Mitochondrial energy metabolism

  • 文章类型: Journal Article
    CD44基因是动物生理过程中的关键因素,并已显示影响哺乳动物的胰岛素抵抗和脂肪积累。然而,关于其在肉牛脂质代谢和成脂分化中的精确功能的研究很少。本研究分析了CD44和miR-199a-3p在牛前脂肪细胞分化过程中的表达。荧光素酶报告基因测定证明CD44是miR-199a-3p的直接靶标。增加脂滴和甘油三酯水平的积累,脂肪酸代谢改变,和加速的前脂肪细胞分化都是由miR-199a-3p的上调或CD44表达的减少引起的。CD44敲低上调脂肪细胞特异性基因(LPL和FABP4)的表达并改变脂质代谢物的水平(SOPC,l-精氨酸,和十七烷酸)。多组学突出了参与能量代谢的丰富途径(MAPK,cAMP,和钙信号)以及线粒体呼吸和糖酵解的变化,表明CD44在脂质代谢中起调节作用。研究结果表明,细胞内脂肪分解,糖酵解,线粒体呼吸,脂肪沉积,和脂滴组成都受到miR-199a-3p的影响,它调节牛脂肪细胞中的CD44。
    The CD44 gene is a critical factor in animal physiological processes and has been shown to affect insulin resistance and fat accumulation in mammals. Nevertheless, little research has been conducted on its precise functions in lipid metabolism and adipogenic differentiation in beef cattle. This study analyzed the expression of CD44 and miR-199a-3p during bovine preadipocyte differentiation. The luciferase reporter assay demonstrated that CD44 was a direct target of miR-199a-3p. Increased accumulation of lipid droplets and triglyceride levels, altered fatty acid metabolism, and accelerated preadipocyte differentiation were all caused by the upregulation of miR-199a-3p or a reduction in CD44 expression. CD44 knockdown upregulated the expression of adipocyte-specific genes (LPL and FABP4) and altered the levels of lipid metabolites (SOPC, l-arginine, and heptadecanoic acid). Multiomics highlights enriched pathways involved in energy metabolism (MAPK, cAMP, and calcium signaling) and shifts in mitochondrial respiration and glycolysis, indicating that CD44 plays a regulatory role in lipid metabolism. The findings show that intracellular lipolysis, glycolysis, mitochondrial respiration, fat deposition, and lipid droplet composition are all impacted by miR-199a-3p, which modulates CD44 in bovine adipocytes.
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  • 文章类型: Journal Article
    阿尔茨海默病(AD)是一种神经退行性疾病。线粒体能量代谢和p70核糖体蛋白S6激酶(p70S6K)在AD病理中发挥重要作用。然而,它们之间的潜在关系尚不清楚。在这项研究中,生物信息学方法最初用于分析患有AD和Aβ42处理的SH-SY5Y细胞的患者的CA1和初级视觉皮层中的转录组数据。通过在细胞中应用分泌的Aβ42和p70S6K基因沉默,我们通过流式细胞术探索线粒体功能紊乱和p70S6K的调节作用,激光扫描共聚焦显微镜,高效液相色谱法,西方印迹,和定量逆转录PCR。该研究表明,线粒体能量代谢受损是AD的潜在病理特征,p70S6K基因沉默逆转了Aβ42诱导的大部分变化,如电子传递链复合物I和III的活性,以及ATP合成酶,ATP生产,产生活性氧,线粒体膜电位,和AMPK的磷酸化,PINK1和Parkin,所有这些都是线粒体在细胞中正常运作所必需的。
    Alzheimer\'s disease (AD) is a neurodegenerative disease. Mitochondrial energy metabolism and p70 ribosomal protein S6 kinase (p70S6K) play significant roles in AD pathology. However, the potential relationship between them is unclear. In this study, bioinformatics methods were initially applied to analyze the transcriptomic data in the CA1 and the primary visual cortex of patients with AD and Aβ42-treated SH-SY5Y cells. By applying secreted Aβ42 and p70S6K gene silencing in cells, we explored disorders in mitochondrial function and the regulatory roles of p70S6K by flow cytometry, laser scanning confocal microscopy, high-performance liquid chromatography, Western blotting, and quantitative reverse transcription PCR. The study reveals that impaired mitochondrial energy metabolism is a potential pathological feature of AD and that p70S6K gene silencing reversed most of the changes induced by Aβ42, such as the activities of the electron transport chain complexes I and III, as well as ATP synthase, ATP production, generation of reactive oxygen species, mitochondrial membrane potential, and phosphorylation of AMPK, PINK1, and Parkin, all of which are required for mitochondria to function properly in the cell.
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  • 文章类型: Journal Article
    聚丙烯微塑料(PP-MPs)是在各种环境基质和生物体中常见的新兴污染物,虽然它们的副作用和机制尚不清楚。这里,从受精后2小时(hpf)到120hpf,斑马鱼胚胎暴露于环境相关浓度的PP-MPs(0.08-50mg/L)。结果表明,体重在2mg/L时增加,心率在0.08和10mg/L时降低,行为在0.4、10或50mg/L时受损。随后,在0.4和50mg/LPP-MPs治疗组中的转录组学分析显示对糖酵解/糖异生和氧化磷酸化途径的潜在抑制。这些发现通过与葡萄糖代谢相关的多种生物标志物的改变得到了验证。此外,0.4和50mg/LPP-MPs治疗组肠道和肝脏线粒体超微结构异常,伴随着四个线粒体电子传递链复合物的活性和ATP含量的显着降低。氧化应激也被诱导,如显着增加的ROS水平和显着降低的CAT和SOD和GSH含量的活性所示。所有结果表明,环境相关浓度的PP-MPs可以诱导斑马鱼线粒体能量代谢中断,这可能与观察到的行为障碍有关。这项研究将为PP-MPs引起的不良反应提供新的见解,并强调需要进一步研究。
    Polypropylene microplastics (PP-MPs) are emerging pollutant commonly detected in various environmental matrices and organisms, while their adverse effects and mechanisms are not well known. Here, zebrafish embryos were exposed to environmentally relevant concentrations of PP-MPs (0.08-50 mg/L) from 2 h post-fertilization (hpf) until 120 hpf. The results showed that the body weight was increased at 2 mg/L, heart rate was reduced at 0.08 and 10 mg/L, and behaviors were impaired at 0.4, 10 or 50 mg/L. Subsequently, transcriptomic analysis in the 0.4 and 50 mg/L PP-MPs treatment groups indicated potential inhibition on the glycolysis/gluconeogenesis and oxidative phosphorylation pathways. These findings were validated through alterations in multiple biomarkers related to glucose metabolism. Moreover, abnormal mitochondrial ultrastructures were observed in the intestine and liver in 0.4 and 50 mg/L PP-MPs treatment groups, accompanied by significant decreases in the activities of four mitochondrial electron transport chain complexes and ATP contents. Oxidative stress was also induced, as indicated by significantly increased ROS levels and significant reduced activities of CAT and SOD and GSH contents. All the results suggested that environmentally relevant concentrations of PP-MPs could induce disrupted mitochondrial energy metabolism in zebrafish, which may be associated with the observed behavioral impairments. This study will provide novel insights into PP-MPs-induced adverse effects and highlight need for further research.
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  • 文章类型: Journal Article
    根据线粒体能量代谢和免疫疗法敏感性确定肺腺癌(LUAD)患者的亚型对于精准癌症治疗至关重要。
    使用无监督共识聚类识别LUAD亚型,并对结果进行免疫和肿瘤突变分析.通过差异分析鉴定亚型之间的DEGs。进行了功能富集和PPI网络分析。根据前10个hub基因的表达将患者分为高表达组和低表达组,并进行生存分析。根据hub基因表达与药物IC50值的相关性筛选对特征基因敏感的药物。qRT-PCR和westernblot用于基因表达检测,CCK-8和流式细胞术用于细胞活力和凋亡分析。
    Cluster-1具有明显更高的总生存率和更高的免疫浸润和免疫表型评分,但是潮汐得分较低,深度得分,和TMB。富集分析表明,两个簇之间的DEGs通路和功能主要与受体配体与细胞内蛋白酶的相互作用有关。hub基因的高表达对应于较低的患者存活率。对特征基因敏感性较高的预测药物为CDK1:利巴韦林(0.476),CCNB2:羟基脲(0.474),白屈菜红碱(0.470),和KIF11:利巴韦林(0.471)。KIF11和CCNB2在LUAD细胞中高表达,促进细胞活力,抑制细胞凋亡。
    这项研究确定了LUAD的两个亚型,Cluster-1更适合免疫治疗。本研究结果为LUAD患者的精准免疫治疗提供了参考。
    UNASSIGNED: Identifying subtypes of lung adenocarcinoma (LUAD) patients based on mitochondrial energy metabolism and immunotherapy sensitivity is essential for precision cancer treatment.
    UNASSIGNED: LUAD subtypes were identified using unsupervised consensus clustering, and results were subjected to immune and tumor mutation analyses. DEGs between subtypes were identified by differential analysis. Functional enrichment and PPI network analyses were conducted. Patients were classified into high and low expression groups based on the expression of the top 10 hub genes, and survival analysis was performed. Drugs sensitive to feature genes were screened based on the correlation between hub gene expression and drug IC50 value. qRT-PCR and western blot were used for gene expression detection, and CCK-8 and flow cytometry were for cell viability and apoptosis analysis.
    UNASSIGNED: Cluster-1 had significantly higher overall survival and a higher degree of immunoinfiltration and immunophenotypic score, but a lower TIDE score, DEPTH score, and TMB. Enrichment analysis showed that pathways and functions of DEGs between two clusters were mainly related to the interaction of receptor ligands with intracellular proteases. High expression of hub genes corresponded to lower patient survival rates. The predicted drugs with high sensitivity to feature genes were CDK1: Ribavirin (0.476), CCNB2: Hydroxyurea (0.474), Chelerythrine (0.470), and KIF11: Ribavirin (0.471). KIF11 and CCNB2 were highly expressed in LUAD cells and promoted cell viability and inhibited cell apoptosis.
    UNASSIGNED: This study identified two subtypes of LUAD, with cluster-1 being more suitable for immunotherapy. These results provided a reference for the development of precision immunotherapy for LUAD patients.
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  • 文章类型: Journal Article
    本研究的主要目的是探讨针刺通过单磷酸活化蛋白激酶(AMPK)/过氧化物酶体增殖物激活受体-γ共激活因子1α(PGC-1α)轴调节线粒体能量代谢在大鼠缺血性中风急性期抗神经损伤的作用及机制。
    通过大脑中动脉闭塞/再灌注建立大脑中动脉闭塞(MCAO)。在缺血性中风的急性期进行为期一周的针刺。评估神经功能和脑组织完整性。通过酶化学检测线粒体功能(细胞内ATP水平和线粒体呼吸链复合物I的活性)和NADH氧化酶(NOX)的水平。接下来,通过蛋白质印迹法探索了潜在的分子机制,荧光定量PCR和免疫组织化学方法。
    (1)针刺治疗MCAO/R大鼠显示梗死组织显著改善,同时Zea-Longa评分和平衡梁评分结果功能恢复,电机功能性能。(2)针刺增加ATP和线粒体呼吸链复合物I的水平,通过线栓法建立的脑缺血中NOX水平降低。(3)针刺减少了神经细胞的坏死溶解和脑膜水肿,同时促进血管生成。(4)定量免疫组织化学染色结果显示针刺可以增加AMPK的表达,p-AMPK与线粒体转录因子PGC-1α,NRF2、TFAM和解偶联蛋白2(UCP2)。同时,针刺治疗上调相应蛋白的表达。(5)随后,针刺增强AMPK磷酸化及PGC-1α的表达,NRF2、TFAM和UCP2参与线粒体合成和细胞凋亡。(6)最后,注射AMPK拮抗剂和激活剂证实AMPK是针灸抗神经损伤作用的治疗靶标。
    针刺干预通过促进脑内能量代谢和线粒体生物合成,减轻神经元凋亡,减轻MCAO大鼠缺血性中风的进展,通过引发AMPK/PGC-1α轴介导,其中AMPK是治疗靶点。
    UNASSIGNED: The main objective of this study was to investigate the role and mechanism of acupuncture on anti-nerve injury in the acute phase by regulating mitochondrial energy metabolism via monophosphate-activated protein kinase (AMPK)/peroxisome proliferator-activated receptor-γ coactivator 1α (PGC-1α) axis in rat ischemic stroke.
    UNASSIGNED: Middle cerebral artery occlusion (MCAO) was established by middle cerebral artery occlusion/reperfusion. One-week of acupuncture was performed during the acute phase of ischemic stroke. The neurological function and brain tissue integrity were evaluated. Mitochondrial function (intracellular ATP level and the activity of mitochondrial respiratory chain complex I) and the level of NADH oxidase (NOX) were detected by enzymatic chemistry. Next, the potential molecular mechanisms were explored by western blotting, fluorescence quantitative PCR and immunohistochemistry method.
    UNASSIGNED: (1) Acupuncture treatment for MCAO/R rats showed a significant improvement in the infarcted tissue accompanied by functional recovery in Zea-Longa score and balance beam score outcomes, motor function performances. (2) Acupuncture increased the levels of ATP and mitochondrial respiratory chain complex I, decreased the NOX levels in cerebral ischemia established by suture-occluded method. (3) Acupuncture reduced the necrosis dissolution of neuronal cells and meningeal edema, while promoting angiogenesis. (4) Quantitative immunohistochemical staining results showed acupuncture can increase the expression of AMPK, p-AMPK and the mitochondrial transcription factor PGC-1α, NRF2, TFAM and uncoupling protein 2 (UCP2). Meanwhile, acupuncture treatment up-regulated the expression of the corresponding protein. (5) Subsequently, acupuncture enhanced AMPK phosphorylation as well as the expression of PGC-1α, NRF2, TFAM and UCP2, implicated in mitochondrial synthesis and cellular apoptosis. (6) Finally, injections of AMPK antagonists and activators confirmed AMPK as a therapeutic target for the anti-nerve damage effects of acupuncture.
    UNASSIGNED: Acupuncture intervention relieved ischemic stroke progression in MCAO rats by promoting energy metabolism and mitochondrial biogenesis in the brain and alleviating neuronal apoptosis, which was mediated by eliciting AMPK/PGC-1α axis, among them AMPK is a therapeutic target.
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  • 文章类型: Journal Article
    本研究观察三七对阿霉素诱导的肾纤维化血瘀证大鼠模型磷脂酰肌醇3-激酶(PI3K)/蛋白激酶B(Akt)/哺乳动物雷帕霉素靶蛋白复合物1(mTORC1)信号通路及线粒体能量代谢的影响,探讨三七对肾脏的保护作用机制。将30只阿霉素诱导的雄性大鼠随机分为模型,低,medium-,和大剂量三七,阳性对照组(n=6)。选用6只干净SD雄性年夜鼠进入正常组。正常组和模型组给予生理盐水,和其他组相应的药物。治疗8周后,肾功能,肾脏病理学,三磷酸腺苷(ATP)水平,Na~+-K~+-ATP酶和Ca~(2+)-Mg~(2+)-ATP酶活性,和ATP5B的蛋白质水平,mTORC1,70kDa核糖体蛋白S6激酶(P70S6K),P85,Akt,p-Akt,测定肾组织中含有SH2的肌醇磷酸酶(SHIP2)。与正常组相比,模型组血尿素氮(BUN)和血肌酐(SCr)水平升高(P<0.01)。与模型组相比,三七和阳性对照降低了BUN和SCr的水平,中、高剂量诺参组及阳性对照组差异有统计学意义(P<0.05)。与模型组相比,三七和阳性对照减轻了肾组织的病理变化,如空泡和纤维瘤的变化,肾小球萎缩,肾小管囊性扩张,大量的炎症细胞浸润.与正常组相比,模型组大鼠肾组织线粒体ATP含量、Na~+-K~+-ATP酶和Ca~(2+)-Mg~(2+)-ATP酶活性降低(P<0.05),中、高剂量三七和阳性对照可缓解这种下降(P<0.05)。与模型组相比,中、高剂量三七和阳性对照上调ATP5B和SHIP2的蛋白水平,下调mTORC1、P70S6K的蛋白水平,P85,Akt,和p-Akt(P<0.05或P<0.01或P<0.001)。三七可能通过抑制PI3K/Akt/mTORC1通路的激活恢复线粒体能量代谢而发挥抗纤维化作用,从而保护肾脏。
    This study observed the effects of Notoginseng Radix et Rhizoma on the phosphatidylinositol 3-kinase(PI3K)/protein kinase B(Akt)/mammalian target of rapamycin complex 1(mTORC1) signaling pathway and mitochondrial energy metabolism in the rat model of adriamycin-induced renal fibrosis with blood stasis syndrome to explore the mechanism of Notoginseng Radix et Rhizoma in protecting the kidney. Thirty male rats with adriamycin-induced renal fibrosis were randomized into model, low-, medium-, and high-dose Notoginseng Radix et Rhizoma, and positive control groups(n=6). Six clean SD male rats were selected into the normal group. The normal group and model group were administrated with normal saline, and other groups with corresponding drugs. After 8 weeks of treatment, the renal function, renal pathology, adenosine triphosphate(ATP) levels, Na~+-K~+-ATPase and Ca~(2+)-Mg~(2+)-ATPase activities, and the protein levels of ATP5B, mTORC1, 70 kDa ribosomal protein S6 kinase(P70S6K), P85, Akt, p-Akt, and SH2-containing inositol phosphatase(SHIP2) in the renal tissue were determined. Compared with the normal group, the model group showed elevated levels of blood urea nitrogen(BUN) and serum creatinine(SCr)(P<0.01). Compared with the model group, Notoginseng Radix et Rhizoma and the positive control lowered the levels of BUN and SCr, which were significant in the medium-and high-dose Noto-ginseng Radix et Rhizoma groups and the positive control group(P<0.05). Compared with the model group, Notoginseng Radix et Rhizoma and the positive control alleviated the pathological changes in the renal tissue, such as vacuolar and fibroid changes, glomerulus atrophy, cystic expansion of renal tubules, and massive infiltration of inflammatory cells. Compared with the normal group, the model group showed decreased mitochondrial ATP content and Na~+-K~+-ATPase and Ca~(2+)-Mg~(2+)-ATPase activities in the renal tissue(P<0.05), and medium-and high-dose Notoginseng Radix et Rhizoma and positive control mitigated such decreases(P<0.05). Compared with the model group, medium-and high-dose Notoginseng Radix et Rhizoma and the positive control up-regulated the protein levels of ATP5B and SHIP2 and down-regulated the protein levels of mTORC1, P70S6K, P85, Akt, and p-Akt(P<0.05 or P<0.01 or P<0.001). Notoginseng Radix et Rhizoma may exert an anti-fibrosis effect by inhibiting the activation of the PI3K/Akt/mTORC1 pathway to restore mitochondrial energy metabolism, thus protecting the kidney.
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  • 文章类型: Journal Article
    糖尿病足溃疡(DFU)是糖尿病患者的高度病态并发症,有必要开发创新药物以满足未满足的医疗需求。钠离子(Na)是膜电位和渗透平衡的公认介质。最近,Na+转运蛋白已被确定为再生的功能调节剂。然而,Na+在哺乳动物伤口复杂的愈合过程中的作用仍然难以捉摸。这里,我们发现低钠血症小鼠的皮肤伤口表现出难以治愈的表型.用于增加细胞内Na+含量的Na+离子载体可以促进角质形成细胞增殖和迁移。促进血管生成,表现出多种生物活性。其中,莫能菌素A成为加速糖尿病皮肤伤口愈合动力学的有前途的药物。机械上,升高的线粒体Na+降低了线粒体内膜的流动性,促进活性氧(ROS)的产生,被确定为莫能菌素A诱导的伤口愈合改善的关键效应物。同时,Na+离子载体向线粒体基质补充H+,导致线粒体能量代谢的增强,以支持生产性伤口愈合计划。我们的研究揭示了Na+的新作用,这是伤口愈合的关键决定因素。此外,它指导了开发Na+离子载体作为治疗糖尿病患者慢性皮肤伤口的创新药物的路线图。
    Diabetic foot ulcer (DFU) is a highly morbid complication in patients with diabetes mellitus, necessitating the development of innovative pharmaceuticals to address unmet medical needs. Sodium ion (Na+) is a well-established mediator for membrane potential and osmotic equilibrium. Recently, Na+ transporters have been identified as a functional regulator of regeneration. However, the role of Na+ in the intricate healing process of mammalian wounds remains elusive. Here, we found that the skin wounds in hyponatremic mice display a hard-to-heal phenotype. Na+ ionophores that were employed to increase intracellular Na+ content could facilitate keratinocyte proliferation and migration, and promote angiogenesis, exhibiting diverse biological activities. Among of them, monensin A emerges as a promising agent for accelerating the healing dynamics of skin wounds in diabetes. Mechanistically, the elevated mitochondrial Na+ decelerates inner mitochondrial membrane fluidity, instigating the production of reactive oxygen species (ROS), which is identified as a critical effector on the monensin A-induced improvement of wound healing. Concurrently, Na+ ionophores replenish H+ to the mitochondrial matrix, causing an enhancement of mitochondrial energy metabolism to support productive wound healing programs. Our study unfolds a new role of Na+, which is a pivotal determinant in wound healing. Furthermore, it directs a roadmap for developing Na+ ionophores as innovative pharmaceuticals for treating chronic dermal wounds in diabetic patients.
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  • 文章类型: Journal Article
    我们在体内和体外建立了心肌损伤模型,以研究五味子的gomisinD对心脏的保护作用。GomisinD明显抑制异丙肾上腺素诱导的H9C2细胞凋亡和肥大。GomisinD降低血清BNP,ANP,CK-MB,cTn-T水平和组织病理学改变,抑制小鼠心肌肥厚。在机制研究中,gomisinD逆转ISO诱导的细胞内ROS和Ca2积累。GomisinD通过调节TCA循环进一步改善线粒体能量代谢障碍。这些结果表明,gomisinD通过抑制氧化应激对异丙肾上腺素引起的心肌损伤具有明显的作用。钙超载和改善线粒体能量代谢。
    We established myocardial injury models in vivo and in vitro to investigate the cardioprotective effect of gomisin D obtained from Schisandra chinensis. Gomisin D significantly inhibited isoproterenol-induced apoptosis and hypertrophy in H9C2 cells. Gomisin D decreased serum BNP, ANP, CK-MB, cTn-T levels and histopathological alterations, and inhibited myocardial hypertrophy in mice. In mechanisms research, gomisin D reversed ISO-induced accumulation of intracellular ROS and Ca2+. Gomisin D further improved mitochondrial energy metabolism disorders by regulating the TCA cycle. These results demonstrated that gomisin D had a significant effect on isoproterenol-induced myocardial injury by inhibiting oxidative stress, calcium overload and improving mitochondrial energy metabolism.
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  • 文章类型: Journal Article
    背景:胰腺腺癌(PAAD)是一种高度恶性的胃肠道肿瘤,在全球范围内预后不良。考虑到线粒体代谢对胰腺癌预后的影响,我们旨在建立与线粒体能量代谢相关的预后基因标记,以预测PAAD患者的生存概率.方法:基因表达数据来自癌症基因组图谱和基因表达综合数据库,并从GeneCards数据库获得线粒体能量代谢相关基因。基于线粒体能量代谢评分(MMs),使用ssGSEA为MMs高组和MMs低组建立了差异表达的MMRGs。在单变量Cox和最小绝对和选择算子(LASSO)分析之后,在多变量Cox比例回归模型中使用了预后MMRG特征.进行存活和免疫细胞浸润分析。此外,基于风险模型的列线图用于预测PAAD患者的生存概率.最后,用定量聚合酶链反应和免疫组织化学染色验证关键基因的表达。进行内体细胞实验以评估胰腺癌细胞的增殖和侵袭。结果:构建了由两个线粒体能量代谢相关基因(MMP11,COL10A1)组成的预后标签。校准和受试者工作特征(ROC)曲线验证了风险模型对PAAD患者生存率的良好可预测性。最后,免疫相关分析解释了基于风险模型的两个亚组之间免疫状态的差异。高风险评分组显示更高的估计,免疫,和基质分数,八个检查点基因的表达,和M0巨噬细胞的浸润,这可能表明对免疫疗法的有益反应。qPCR结果证实MMP11在胰腺癌细胞系中高表达,和IHC也证实了临床胰腺导管腺癌组织中MMP11的高表达。体外细胞实验也证明了MMP11在细胞增殖和侵袭中的作用。结论:我们的研究提供了一种新的基于MMRGs的双预后基因标签,可以准确预测PAAD患者的生存率,并可用于未来的线粒体能量代谢相关治疗。
    Background: Pancreatic adenocarcinoma (PAAD) is a highly malignant gastrointestinal tumor and is associated with an unfavorable prognosis worldwide. Considering the effect of mitochondrial metabolism on the prognosis of pancreatic cancer has rarely been investigated, we aimed to establish prognostic gene markers associated with mitochondrial energy metabolism for the prediction of survival probability in patients with PAAD. Methods: Gene expression data were obtained from The Cancer Genome Atlas and Gene Expression Omnibus databases, and the mitochondrial energy metabolism-related genes were obtained from the GeneCards database. Based on mitochondrial energy metabolism score (MMs), differentially expressed MMRGs were established for MMs-high and MMs-low groups using ssGSEA. After the univariate Cox and least absolute and selection operator (LASSO) analyses, a prognostic MMRG signature was used in the multivariate Cox proportional regression model. Survival and immune cell infiltration analyses were performed. In addition, a nomogram based on the risk model was used to predict the survival probability of patients with PAAD. Finally, the expression of key genes was verified using quantitative polymerase chain reaction and immunohistochemical staining. Intro cell experiments were performed to evaluated the proliferation and invasion of pancreatic cancer cells. Results: A prognostic signature was constructed consisting of two mitochondrial energy metabolism-related genes (MMP11, COL10A1). Calibration and receiver operating characteristic (ROC) curves verified the good predictability performance of the risk model for the survival rate of patients with PAAD. Finally, immune-related analysis explained the differences in immune status between the two subgroups based on the risk model. The high-risk score group showed higher estimate, immune, and stromal scores, expression of eight checkpoint genes, and infiltration of M0 macrophages, which might indicate a beneficial response to immunotherapy. The qPCR results confirmed high expression of MMP11 in pancreatic cancer cell lines, and IHC also verified high expression of MMP11 in clinical pancreatic ductal adenocarcinoma tissues. In vitro cell experiments also demonstrated the role of MMP11 in cell proliferation and invasion. Conclusion: Our study provides a novel two-prognostic gene signature-based on MMRGs-that accurately predicted the survival of patients with PAAD and could be used for mitochondrial energy metabolism-related therapies in the future.
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  • 文章类型: Journal Article
    LC-MS/MS和基于特征的分子网络分析的结合导致了一种新的腺肽类似物的分离,higapeptin(1),和四种已知的肽,腺肽(2),腺肽B和C(3和4),和acremopeptin(5),从九州有明海的泥滩中分离出的真菌Acremoniumperspicinum(18F04103)的水稻培养物中,日本。通过NMR和MS/MS断裂分析确定1的结构。通过酸水解后的Marfey分析确定组成氨基酸的绝对构型。合成了C端残基,它的绝对配置是由Marfey的分析确定的。发现化合物1和2抑制线粒体能量代谢,类似于efrapeptinD(6),一种已知的线粒体ATP酶抑制剂。
    A combination of LC-MS/MS and feature-based molecular networking analyses led to the isolation of a new adenopeptin analog, higapeptin (1), and four known peptides, adenopeptin (2), adenopeptins B and C (3 and 4), and acremopeptin (5), from the rice culture of the fungus Acremonium persicinum (18F04103) isolated from a mud flat of the Ariake Sea in Kyushu, Japan. The structure of 1 was determined by NMR and MS/MS fragmentation analyses. The absolute configuration of the constituent amino acids was determined by Marfey\'s analysis after acid hydrolysis. The C-terminal residue was synthesized, and its absolute configuration was established by Marfey\'s analysis. Compounds 1 and 2 were found to inhibit mitochondrial energy metabolism, similar to efrapeptin D (6), a known mitochondrial ATPase inhibitor.
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