NCAM1

NCAM1
  • 文章类型: Journal Article
    背景:本研究旨在通过评估基因表达和细胞因子及趋化因子分泌的改变,探讨极低频电磁场(ELF-EMF)对肾透明细胞癌(ccRCC)的影响。
    方法:三种ccRCC细胞系(786-O,769-P,和CAKI-1)和健康的HEK293细胞系进行ELF-EMF暴露(频率50Hz,磁场强度4.5mT),每天30分钟,持续5天。该研究检测了ADAM28,NCAM1和VEGFC基因的表达,伴随着30种细胞因子和趋化因子的分泌。
    结果:值得注意的是,原发性肿瘤来源的细胞系,但不是那些来自转移部位的,表现出ADAM28基因表达,在ELF-EMF暴露后增加。在ELF-EMF暴露后,在769-P细胞中观察到VEGFC基因表达的统计学显着降低。此外,NCAM1基因表达在HEK293,769-P,和786-O细胞,代表正常胚胎肾细胞和原代肿瘤细胞,但不是在CAKI-1细胞中,为转移部位建模。EMF暴露后,HEK293和CAKI-1细胞系的细胞培养上清液中转化生长因子β1(TGF-β1)浓度有统计学上的显着降低,在测试的细胞因子的分泌中没有其他显著变化。
    结论:根据研究结果和现有研究,在得出关于ELF-EMF对ccRCC进展的潜在抑制作用的结论时,需要谨慎。在评估人类环境中EMF的影响时,必须对实验模型进行标准化。
    BACKGROUND: The study aimed to investigate the influence of extremely low-frequency electromagnetic fields (ELF-EMF) on clear cell renal cell carcinoma (ccRCC) by assessing alterations in gene expression and the secretion of cytokines and chemokines.
    METHODS: Three ccRCC cell lines (786-O, 769-P, and CAKI-1) and a healthy HEK293 cell line were subjected to ELF-EMF exposure (frequency 50 Hz, magnetic field strength 4.5 mT) for 30 min daily for 5 days. The study examined the expression of ADAM28, NCAM1, and VEGFC genes, along with the secretion of 30 cytokines and chemokines.
    RESULTS: Notably, primary tumor-derived cell lines, but not those from metastatic sites, exhibited ADAM28 gene expression, which increased following ELF-EMF exposure. A statistically significant reduction in VEGFC gene expression was observed in 769-P cells after ELF-EMF exposure. Additionally, NCAM1 gene expression was upregulated in HEK293, 769-P, and 786-O cells, representing normal embryonic kidney cells and primary tumor cells, but not in CAKI-1 cells, which model metastatic sites. After EMF exposure, there was a statistically significant decrease in transforming growth factor β1 (TGF-β1) concentration in the cell culture supernatants of HEK293 and CAKI-1 cell lines, with no other significant changes in the secretion of tested cytokines.
    CONCLUSIONS: Given the study\'s findings and available research, caution is warranted when drawing conclusions about the potential inhibitory effect of ELF-EMF on ccRCC progression. Standardization of experimental models is imperative when assessing the effects of EMF in a human context. Med Pr Work Health Saf. 2024;75(2):133-141.
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  • 文章类型: Journal Article
    背景:膀胱癌(BLCA)是一种常见且致命的泌尿系癌症,需要有效的治疗方法,特别是肌肉浸润性膀胱癌(MIBC)。细胞周期抑制剂有望恢复BLCA细胞中细胞周期的控制,但他们的临床预后评估是有限的。
    方法:转录组和scRNA-seq数据来自癌症基因组图谱计划(TCGA)-BLCA和GSE190888队列,分别。使用R软件和Seurat软件包进行数据分析,包括细胞质量控制,降维,和差异表达基因的鉴定。与细胞周期相关的基因从基因卡网站获得,使用cytoscape软件进行蛋白质-蛋白质相互作用网络分析。功能富集分析,免疫浸润分析,药物敏感性分析,和分子对接使用各种工具和包装进行。培养BLCA细胞系并转染用于体外实验测定,包括RT-qPCR分析,和CCK-8细胞活力测定。
    结果:我们确定了32个基因作为BLCA预测的独立风险或保护因子。功能富集分析显示它们参与细胞周期调控,凋亡,和各种信号通路。利用这些基因,我们开发了一个预测BLCA生存的列线图,在BLCA患者中显示出较高的预后分层疗效。确定了四个细胞周期相关的关键基因,包括NCAM1,HBB,CKD6和CTLA4。我们还确定了BLCA患者的主要细胞类型,并根据关键基因的表达水平研究了上皮细胞之间的功能差异。此外,我们观察到癌相关成纤维细胞浸润与风险评分值之间存在高度正相关关系.最后,我们进行了体外实验,以证明NCAM1在BLCA细胞增殖中的抑制作用。
    结论:这些研究结果表明,细胞周期相关基因可作为预测BLCA预后的潜在生物标志物,并可能成为开发更有效疗法的治疗靶点。希望,这些发现从细胞周期的角度为BLCA的分子机制和潜在治疗靶点提供了有价值的见解。此外,NCAM1是BLCA癌变中的一种新型细胞增殖抑制因子。
    BACKGROUND: Bladder cancer (BLCA) is a prevalent and deadly form of urinary cancer, and there is a need for effective therapies, particularly for muscle-invasive bladder cancer (MIBC). Cell cycle inhibitors show promise in restoring control of the cell cycle in BLCA cells, but their clinical prognosis evaluation is limited.
    METHODS: Transcriptome and scRNA-seq data were collected from the Cancer Genome Atlas Program (TCGA)-BLCA and GSE190888 cohort, respectively. R software and the Seurat package were used for data analysis, including cell quality control, dimensionality reduction, and identification of differentially expressed genes. Genes related to the cell cycle were obtained from the genecards website, and a protein-protein interaction network analysis was performed using cytoscape software. Functional enrichment analysis, immune infiltration analysis, drug sensitivity analysis, and molecular docking were conducted using various tools and packages. BLCA cell lines were cultured and transfected for in vitro experimental assays, including RT-qPCR analysis, and CCK-8 cell viability assays.
    RESULTS: We identified 32 genes as independent risk or protective factors for BLCA prediction. Functional enrichment analysis revealed their involvement in cell cycle regulation, apoptosis, and various signaling pathways. Using these genes, we developed a nomogram for predicting BLCA survival, which displayed high prognosis stratification efficacy in BLCA patients. Four cell cycle associated key genes identified, including NCAM1, HBB, CKD6, and CTLA4. We also identified the main cell types in BLCA patients and investigated the functional differences between epithelial cells based on their expression levels of key genes. Furthermore, we observed a high positive correlative relationship between the infiltration of cancer-associated fibroblasts and the risk score value. Finally, we conducted in vitro experiments to demonstrate the suppressive role of NCAM1 in BLCA cell proliferation.
    CONCLUSIONS: These findings suggest that cell cycle associated genes could serve as potential biomarkers for predicting BLCA prognosis and may represent therapeutic targets for the development of more effective therapies. Hopefully, these findings provide valuable insights into the molecular mechanisms and potential therapeutic targets in BLCA from the perspective of cell cycle. Moreover, NCAM1 was a novel cell proliferation suppressor in the BLCA carcinogenesis.
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  • 文章类型: Journal Article
    肾小球免疫复合物和补体介导的疾病的最新进展已经完善了儿科患者的诊断类别和对疾病发展的知情机制理解。在这里,我们讨论3类的选定进展。首先,膜性肾病抗原越来越多地用于表征儿科患者的疾病,包括磷脂酶A2受体(PLA2R),信号3B(Sema3B),神经表皮生长因子样1(NELL1),和原钙粘蛋白FAT1,以及狼疮膜相关抗原外生菌素1/2(EXT1/2),神经细胞粘附分子1(NCAM1),和转化生长因子β受体3(TGFBR3)。第二,我们研究了石蜡和轻链免疫荧光(IF)技术的进展,包括前者作为挽救技术的功能及其在青少年病例中诊断为具有掩盖的IgGκ沉积(MGMID)的膜样肾小球病和具有单型Ig沉积(PGNMID)的增生性肾小球肾炎的必要性,分别。最后,综述了补体在小儿肾小球疾病中作用的研究进展,特别注意重叠的临床,组织学,和C3肾小球病(C3G)中的遗传或功能替代补体途径(AP)异常,感染相关和感染后GN,“非典型”感染后GN,免疫复合物介导的膜增殖性肾小球肾炎(IC-MPGN),非典型溶血性尿毒综合征(aHUS)。
    Recent progress in glomerular immune complex and complement-mediated diseases have refined diagnostic categories and informed mechanistic understanding of disease development in pediatric patients. Herein, we discuss selected advances in 3 categories. First, membranous nephropathy antigens are increasingly utilized to characterize disease in pediatric patients and include phospholipase A2 receptor (PLA2R), Semaphorin 3B (Sema3B), neural epidermal growth factor-like 1 (NELL1), and protocadherin FAT1, as well as the lupus membranous-associated antigens exostosin 1/2 (EXT1/2), neural cell adhesion molecule 1 (NCAM1), and transforming growth factor beta receptor 3 (TGFBR3). Second, we examine advances in techniques for paraffin and light chain immunofluorescence (IF), including the former\'s function as a salvage technique and their necessity for diagnosis in adolescent cases of membranous-like glomerulopathy with masked IgG kappa deposits (MGMID) and proliferative glomerulonephritis with monotypic Ig deposits (PGNMID), respectively. Finally, progress in understanding the roles of complement in pediatric glomerular disease is reviewed, with specific attention to overlapping clinical, histologic, and genetic or functional alternative complement pathway (AP) abnormalities among C3 glomerulopathy (C3G), infection-related and post-infectious GN, \"atypical\" post-infectious GN, immune complex mediated membranoproliferative glomerulonephritis (IC-MPGN), and atypical hemolytic uremic syndrome (aHUS).
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  • 文章类型: Journal Article
    背景:最近已显示神经元中主要组织相容性复合物I(MHC-I)的表达可调节神经突生长和突触可塑性。然而,它对神经退行性疾病如阿尔茨海默病(AD)的贡献在很大程度上仍然未知。
    方法:在本研究中,我们研究了受损的MHC-I-β2M复合物在体外和人AD样本中与AD之间的关系。通过液相色谱-串联质谱法鉴定蛋白质之间的相互作用,并通过免疫沉淀进行确认。产生MHC-I-β2M的单链三聚体以研究MHC-I-β2M复合物对NCAM1信号传导的稳定作用。
    结果:MHC-I在AD患者的大脑和用寡聚β-淀粉样蛋白(Aβ)处理的神经元细胞中不稳定。具体来说,Aβ寡聚体分解MHC-I-β2-微球蛋白(β2M)复合物,导致与神经细胞粘附分子1(NCAM1)的相互作用减少,神经元MHC-I的一种新型相互作用物,和减少信号。通过不可解离的MHC-I-β2M-肽复合物抑制MHC-I-β2M复合物去稳定化恢复了神经元细胞中的MHC-I-NCAM1信号传导。
    结论:目前的研究表明,Aβ诱导的MHC-1-NCAM1信号的破坏参与了AD的病理生理过程。此外,我们的研究结果表明,调节MHC-I稳定性可能是恢复AD突触功能的潜在治疗靶点.
    BACKGROUND: The expression of major histocompatibility complex I (MHC-I) in neurons has recently been shown to regulate neurite outgrowth and synaptic plasticity. However, its contribution to neurodegenerative diseases such as Alzheimer\'s disease (AD) remains largely unknown.
    METHODS: In this study, we investigated the relationship between impaired MHC-I-β2M complex and AD in vitro and human AD samples. Interaction between protein was identified by liquid chromatography-tandem mass spectrometry and confirmed by immunoprecipitation. Single-chain trimer of MHC-I-β2M was generated to study the effect of stabilization of MHC-I-β2M complex on NCAM1 signaling.
    RESULTS: MHC-I is destabilized in the brains of AD patients and neuronal cells treated with oligomeric β-amyloid (Aβ). Specifically, Aβ oligomers disassemble the MHC-I-β2-microglobulin (β2M) complex, leading to reduced interactions with neural cell adhesion molecule 1 (NCAM1), a novel interactor of neuronal MHC-I, and decreased signaling. Inhibition of MHC-I-β2M complex destabilization by non-dissociable MHC-I-β2M-peptide complex restored MHC-I-NCAM1 signaling in neuronal cells.
    CONCLUSIONS: The current study demonstrated that disruption of MHC-1-NCAM1 signaling by Aβ induced disassembly of MHC-I-β2M complex is involved in the pathophysiology of AD. Moreover, our findings suggest modulation of MHC-I stability may be a potential therapeutic target for restoring synaptic function in AD.
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  • 文章类型: Journal Article
    对化疗药物的耐药性限制了非小细胞肺癌(NSCLC)的化疗疗效。自噬是一种重要的耐药机制。我们之前的研究表明miR-152-3p抑制NSCLC进展。然而,miR-152-3p在自噬介导的NSCLC化疗耐药中的作用机制尚不清楚.用相关载体转染顺铂耐药细胞系(A549/DDP和H446/DDP),并接受顺铂,自噬抑制剂,活化剂,或胞外信号调节激酶(ERK)激活剂。流式细胞术,进行CCK8和集落形成测定以测试细胞凋亡和细胞活力。通过qRT-PCR或蛋白质印迹检测相关的RNA或蛋白质。染色质免疫沉淀,荧光素酶报告基因测定或RNA免疫沉淀用于验证miR-152-3p与ELF1或NCAM1之间的相互作用。CO-IP验证了NCAM1和ERK之间的结合。miR-152-3p在NSCLC顺铂耐药中的作用也在体内得到验证。成果显示miR-152-3p和ELF1在NSCLC组织中降低。MiR-152-3p通过NCAM1抑制自噬逆转顺铂耐药。NCAM1通过ERK途径促进自噬并促进顺铂耐药。ELF1通过直接与miR-152-3p启动子相互作用而正向调节miR-152-3p水平。miR-152-3p靶向NCAM1调节NCAM1水平,进而影响NCAM1与ERK1/2的结合。ELF1通过miR-152-3p/NCAM1抑制自噬并逆转顺铂耐药。MiR-152-3p抑制小鼠移植瘤的自噬和顺铂耐药。总之,我们的研究表明,在H446/DDP和A549/DDP细胞中,ELF1通过miR-152-3p/NCAM1/ERK通路抑制自噬以减弱顺铂耐药,提示非小细胞肺癌潜在的新治疗策略。
    Resistance to chemotherapeutic drugs limits the efficacy of chemotherapy in non-small cell lung cancer (NSCLC). Autophagy is an essential mechanism which involves in drug resistance. Our previous research has revealed that miR-152-3p represses NSCLC progression. However, the mechanism of miR-152-3p in autophagy-mediated chemoresistance in NSCLC remains unclear. Cisplatin-resistant cell lines (A549/DDP and H446/DDP) were transfected with related vectors and subjected to cisplatin, autophagy inhibitor, activator, or extracellular signal-regulated kinase (ERK) activator. Flow cytometry, CCK8 and colony formation assays were performed for testing apoptosis and cell viability. The related RNAs or proteins were detected by qRT-PCR or Western blot. Chromatin immunoprecipitation, luciferase reporter assay or RNA immunoprecipitation were used for validating the interaction between miR-152-3p and ELF1 or NCAM1. Co-IP verified the binding between NCAM1 and ERK. The role of miR-152-3p in cisplatin resistance of NSCLC was also validated in vivo. The results showed that miR-152-3p and ELF1 were decreased in NSCLC tissues. miR-152-3p reversed cisplatin resistance by inhibiting autophagy through NCAM1. NCAM1 promoted autophagy through the ERK pathway and facilitated cisplatin resistance. ELF1 positively regulated miR-152-3p level by directly interacting with miR-152-3p promoter. miR-152-3p targeted NCAM1 to regulate NCAM1 level and then affected the binding of NCAM1 to ERK1/2. ELF1 inhibited autophagy and reversed cisplatin resistance through miR-152-3p/NCAM1. miR-152-3p inhibited autophagy and cisplatin resistance of xenograft tumor in mice. In conclusion, our study revealed that ELF1 inhibited autophagy to attenuate cisplatin resistance through the miR-152-3p/NCAM1/ERK pathway in H446/DDP and A549/DDP cells, suggesting a potential novel treatment strategy for NSCLC.
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  • 文章类型: Journal Article
    背景:围产期情绪和焦虑障碍(PMAD)包括一系列发生在怀孕期间和产后一年的心理健康障碍,影响了大约20%的女性。传统风险因素,如抑郁症和妊娠并发症如先兆子痫(PE)的病史是已知的。它们的预测效用,然而,没有足够的特异性或敏感性,无法为PMAD的临床决策或预防策略提供信息。早期识别和转诊治疗需要更好的诊断和预后模型。
    目的:确定一组新的妊娠晚期血浆蛋白生物标志物是否可以确定谁在产后3个月内易患PMAD。
    方法:我们研究了在两个时间点进行心理健康筛查的52名女性(N=34有PMAD风险,N=18名对照),在妊娠晚期和分娩后3个月再次。PMAD风险升高是通过筛选上述验证的抑郁症临界值来定义的(爱丁堡产后抑郁量表,EPDS≥12),焦虑(总体焦虑严重程度和损害量表,OASIS≥7)和/或PTSD(事件影响量表,IES>26)在两个时间点。使用基于适体的SomaLogicSomaScan®蛋白质组学测定技术筛选在妊娠晚期收集的血浆样品,以评估PMAD相关的1,305种蛋白质分析物表达的变化。进行独创性途径分析以强调在所有PMAD受试者和具有PMAD且没有先兆子痫的那些受试者(非PEPMAD受试者)中发现显著上调或下调的PMAD特异性蛋白之间的病理生理学关系。
    结果:在主成分分析中,从53个重要的PMAD相关蛋白中,20个独特的蛋白特征将PMAD病例与对照区分开(P<0.05)。这些蛋白质包括分子,如NCAM1,NRCAM,NTRK3在神经元信号通路周围汇聚,调节轴突引导,星形胶质细胞分化和GABA能神经元的维持。有趣的是,当我们限制分析排除PE时,在主成分分析中,30蛋白特征将PMAD病例与所有对照区分开,没有重叠(P<0.001)。在非PEPMAD组中,我们观察到CXCL11,CXCL6,MIC-B等蛋白质的表达增加,β-2微球蛋白,调节白细胞迁移,炎症和免疫功能。
    结论:PMAD参与者具有独特且独特的血浆蛋白特征,可调节多种神经元信号和促炎途径。需要更大样本量的其他验证研究来确定这些分子中的一些是否可以与传统的风险因素一起用于PMAD的早期检测。
    Perinatal mood and anxiety disorders encompass a range of mental health disorders that occur during pregnancy and up to 1 year postpartum, affecting approximately 20% of women. Traditional risk factors, such as a history of depression and pregnancy complications including preeclampsia, are known. Their predictive utility, however, is not specific or sensitive enough to inform clinical decision-making or prevention strategies for perinatal mood and anxiety disorders. Better diagnostic and prognostic models are needed for early identification and referral to treatment.
    This study aimed to determine if a panel of novel third-trimester plasma protein biomarkers in pregnant women can be used to identify those who have a high predisposed risk for perinatal mood and anxiety disorders within 3 months postpartum.
    We studied 52 women (n=34 with a risk for perinatal mood and anxiety disorders and n=18 controls) among whom mental health screening was conducted at 2 time points, namely in the third trimester and again at 3 months postdelivery. An elevated perinatal mood and anxiety disorder risk was identified by screening individuals with above-validated cutoffs for depression (Edinburgh Postnatal Depression Scale ≥12), anxiety (Overall Anxiety Severity and Impairment Scale ≥7), and/or posttraumatic stress disorder (Impact of Events Scale >26) at both time points. Plasma samples collected in the third trimester were screened using the aptamer-based SomaLogic SomaScan proteomic assay technology to evaluate perinatal mood and anxiety disorder-associated changes in the expression of 1305 protein analytes. Ingenuity Pathway Analysis was conducted to highlight pathophysiological relationships between perinatal mood and anxiety disorder-specific proteins found to be significantly up- or down-regulated in all subjects with perinatal mood and anxiety disorder and in those with perinatal mood and anxiety disorders and no preeclampsia.
    From a panel of 53 significant perinatal mood and anxiety disorder-associated proteins, a unique 20-protein signature differentiated perinatal mood and anxiety disorder cases from controls in a principal component analysis (P<.05). This protein signature included NCAM1, NRCAM, and NTRK3 that converge around neuronal signaling pathways regulating axonal guidance, astrocyte differentiation, and maintenance of GABAergic neurons. Interestingly, when we restricted the analysis to subjects without preeclampsia, a 30-protein signature differentiated perinatal mood and anxiety disorder cases from all controls without overlap on the principal component analysis (P<.001). In the nonpreeclamptic perinatal mood and anxiety disorder group, we observed increased expression of proteins, such as CXCL11, CXCL6, MIC-B, and B2MG, which regulate leucocyte migration, inflammation, and immune function.
    Participants with perinatal mood and anxiety disorders had a unique and distinct plasma protein signature that regulated a variety of neuronal signaling and proinflammatory pathways. Additional validation studies with larger sample sizes are needed to determine whether some of these molecules can be used in conjunction with traditional risk factors for the early detection of perinatal mood and anxiety disorders.
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  • 文章类型: Journal Article
    从遗传和病因学研究来看,怀疑精神分裂症背后的自身免疫机制;然而,细节仍不清楚。在这项研究中,我们描述了精神分裂症患者针对神经细胞粘附分子(NCAM1)的自身抗体(5.4%,基于细胞的测定;6.7%,ELISA)在日本队列中(n=223)。抗NCAM1自身抗体破坏NCAM1-NCAM1和NCAM1-神经胶质细胞系衍生的神经营养因子(GDNF)相互作用。此外,从精神分裂症患者中纯化的抗NCAM1抗体中断NCAM1-Fyn相互作用并抑制FAK的磷酸化,MEK1和ERK1被引入小鼠的脑脊液中时,也会减少额叶皮质中的棘和突触的数量。此外,它诱导小鼠的精神分裂症相关行为,包括缺乏的脉冲前抑制和认知障碍。总之,精神分裂症患者抗NCAM1自身抗体引起精神分裂症相关行为和小鼠突触改变.这些抗体可能是潜在的治疗靶标,并作为生物标志物来区分异质性精神分裂症患者中的小但可治疗的亚组。
    From genetic and etiological studies, autoimmune mechanisms underlying schizophrenia are suspected; however, the details remain unclear. In this study, we describe autoantibodies against neural cell adhesion molecule (NCAM1) in patients with schizophrenia (5.4%, cell-based assay; 6.7%, ELISA) in a Japanese cohort (n = 223). Anti-NCAM1 autoantibody disrupts both NCAM1-NCAM1 and NCAM1-glial cell line-derived neurotrophic factor (GDNF) interactions. Furthermore, the anti-NCAM1 antibody purified from patients with schizophrenia interrupts NCAM1-Fyn interaction and inhibits phosphorylation of FAK, MEK1, and ERK1 when introduced into the cerebrospinal fluid of mice and also reduces the number of spines and synapses in frontal cortex. In addition, it induces schizophrenia-related behavior in mice, including deficient pre-pulse inhibition and cognitive impairment. In conclusion, anti-NCAM1 autoantibodies in patients with schizophrenia cause schizophrenia-related behavior and changes in synapses in mice. These antibodies may be a potential therapeutic target and serve as a biomarker to distinguish a small but treatable subgroup in heterogeneous patients with schizophrenia.
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  • 文章类型: Journal Article
    确认精神分裂症和大麻以及吸烟的共同遗传基础的存在和组成对于精神病的临床预防和干预具有重要价值。
    为了实现这一目标,我们利用精神分裂症的全基因组摘要统计(n=99,934),吸烟(n=518,633)和大麻使用(n=162,082)。我们使用总结效应估计(CAUSE)和基因组结构方程模型(GenomicSEM)进行因果分析,以量化大麻,吸烟和精神分裂症的共同遗传因素(称为SCZ_SMO)的贡献。然后确定了组成SCZ_SMO的全基因组基因座。
    我们估计SCZ_SMO解释了8.6%的精神分裂症遗传力(原因Z评分<-2.5,基因组SEM中p<10-20)。在全基因组阈值p<5×10-8时,有20个独立基因座显示与SCZ_SMO的关联。在11号染色体的顶部基因座上,精细作图将rs7945073(后验包涵概率=0.12,p=2.24×10-32)鉴定为最高风险变异。基因水平关联和精细定位强调NCAM1、PHC2和SEMA6D是SCZ_SMO的风险基因。其他风险基因在皮质中富集,神经元,和树突棘(调整后p<0.05)。SCZ_SMO与注意缺陷多动障碍的遗传风险呈显著正相关(p<10-6)(r=0.50),生活方式问题(r=0.83),社会剥夺(r=0.58)和全因妊娠损失(r=0.60)。
    我们的结果为精神分裂症与吸烟之间的关联提供了共同遗传基础模型的新证据,并提供了对其共同机制的遗传和生物学见解。
    Confirming the existence and composition of the shared genetic basis of Schizophrenia and cannabis and cigarette smoking has critical values for the clinical prevention and intervention of psychosis.
    To achieve this goal, we leveraged Genome-Wide summary statistics of Schizophrenia (n = 99,934), cigarette smoking (n = 518,633) and cannabis usage (n = 162,082). We applied Causal Analysis Using Summary Effect Estimates (CAUSE) and genomic structural equation modeling (GenomicSEM) to quantify the contribution of a common genetic factor of cannabis and cigarette smoking and schizophrenia (referred to as SCZ_SMO), then identified genome-wide loci that made up SCZ_SMO.
    We estimated that SCZ_SMO explained 8.6% of Schizophrenia heritability (Z score <-2.5 in CAUSE, p<10-20 in Genomic SEM). There were 20 independent loci showing association with SCZ_SMO at the genome-wide threshold of p<5 × 10-8. At the top locus on chromosome 11, fine-mapping identified rs7945073 (posterior inclusion probability =0.12, p = 2.24 × 10-32) as the top risk variants. Gene-level association and fine-mapping highlighted NCAM1, PHC2, and SEMA6D as risk genes of SCZ_SMO. Other risk genes were enriched in cortex, neuron, and dendritic spines (adjusted p<0.05). SCZ_SMO showed significant positive correlation (p<10-6) with the genetic risk of attention deficit hyperactivity disorder (r = 0.50), lifestyle problems (r = 0.83), social deprivation (r = 0.58) and all-cause pregnant loss (r = 0.60).
    Our result provided new evidence on the shared genetic basis model for the association between Schizophrenia and smoking and provided genetic and biological insights into their shared mechanism.
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  • 文章类型: Journal Article
    Guillain-Barré syndrome (GBS) is an acute inflammatory autoimmune and demyelinating disease of the peripheral nervous system. Currently, valid biomarkers are unavailable for the diagnosis of GBS.
    A comparative proteomics analysis was performed on the cerebrospinal fluid (CSF) from 10 patients with GBS and 10 patients with noninflammatory neurological disease (NND) using the tandem mass tags technique. The differentially expressed proteins were analyzed by bioinformatics, and then the candidate proteins were validated by the enzyme-linked immunosorbent assay method in another cohort containing 160 samples (paired CSF and plasma of 40 patients with GBS, CSF of 40 NND patients and plasma of 40 healthy individuals).
    In all, 298 proteins were successfully identified in the CSF samples, of which 97 differentially expressed proteins were identified in the GBS and NND groups. Three key molecules were identified as candidate molecules for further validation. The CSF levels of TGOLN2 and NCAM1 decreased in GBS patients compared with NND patients, whereas the CSF levels of APOC3 increased. The enzyme-linked immunosorbent assay results were consistent with our proteomics analysis. Interestingly, in the validation cohort, serum APOC3 levels in the GBS group were consistent with those in the CSF samples and significantly higher than those in the healthy control group.
    Our preliminary data suggest that the CSF protein expression profile of patients with GBS is different from that of patients with NND. Moreover, alterations of TGOLN2, NCAM1and APOC3 may be used as novel biomarkers for identifying patients with GBS.
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  • DOI:
    文章类型: Journal Article
    BACKGROUND: Cholangiocarcinoma (CHOL) is one of the most fatal malignancies worldwide. PBRM1 is a tumor suppressor gene in diverse cancers. It regulates cell cycle, genomic stability, centromeric cohesion, and apoptosis. However, its relevance to remodel tumor cell immune response of PBRM1 in CHOL remains unclear.
    METHODS: PBRM1 mutation and expression of CHOL patients were analyzed by the TCGA database using R packages and cBioPortal site. The correlation between PBRM1 and tumor cell immune infiltrates among CHOL patients was investigated by TIMER2.0. Correlation analysis between PBRM1 and gene markers of tumor-infiltrating immune cells in CHOL was analyzed by GEPIA. Pathway enrichment analysis and protein-protein interaction network of PBRM1 mutation and expression was investigated using STRING and Cytoscape.
    RESULTS: Among CHOL patients, PBRM1 has a high mutation probability and significant differential expression. Mutations and differential expression of PBRM1 both have a significant effect on the infiltration of cancer associated fibroblasts (CAF) in CHOL patients. PBRM1 was highly correlated with MMP2 and FAK, which were reported as key regulators of CAF. Through protein-protein interaction network with hub gene analysis, we discovered that NCAM1 could play key roles in the potential mechanism of how PBRM1 affects immune infiltration and progress of CHOL.
    CONCLUSIONS: PBRM1 may play an important role in immune cell infiltration, matrix formation, and tumor invasion of CHOL, by regulating the function and infiltrating of tumor stromal cells including cancer-associated fibroblasts through NCAM1. Therefore, PBRM1 might be a new therapeutic target in CHOL.
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