Molecular logic gates

分子逻辑门
  • 文章类型: Journal Article
    纳米酶是一类具有生物催化功能和类酶活性的纳米材料,其优点包括高稳定性,低成本,和大规模生产。它们可以催化基于特定纳米结构的天然酶的底物,并作为天然酶的替代品。他们的应用研究涉及生物医学等广泛领域,环境治理,农业,和食物。分子逻辑门是一门新兴的交叉学科,可以在分子尺度上模拟硅电路的功能,执行单个或多个输入逻辑运算,并生成逻辑输出。分子逻辑门是一种二进制操作,根据布尔逻辑的规则将输入信号转换为输出信号,产生两个信号,高水平,和低水平。高电平和低电平表示逻辑门的“真”和“假”值,它们的输出对应于分子逻辑门的\"l\"和\"0\",分别。纳米酶和逻辑门的结合是一个新颖而有吸引力的研究方向,两者的交叉应用为各个领域带来了新的机遇和思路,比如建造高效的生物计算机,智能药物输送系统,和疾病的精确诊断。这篇综述描述了基于纳米酶的逻辑门的应用,这有望为研究人员的后续研究提供一定的理论基础。
    Nanozymes are a class of nanomaterials with biocatalytic function and enzyme-like activity, whose advantages include high stability, low cost, and mass production. They can catalyze the substrates of natural enzymes based on specific nanostructures and serve as substitutes for natural enzymes. Their applied research involves a wide range of fields such as biomedicine, environmental governance, agriculture, and food. Molecular logic gates are a new cross-disciplinary discipline, which can simulate the function of silicon circuits on a molecular scale, perform single or multiple input logic operations, and generate logic outputs. A molecular logic gate is a binary operation that converts an input signal into an output signal according to the rules of Boolean logic, generating two signals, a high level, and a low level. The high and low levels represent the \"true\" and \"false\" values of the logic gates, and their outputs correspond to \"l\" and \"0\" of the molecular logic gates, respectively. The combination of nanozymes and logic gates is a novel and attractive research direction, and the cross-application of the two brings new opportunities and ideas for various fields, such as the construction of efficient biocomputers, intelligent drug delivery systems, and the precise diagnosis of diseases. This review describes the application of logic gates based on nanozymes, which is expected to provide a certain theoretical foundation for researchers\' subsequent studies.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    分子逻辑门是信息处理设备,可以响应环境信号,并通过布尔逻辑运算产生可读输出。具有这些性质的分子已被用于构建智能传感器和治疗剂。在这项工作中,开发了双酶响应分子与逻辑门,旨在区分酶水平和/或活性的各种组合。基于间苯二酚的传感器被自分解酪氨酸酶识别位点取代,3-羟基苄基。羟基被乙酰基部分保护,这降低了酶的亲和力。当溶液中同时存在酪氨酸酶和酯酶时,乙酰基被后一种酶去除,允许前者识别配体。酪氨酸酶对配体的氧化引发了取代的自我消融裂解,导致荧光增强近70倍。当应用单一酶时,整体发射强度没有显著变化,构造AND逻辑门。分析了传感器的选择性和米氏-Menten动力学。智能分子探针可以有助于研究生物传感器的开发,该生物传感器可以区分具有酶活性特征组合的疾病。
    Molecular logic gates are information processing devices that can respond to environmental signals and produce a readable output in response through Boolean logic operations. Molecules with these properties have been used to build smart sensors and therapeutic agents. In this work, dual enzyme-responsive molecular AND logic gate is developed with the intention to discriminate various combinations of enzyme level and/or activity. A resorufin-based sensor is substituted with self-immolative tyrosinase recognition site, 3-hydroxy benzyl group. The Hydroxyl group is protected with acetyl moiety which decreases the affinity of the enzyme. When both tyrosinase and esterase are present in the solution, the acetyl group is removed by the latter enzyme, allowing the former to recognise the ligand. Oxidation of the ligand by tyrosinase triggers self-immolative cleavage of the substitution, leading to almost 70 fold enhancement in fluorescence. When single enzyme is applied, there is no significant change in the emission intensity overall, an AND logic gate is constructed. Selectivity and Michaelis-Menten kinetics of the sensor is analysed. Smart molecular probes can contribute to the research on the development of biosensors that can discriminate diseases having characteristic combinations of enzyme activities.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    化学人工智能(CAI)是一个全新的研究线,利用分子,超分子,和湿件中的系统化学(即,在流体解决方案中)模仿人类智能的某些性能,并促进基于分子组装的非常规机器人技术,在微观世界中行动,否则很难被人类访问。人工智能研究人员可以依靠化学家和生物技术学家的帮助来实现从头开始构建智能系统的宏伟目标,这无疑是值得传播的消息。本文报告了构建化学人工智能知识图谱的首次尝试,并描述了可以通过分子和超分子化学实现的基本智能功能。化学人工智能提供了新的工具和概念来模仿人类智能,因为它共享,生物智能,同样的原理和材料。它能实现奇特的动力学,在软件和硬件域中可能无法访问。此外,化学人工智能的发展将有助于更深入地理解智能与生命之间的严格联系,这是我们称之为生物有机体的复杂系统所显示的两个最显著的新兴特性。
    Chemical Artificial Intelligence (CAI) is a brand-new research line that exploits molecular, supramolecular, and systems chemistry in wetware (i.e., in fluid solutions) to imitate some performances of human intelligence and promote unconventional robotics based on molecular assemblies, which act in the microscopic world, otherwise tough to be accessed by humans. It is undoubtedly worth spreading the news that AI researchers can rely on the help of chemists and biotechnologists to reach the ambitious goals of building intelligent systems from scratch. This article reports the first attempt at building a Chemical Artificial Intelligence knowledge map and describes the basic intelligent functions that can be implemented through molecular and supramolecular chemistry. Chemical Artificial Intelligence provides new tools and concepts to mimic human intelligence because it shares, with biological intelligence, the same principles and materials. It enables peculiar dynamics, possibly not accessible in software and hardware domains. Moreover, the development of Chemical Artificial Intelligence will contribute to a deeper understanding of the strict link between intelligence and life, which are two of the most remarkable emergent properties shown by the Complex Systems we call biological organisms.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    Over the last few years, the development of fluorescent probes has received considerable attention. Fluorescence signaling allows noninvasive and harmless real-time imaging with great spectral resolution in living objects, which is extremely useful for modern biomedical applications. This review presents the basic photophysical principles and strategies for the rational design of fluorescent probes as visualization agents in medical diagnosis and drug delivery systems. Common photophysical phenomena, such as Intramolecular Charge Transfer (ICT), Twisted Intramolecular Charge Transfer (TICT), Photoinduced Electron Transfer (PET), Excited-State Intramolecular Proton Transfer (ESIPT), Fluorescent Resonance Energy Transfer (FRET), and Aggregation-Induced Emission (AIE), are described as platforms for fluorescence sensing and imaging in vivo and in vitro. The presented examples are focused on the visualization of pH, biologically important cations and anions, reactive oxygen species (ROS), viscosity, biomolecules, and enzymes that find application for diagnostic purposes. The general strategies regarding fluorescence probes as molecular logic devices and fluorescence-drug conjugates for theranostic and drug delivery systems are discussed. This work could be of help for researchers working in the field of fluorescence sensing compounds, molecular logic gates, and drug delivery.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    开发具有最高级荧光增强因子(F/F0)的可激活荧光探针以提高信噪比(S/N)仍然是一个紧迫的问题。“AND”分子逻辑门正在成为增强探针选择性和准确性的有用工具。这里,“AND”逻辑门被开发为超级增强器,用于设计具有巨大F/F0和S/N比的可激活探针。它利用脂滴(LD)作为可控背景输入,并将目标分析物设置为可变输入。由于双重锁定,荧光非常猝灭,因此获得目标分析物的极端F/F0比。重要的是,此探针可以在响应发生后转移到LD。目标分析物可以在没有对照组的情况下通过空间位置直接可视化。因此,从头设计过氧亚硝酸盐(ONOO-)可激活探针(CNP2-B)。CNP2-B与ONOO-反应后的F/F0达到2600。此外,CNP2-B在被激活后可以从线粒体转移到脂滴。在体外和体内,CNP2-B的选择性和S/N比高于市售探针3'-(对羟基苯基)荧光素(HPF)。因此,在用原位CNP2-B探针凝胶给药后,清楚地描绘了小鼠模型中的动脉粥样硬化斑块。设想这种输入可控的“与”逻辑门以执行更多的成像任务。
    Developing activatable fluorescent probes with superlative fluorescence enhancement factor (F/F0 ) to improve the signal-to-noise (S/N) ratio is still an urgent issue. \"AND\" molecular logic gates are emerging as a useful tool for enhanced probes selectivity and accuracy. Here, an \"AND\" logic gate is developed as super-enhancers for designing activatable probes with huge F/F0 and S/N ratio. It utilizes lipid-droplets (LDs) as controllable background input and sets the target analyte as variable input. The fluorescence is tremendously quenching due to double locking, thus an extreme F/F0 ratio of target analyte is obtained. Importantly, this probe can transfer to LDs after a response occurs. The target analyte can be directly visualized through the spatial location without a control group. Accordingly, a peroxynitrite (ONOO- ) activatable probe (CNP2-B) is de novo designed. The F/F0 of CNP2-B achieves 2600 after reacting with ONOO- . Furthermore, CNP2-B can transfer from mitochondria to lipid droplets after being activated. The higher selectivity and S/N ratio of CNP2-B are obtained than commercial probe 3\'-(p-hydroxyphenyl) fluorescein (HPFin vitro and in vivo. Therefore, the atherosclerotic plaques at mouse models are delineated clearly after administration with in situ CNP2-B probe gel. Such input controllable \"AND\" logic gate is envisioned to execute more imaging tasks.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    探索具有高可靠性和高精度的智能荧光材料来诊断疾病具有重要意义,但仍然是巨大的挑战。在这里,基于配位合成后改性,制备了Tb3+官能化的ME-PA(Tb@1),它可以通过LMCT-ET过程从ME-PA到Tb3+离子发出明亮的绿色荧光。Tb@1可以同时区分色氨酸(Try)及其代谢产物5-羟基吲哚-3-乙酸(5-HIAA),两个有效的抑郁症指标,在比率和比色模式。这种传感器具有效率高、灵敏度高的优点,以及出色的可重用性和抗干扰性。从ME到Try和5-HIAA的PET工艺,分析物与Tb@1之间的竞争吸收可能与传感机理有关。在现实的血清或尿液环境中,Tb@1对Try和5-HIAA的检出限分别为0.0183和0.0149mg/L。此外,结合反向传播神经网络(BPNN),进一步设计了两个可循环计算的双输出分子逻辑门,实现了对电子元器件的智能控制,以识别两种生物标志物的存在,并从荧光图像中判断其浓度。这项工作提供了一种新颖的方法来调制基于ML辅助HOF荧光传感器的逻辑电路,具有很好的应用于精确和图像的抑郁症诊断。本文受版权保护。保留所有权利。
    Exploring intelligent fluorescent materials with high reliability and precision to diagnose diseases is significant but remains a great challenge. Herein, based on coordination post-synthetic modification, a Tb3+ functionalized ME-PA (Tb@1) is prepared, which can emit brilliant green fluorescence through ligand-to-mental charge transfer-assisted energy transfer (LMCT-ET) process from ME-PA to Tb3+ ions. Tb@1 can simultaneously distinguish Tryptophan (Try) and its metabolite 5-hydroxyindole-3-acetic acid (5-HIAA), two effective indicators for depression, in ratio and colorimetric mode. And this sensor behaves the advantages of high efficiency and sensitivity, as well as excellent reusability and anti-interference. The PET process from ME to Try and 5-HIAA, and the competitive absorption between analytes and Tb@1 may be relevant to sensing mechanism. In realistic serum or urine environment, the detection limits of Tb@1 for Try and 5-HIAA are 0.0183 and 0.0149 mg L-1 respectively. Moreover, in conjunction with back propagation neural network (BPNN), two dual-output molecular logic gates that can be calculated circularly are further designed, which realizes intelligent control of the electronic component to identify the existence of two biomarkers and judge their concentrations from fluorescence images. This work offers a novel approach to modulate logic circuits based on ML-assisted HOF fluorescent sensor, with promising application for a precise and pictorial depression diagnosis.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    将乙基(羟乙基)纤维素(EHEC)和基于二氧化硅的干凝胶(SBX)用(18-冠-6)-苯乙烯基吡啶前体(1)官能化,以分别获得改性聚合物EHEC-1和SBX-1。获得膜,并将所得材料用作荧光装置,用于检测水中的Hg2+。由EHEC-1生产的薄膜显示出高的保水性,使其难以作为可重复使用的光学化学传感器应用。由于SBX的疏水性在文献中得到认可,制备并表征由EHEC和SBX-1组成的不显示保水性的杂化膜。该系统显示出快速的响应时间,与其他几种研究的金属离子相比,具有出色的选择性,和灵敏度检测水中的Hg2+。使用荧光技术对该材料的检出限为2ppb(〜10-8molL-1)。通过向培养基中添加半胱氨酸证明了EHEC-SBX-1膜与Hg2之间形成的复合物的可逆性。获得的结果还允许组装抑制和暗示分子逻辑门,使用Hg2+和半胱氨酸作为输入。本文描述的结果对开发用于有效去除Hg2离子的新型可逆荧光化学传感器和吸附材料具有重要意义。
    Ethyl(hydroxyethyl)cellulose (EHEC) and a silica-based xerogel (SBX) were functionalized with a (18-crown-6)-styrylpyridine precursor (1) to obtain the modified polymers EHEC-1 and SBX-1, respectively. Films were obtained and the resulting materials were used as fluorogenic devices for the detection of Hg2+ in water. The films produced from EHEC-1 showed high water retention, making it difficult to apply as a reusable optical chemosensor. Since SBXs are recognized in the literature for their hydrophobicity, a hybrid film composed of EHEC and SBX-1 which did not show water retention was produced and characterized. This system showed rapid response time, outstanding selectivity compared to several other studied metal ions, and sensitivity for the detection of Hg2+ in water. The detection limit for this material using fluorescence technique was 2 ppb (∼10-8 mol L-1). The reversibility of the complex formed between EHEC-SBX-1 film and Hg2+ was demonstrated by the addition of cysteine to the medium. The result obtained also allowed the assembly of INHIBIT and IMPLICATION molecular logic gates, using Hg2+ and cysteine as inputs. The results described in this article have important significance in the development of novel reversible fluorogenic chemosensors and adsorbent materials for the effective removal of Hg2+ ions.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    在目前的工作中,精心设计了包含“Y”结结构的G-四链体,我们演示了几个新的和无标签的电化学逻辑门操作(OR,AND,NOR,和NAND)通过定义两个不同的生物分子,人8-氧代-7,8-二氢鸟嘌呤DNA糖基化酶1(hOGG1)和microRNA-141(miRNA-141),作为输入。\"Y\"连接结构固定在金电极表面作为信号转导平台。具有不同组合的输入分子的存在可以改变\“Y\”连接结构,从而通过8-oxoG位点特异性裂解和miRNA-141触发的\“Y\”置换破坏完整G-四链体的形成连接。因此,血红素与G-四链体序列的随后结合在电极上的血红素的电化学还原后产生了显着的电流变化输出。导致不同逻辑运算的成功功能,而无需用电活性物质标记DNA序列。具有具有不同输入和无标签电化学格式的多种逻辑运算的优点,这种分子逻辑门可以潜在地为开发用于各种应用的简单和强大的生物逻辑门提供有希望的机会。
    In current work, with elaborate designs of G-quadruplex containing \"Y\" junction structures, we demonstrate the construction of several new and label-free electrochemical logic gate operations (OR, AND, NOR, and NAND) by defining two distinct biomolecules, human 8-oxo-7,8-dihydroguanine DNA glycosylase 1 (hOGG1) and microRNA-141 (miRNA-141), as the inputs. The \"Y\" junction structures are immobilized onto the surface of gold electrode as the signal transduction platform. The presence of the input molecules with different combinations can alter the \"Y\" junction structures to disrupt the formation of the complete G-quadruplexes via 8-oxoG-site specific cleavage and miRNA-141-triggered displacement of the \"Y\" junctions. Subsequent association of hemin with the G-quadruplex sequences thus yields significant current variation outputs upon electrochemical reduction of hemin on the electrode, leading to the successful function of different logic operations without the involvement of labeling the DNA sequences with electro-active species. Featured with the advantages of multiple logic operations with distinct inputs and the label-free electrochemical format, such molecular logic gates can potentially provide promising opportunities for the development of simple and robust biological logic gates for various applications.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    对大规模集成逻辑系统的需求不断增长,促使多读出分子逻辑门的发展。尤其是,探索同时具有荧光(FL)和磁共振(MR)信号作为可测量输出的双读出逻辑器件具有重要意义,因为FL/MR的信号组合可能使分子逻辑设备在生物医学应用中具有更好的实用性。在这项研究中,掺钬(III)的碳纳米点(Ho-CD),在FL和MR信号中均表现出pH响应行为,通过简单的一锅热解法合成。当被H+触发时,Fe3+,或Fe2+,Ho-CD用作FL和MR信号的开关,导致双读出和多寻址逻辑门。一系列基本布尔运算,包括YES,NOT,OR,NOR,XOR,通过改变H+/Fe3+/Fe2+的化学输入,已经成功地证明了PASS0和INH。更重要的是,具有更高函数(NOR-INH和MR(XOR+INH)-OR)的多级积分布尔运算,实现不同逻辑门的串联,也得到了成功的证明。这项研究可能为多层次设计铺平道路,双读出分子逻辑系统具有更好的操作稳定性,这在未来的生物医学应用中具有巨大的潜力。
    The increasing demand for large-scale integrated logic systems urges the development of multireadout molecular logic gates. Especially, it is of great significance to explore dual-readout logic devices with both fluorescence (FL) and magnetic resonance (MR) signals as measurable outputs, since the signal combination of FL/MR might render molecular logic devices better practicality in biomedical applications. In this study, holmium(III)-doped carbon nanodots (Ho-CDs), which exhibited pH-responsive behaviors in both FL and MR signals, were synthesized by a facile one-pot pyrolysis method. When triggered by H+, Fe3+, or Fe2+, the Ho-CDs served as a switch for both FL and MR signals, leading to dual-readout and multiaddressable logic gates. A series of elementary Boolean operations including YES, NOT, OR, NOR, XOR, PASS 0, and INH have been successfully demonstrated by varying the chemical inputs of H+/Fe3+/Fe2+. More importantly, multilevel integrative Boolean operations with higher functions (NOR-INH and MR (XOR + INH)-OR), which realize the concatenation of different logic gates, have also been successfully demonstrated. This study may pave an avenue to design multilevel, dual-readout molecular logic systems with better operation stability, which hold great potential for biomedical applications in the future.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Sci-hub)

  • 文章类型: Journal Article
    The widespread use of antibiotics caused severe problems of antibiotic residues in foodstuffs and water, posing a serious threat to public health and thus urging the development of sensitive, selective, and rapid detection methods for antibiotics. In this study, a fluorescence resonance energy transfer (FRET)-based system is developed for the multiplexed analysis of chloramphenicol (CAP) and streptomycin (Strep) with detection limits of 2.51 and 8.69μg l-1, respectively. The FRET-based system consists of Cy3-tagged anti-CAP aptamer-conjugated gold nanoparticles (AuNPs) (referred to as AuNPs-AptCAP) and Cy5-tagged anti-Strep aptamer-conjugated AuNPs (referred to as AuNPs-AptStrep). In addition, AuNPs-AptCAP and AuNPs-AptStrep have been demonstrated to serve as signal transducers for implementing a series of logic operations such as YES, NOT, INH, OR, (2-4)-Decoder and even more complicated multi-level logic gates (OR-INH). Based on the outputs of logic operations, it could be figured out whether targeted analytes were present or not, thus enabling multiplex sensing and evaluation of pollution status. This proof of concept study might provide a new route for the enhanced sensing performance to distinguish different pollution status as well as the design of molecular mimics of logic elements to demonstrate better applicability.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

公众号