members. Furthermore, among NFI family factors, we observed that NFIC exhibited highly expression in bovine muscle tissues, particularly influencing the expression of proliferation marker genes in myoblasts. To investigate the influence of NFIC on myoblast proliferation, we knocked down NFIC (si-NFIC) and found that the proliferation of myoblasts was significantly promoted. In terms of regulation mechanism, we identified that si-NFIC could counteract the inhibitory effect of the cell cycle inhibitor RO-3306. Interestingly, CENPF, as the downstream target gene of NFIC, could affect the expression of CDK1, CCNB1, and actively regulate the cell cycle pathway and cell proliferation. In addition, when CENPF was knocked down, the phosphorylation of p53 and the expression of Bax were increased, but the expression of Bcl2 was inhibited. Our findings mainly highlight the mechanism by which NFIC acts on the CENPF/CDK1 axis to regulate the proliferation of bovine myoblasts.
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  • 文章类型: Journal Article
    神经干细胞(NSC)是多能的,正确的命运决定对于保证大脑形成和稳态至关重要。如何指示NSC产生神经元或神经胶质后代还没有很好地理解。在这里,我们讨论了如何调节鼠成年海马NSC命运,并描述了支架附着因子B(SAFB)如何阻断少突胶质细胞的产生以实现神经元的产生。我们发现SAFB通过与NfibmRNA中的序列结合并增强转录物的Drosha依赖性裂解来阻止转录因子核因子I/B(NFIB)的NSC表达。我们表明,增加SAFB表达阻止多能成年神经干细胞产生少突胶质细胞,Safb的条件性缺失会增加成年海马中NFIB的表达和少突胶质细胞的形成。我们的结果为通过以谱系特异性方式调节NfibmRNA的转录后去稳定来控制Drosha功能以选择性调节NSC命运的机制提供了新的见解。
    Neural stem cells (NSCs) are multipotent and correct fate determination is crucial to guarantee brain formation and homeostasis. How NSCs are instructed to generate neuronal or glial progeny is not well understood. Here, we addressed how murine adult hippocampal NSC fate is regulated and described how scaffold attachment factor B (SAFB) blocks oligodendrocyte production to enable neuron generation. We found that SAFB prevents NSC expression of the transcription factor nuclear factor I/B (NFIB) by binding to sequences in the Nfib mRNA and enhancing Drosha-dependent cleavage of the transcripts. We show that increasing SAFB expression prevents oligodendrocyte production by multipotent adult NSCs, and conditional deletion of Safb increases NFIB expression and oligodendrocyte formation in the adult hippocampus. Our results provide novel insights into a mechanism that controls Drosha functions for selective regulation of NSC fate by modulating the post-transcriptional destabilization of Nfib mRNA in a lineage-specific manner.
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