Microbial flora

微生物菌群
  • 文章类型: Journal Article
    本综述解释了唾液微生物群作为各种疾病的非侵入性诊断工具的潜力。传统的诊断方法依赖于血液,在收集和生物标志物特异性方面有局限性。我们讨论了正常菌群的概念以及口腔微生物群的破坏如何指示疾病。唾液,拥有多样化的微生物群落,有望成为口腔和非口腔疾病的诊断生物标志物来源。我们深入研究了微生物菌群失调在疾病发病机理中的作用,以及使用菌群失调等生物学指标进行诊断的前景,预测,和监测。本文还强调了唾液微生物群在促进疾病早期检测和及时干预中的意义。我们解决了以下研究问题和目标:唾液的微生物群可以作为早期检测和监测口腔和非口腔疾病的非侵入性诊断工具吗?我们将探索口腔中微生物的正常菌群,微生物菌群失调的影响,以及使用特定病原微生物作为生物标志物的潜力。此外,我们将通过分析总唾液或特定部位的牙齿生物膜的共生或生态失调的迹象,研究口腔和非口腔疾病之间的相关性。这项研究旨在为在医疗保健中广泛应用的非侵入性诊断方法的开发提供有价值的见解。
    Potential of salivary microbiota as a non-invasive diagnostic tool for various diseases are explained in the present review. Traditional diagnostic methods rely on blood, which has limitations in terms of collection and biomarker specificity. We discuss the concept of normal flora and how disruptions in oral microbiota can be indicative of diseases. Saliva, harboring a diverse microbial community, offers promise as a diagnostic biomarker source for oral and non-oral conditions. We delve into the role of microbial dysbiosis in disease pathogenesis and the prospects of using biological indicators like dysbiosis for diagnosis, prediction, and monitoring. This review also emphasizes the significance of saliva microbiota in advancing early disease detection and timely intervention. We addressed the following research question and objectives: Can the microbiota of saliva serve as a non-invasive diagnostic tool for the early detection and monitoring of both oral and non-oral diseases? To achieve this, we will explore the normal flora of microorganisms in the oral cavity, the impact of microbial dysbiosis, and the potential of using specific pathogenic microorganisms as biomarkers. Additionally, we will investigate the correlation between oral and non-oral diseases by analyzing total saliva or site-specific dental biofilms for signs of symbiosis or dysbiosis. This research seeks to contribute valuable insights into the development of a non-invasive diagnostic approach with broad applications in healthcare.
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  • 文章类型: Journal Article
    微生物生态系统经历空间和养分限制,导致同居物种之间合作与竞争的共同进化。为了增加他们的生存能力,细菌利用机器在密切接触时对抗敌对物种。因此,细菌VI型分泌系统(T6SS)纳米机械,通常由寄生虫表达,可以将蛋白质直接转运到真核细胞或原核细胞中,从而杀死同居的竞争对手。这里,我们首次证明了口腔共生体Aggregatibacters嗜睡杆菌具有T6SS,并且可以使用其T6SS消除其紧密相关的口腔病理性Aggregatibacter放线菌。这些发现使共生体对同居病原体的抗菌前景更加接近,同时在口腔中引入了活性T6SS。
    Microbial ecosystems experience spatial and nutrient restrictions leading to the coevolution of cooperation and competition among cohabiting species. To increase their fitness for survival, bacteria exploit machinery to antagonizing rival species upon close contact. As such, the bacterial type VI secretion system (T6SS) nanomachinery, typically expressed by pathobionts, can transport proteins directly into eukaryotic or prokaryotic cells, consequently killing cohabiting competitors. Here, we demonstrate for the first time that oral symbiont Aggregatibacter aphrophilus possesses a T6SS and can eliminate its close relative oral pathobiont Aggregatibacter actinomycetemcomitans using its T6SS. These findings bring nearer the anti-bacterial prospects of symbionts against cohabiting pathobionts while introducing the presence of an active T6SS in the oral cavity.
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  • 文章类型: Journal Article
    牙髓微生物菌群在牙周牙髓病变(PEL)的发展和持续中起着关键作用。了解PEL中微生物物种的组成和流行对于有效的治疗策略至关重要。
    从诊断为PEL的50颗牙齿收集微生物样本。使用无菌纸点从根管获得样品。提取脱氧核糖核酸(DNA),并对16S核糖体RNA(rRNA)基因进行聚合酶链反应(PCR)扩增,以鉴定细菌种类。使用统计学方法对获得的数据进行分析。
    微生物分析揭示了PEL中多种细菌种类。最普遍的物种是牙龈卟啉单胞菌(32.5%),Denticola密螺旋体(28.0%),和具核梭杆菌(22.5%)。还经常检测到变形链球菌(9.0%)和放线菌(8.0%)。此外,中间普氏菌(7.0%),放线菌聚集杆菌(3.5%),粪肠球菌(2.5%)的频率较低。
    带有PEL的牙齿中存在多种微生物菌群,这突显了这些病变的多微生物性质。牙周病原体的优势,如牙龈卟啉单胞菌,Denticola密螺旋体,和核梭杆菌提示牙周和牙髓感染之间有很强的关联。全面了解PEL中的微生物谱对于针对所涉及的特定病原体的定制治疗方法至关重要。
    UNASSIGNED: Endodontic microbial flora plays a pivotal role in the development and persistence of periodontal endodontic lesions (PELs). Understanding the composition and prevalence of microbial species in PELs is essential for effective treatment strategies.
    UNASSIGNED: Microbial samples were collected from 50 teeth diagnosed with PELs. Sterile paper points were used to obtain samples from the root canals. Deoxyribonucleic acid (DNA) was extracted and subjected to polymerase chain reaction (PCR) amplification of the 16S ribosomal RNA (rRNA) gene to identify bacterial species. The obtained data were analyzed using statistical methods.
    UNASSIGNED: The microbial analysis revealed a diverse range of bacterial species in PELs. The most prevalent species were Porphyromonas gingivalis (32.5%), Treponema denticola (28.0%), and Fusobacterium nucleatum (22.5%). Streptococcus mutans (9.0%) and Actinomyces naeslundii (8.0%) were also frequently detected. Additionally, Prevotella intermedia (7.0%), Aggregatibacter actinomycetemcomitans (3.5%), and Enterococcus faecalis (2.5%) were present in lower frequencies.
    UNASSIGNED: The presence of a diverse microbial flora in teeth with PELs underscores the polymicrobial nature of these lesions. The predominance of periodontal pathogens such as Porphyromonas gingivalis, Treponema denticola, and Fusobacterium nucleatum suggests a strong association between periodontal and endodontic infections. A comprehensive understanding of the microbial profile in PELs is crucial for tailored therapeutic approaches targeting the specific pathogens involved.
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  • 文章类型: Journal Article
    为提高褐煤厌氧发酵产甲烷效率,探索污泥利用的创新途径,使用涉及褐煤和污泥的共发酵技术将生物质转化为生物甲烷。引入挥发性悬浮固体作为污泥的天然富集物,并与褐煤混合进行发酵。通过生化甲烷潜力实验,分析了污泥与褐煤协同发酵生产生物甲烷的机理,发酵前后各种参数的测量,观察反应高峰期间细菌种群变化,碳迁移评估,和流变特性的评价。结果表明,在厌氧发酵过程中添加污泥提高了微生物降解褐煤的能力,并增强了生物甲烷的生产。值得注意的是,记录的最大甲烷产量为215.52毫升/克挥发性悬浮固体,在污泥与煤的比例为3:1的情况下实现,协同增长率为25.37%。此外,总悬浮固体的去除率,随着混合物中污泥百分比的增加,总化学需氧量呈上升趋势。发现产甲烷菌种群的相对丰度和活性随着污泥与褐煤的适当比例而增加。这一观察结果证实了碳在固-液-气相之间的迁移,促进增强的系统亲和力。此外,反应前后固液相参数的变化表明污泥的加入提高了系统的降解能力。研究结果对实现污泥和褐煤的资源化利用,同时为环境保护工作做出贡献具有重要意义。
    To improve the methanogenic efficiency of lignite anaerobic fermentation and explore innovative approaches to sludge utilization, a co-fermentation technique involving lignite and sludge was employed for converting biomass into biomethane. Volatile suspended solids were introduced as a native enrichment of the sludge and mixed with lignite for fermentation. The synergistic fermentation mechanism between sludge and lignite for biomethane production was analyzed through biochemical methane potential experiments, measurement of various parameters pre- and post-fermentation, observation of bacterial population changes during the peak of reaction, carbon migration assessment, and evaluation of rheological characteristics. The results showed that the addition of sludge in the anaerobic fermentation process improved the microorganisms\' ability to degrade lignite and bolstered biomethane production. Notably, the maximum methane production recorded was 215.52 mL/g-volatile suspended solids, achieved at a sludge to coal ratio of 3:1, with a synergistic growth rate of 25.37%. Furthermore, the removal rates of total suspended solids, and total chemical oxygen demand exhibited an upward trend with an increasing percentage of sludge in the mixture. The relative abundance and activity of the methanogens population were found to increase with an appropriate ratio of sludge to lignite. This observation confirmed the migration of carbon between the solid-liquid-gas phases, promoting enhanced system affinity. Additionally, the changes in solid-liquid phase parameters before and after the reaction indicated that the addition of sludge improved the system\'s degradation capacity. The results of the study hold significant implications in realizing the resource utilization of sludge and lignite while contributing to environmental protection endeavors.
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  • 文章类型: Journal Article
    大多数对非目标水生动物的丙草胺毒性研究都集中在肝毒性上。心脏毒性,胚胎发育和生长毒性,而关于百草醚肠道毒性的分子机制研究尚不清楚。在目前的研究中,中华绒螯蟹(Eriocheirsinensis)的肠组织被用来通过96小时的急性体内暴露于prometrine来揭示潜在的应激分子机制。结果表明,百甲灵激活了Nrf2-Keap1通路,上调了下游抗氧化基因的表达。Prometryn诱导与非特异性免疫和自噬相关基因的表达,并通过MAPK途径诱导细胞凋亡。有趣的是,上述基因的显著上调或下调主要发生在暴露后12h-24h。肠道菌群测序显示,百合霉素主要通过降低有益菌丰度来破坏肠道正常屏障功能,这进一步削弱了肠道对外源性毒素的抵抗力,并引起了炎症反应。相关分析发现,属水平的差异菌群与肠道应激相关基因具有潜在的关联。总之,我们的研究有助于了解除草剂对水生甲壳类动物的肠道应激背后的分子机制。
    Most toxicity studies of prometryn in non-target aquatic animals have focused on hepatotoxicity, cardiotoxicity, embryonic developmental and growth toxicity, while studies on the molecular mechanisms of intestinal toxicity of prometryn are still unknown. In the current study, the intestinal tissues of the Chinese mitten crab (Eriocheir sinensis) were used to uncover the underlying molecular mechanisms of stress by 96-h acute in vivo exposure to prometryn. The results showed that prometryn activated the Nrf2-Keap1 pathway and up-regulated the expression of downstream antioxidant genes. Prometryn induced the expression of genes associated with non-specific immunity and autophagy, and induced apoptosis through the MAPK pathway. Interestingly, the significant up-or down-regulation of the above genes mainly occurred at 12 h- 24 h after exposure. Intestinal flora sequencing revealed that prometryn disrupted the intestinal normal barrier function mainly by reducing beneficial bacteria abundance, which further weakened the intestinal resistance to exogenous toxicants and caused an inflammatory response. Correlation analyses found that differential flora at the genus level had potential associations with gut stress-related genes. In conclusion, our study contributes to understanding the molecular mechanisms behind the intestinal stress caused by herbicides on aquatic crustaceans.
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  • 文章类型: Journal Article
    背景可重复使用的静脉切开术止血带可能通过在多个患者的皮肤表面重复使用而被污染,医护人员的手,或各种表面。不遵守管理止血带的方案指南可能会导致微生物在患者之间的交叉传播。进行这项研究是为了确定可重复使用的静脉切开术止血带的微生物区系和抗菌敏感性模式。方法在医院的不同区域随机抽取止血带,并运送到微生物实验室进行隔离,identification,和使用标准微生物技术对微生物进行抗生素敏感性测试。结果50例止血带的细菌定植率为80%。止血带上最普遍的分离株是凝固酶阴性葡萄球菌(9,22.54%),其次是微球菌(6,15%),金黄色葡萄球菌(5,12.5%),白喉(5,12.5%),不动杆菌(4,10%)肠球菌(3,7.5%),假单胞菌(3,7.5%),芽孢杆菌(3,7.5%),和大肠杆菌(2,5%)。结论建议在资源贫乏的环境中定期监测和消毒可重复使用的止血带,以减少医疗保健感染和多药耐药(MDR)菌株的传播。
    Background Reusable phlebotomy tourniquets may become contaminated through repeated use on the skin surfaces of multiple patients, the hands of healthcare workers, or various surfaces. Noncompliance with the protocol guidelines for managing tourniquets can contribute to the cross-transmission of microorganisms among patients. This study was conducted to determine the microbial flora and antimicrobial sensitivity pattern of reusable phlebotomy tourniquets. Methodology Tourniquets were randomly sampled across the different areas of the hospital and were transported to the microbiology laboratory for isolation, identification, and antibiotic susceptibility testing of microorganisms using standard microbiological techniques. Results The overall bacterial colonization rate of the 50 tourniquets was 80%. The most prevalent isolate on tourniquets was Coagulase-negative Staphylococcus (9, 22.54%), followed by Micrococcus (6, 15%), Staphylococcus aureus (5, 12.5%), diphtheroid (5, 12.5%), Acinetobacter (4, 10%) Enterococcus (3, 7.5%), Pseudomonas (3, 7.5%), Bacillus (3, 7.5%), and Escherichia coli (2, 5%). Conclusions Regular surveillance and disinfection of reusable tourniquets in resource-poor settings are recommended to decrease healthcare infections and the transmission of multidrug-resistant (MDR) strains.
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  • 文章类型: Journal Article
    本研究旨在研究源自人脂肪干细胞(h-ASCs)的光生物调节(PBM)和条件培养基(CM)的作用,无论是单独还是组合,在I型糖尿病(TIDM)大鼠的缺血感染延迟愈合伤口模型(IIDHWM)的成熟期。
    这项研究涉及从捐赠的脂肪中提取h-ASC,评估他们的免疫表型标记,细胞培养,从培养的1×10^6h-ASCs中提取和浓缩CM。在24只雄性成年大鼠中诱导TIDM,分为四组:对照组,CM组,PBM组(80Hz,0.2J/cm2,890nm),和接受CM和PBM的大鼠。在第4、8和16天进行临床和实验室评价,在第16天使用CO2进行安乐死。使用来自每只大鼠的两个伤口样品进行张力计和体视学检查。
    在所有评估因素中,包括伤口闭合率,微生物,张力计,和立体参数,观察到类似的模式。CM+PBM的结果,PBM,与对照组相比,CM治疗在所有评估参数上均显着优于对照组(全部p=0.000)。PBM和CM+PBM处理均显示出比单独的CM更好的张力计和体视学结果(几乎所有,p=0.000),CM+PBM几乎在所有方面都优于单独的PBM(p=0.000)。微生物学,CM+PBM和PBM都表现出比单独的CM更少的菌落形成单位(CFU)(两者,p=0.000)。
    PBM,CM,和CM+PBM干预通过减轻炎症反应和减少CFU计数,显著增强了TIIDHWM大鼠伤口愈合过程的成熟期。此外,这些治疗促进了伤口床中新组织的形成并改善了伤口强度。值得注意的是,CM+PBM的综合效应超过了CM和PBM的个体效应。
    在线版本包含补充材料,可在10.1007/s40200-023-01285-3获得。
    UNASSIGNED: This study aimed to investigate the effects of photobiomodulation (PBM) and conditioned medium (CM) derived from human adipose-derived stem cells (h-ASCs), both individually and in combination, on the maturation stage of an ischemic infected delayed healing wound model (IIDHWM) in type I diabetic (TIDM) rats.
    UNASSIGNED: The study involved the extraction of h-ASCs from donated fat, assessment of their immunophenotypic markers, cell culture, and extraction and concentration of CM from cultured 1 × 10^6 h-ASCs. TIDM was induced in 24 male adult rats, divided into four groups: control, CM group, PBM group (80 Hz, 0.2 J/cm2, 890 nm), and rats receiving both CM and PBM. Clinical and laboratory evaluations were conducted on days 4, 8, and 16, and euthanasia was performed using CO2 on day 16. Tensiometrical and stereological examinations were carried out using two wound samples from each rat.
    UNASSIGNED: Across all evaluated factors, including wound closure ratio, microbiological, tensiometrical, and stereological parameters, similar patterns were observed. The outcomes of CM + PBM, PBM, and CM treatments were significantly superior in all evaluated parameters compared to the control group (p = 0.000 for all). Both PBM and CM + PBM treatments showed better tensiometrical and stereological results than CM alone (almost all, p = 0.000), and CM + PBM outperformed PBM alone in almost all aspects (p = 0.000). Microbiologically, both CM + PBM and PBM exhibited fewer colony-forming units (CFU) than CM alone (both, p = 0.000).
    UNASSIGNED: PBM, CM, and CM + PBM interventions substantially enhanced the maturation stage of the wound healing process in IIDHWM of TIDM rats by mitigating the inflammatory response and reducing CFU count. Moreover, these treatments promoted new tissue formation in the wound bed and improved wound strength. Notably, the combined effects of CM + PBM surpassed the individual effects of CM and PBM.
    UNASSIGNED: The online version contains supplementary material available at 10.1007/s40200-023-01285-3.
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  • 文章类型: Journal Article
    背景:我们旨在研究人脂肪干细胞条件培养基(h-ASC-COM)和光生物调节(PBM)对2型糖尿病大鼠(TIIDM)的缺血感染延迟愈合伤口模型(IIDHWM)成熟阶段的伴随和单独影响。
    结果:伤口闭合率(WCR)结果,拉伸微生物,和体视学评估遵循几乎相同的模式。虽然h-ASC-COM+PBM的结果,仅限PBM,所有评估方法的h-ASC-COM方案均明显优于第1组(所有,p<0.001),单独的PBM和h-ASC-COM+PBM治疗比仅h-ASC-COM获得更好的结果(范围从p=0.05到p<0.001)。在张力计和体视学检查方面,h-ASC-COM+PBM的结果比仅PBM的结果更好(全部,p<0.001)。
    结论:h-ASC-COM+PBM,PBM,h-ASC-COM通过减轻炎症反应,明显加速了TIIDM大鼠MRSA伤口愈合过程中的成熟期,和MRSA的微生物菌群;增加伤口强度,WCR,成纤维细胞的数量,和新血管。虽然h-ASC-COM+PBM和PBM比h-ASC-COM的效果更合适,h-ASC-COM+PBM结果优于单纯PBM。
    BACKGROUND: We aimed to examine the accompanying and solo impacts of conditioned medium of human adipose-derived stem cells (h-ASC-COM) and photobiomodulation (PBM) on the maturation stage of an ischemic infected delayed-healing wound model (IIDHWM) of rats with type 2 diabetes (TIIDM).
    RESULTS: Outcomes of the wound closure ratio (WCR) results, tensiometrical microbiological, and stereological assessment followed almost identical patterns. While the outcomes of h-ASC-COM + PBM, PBM only, and h-ASC-COM only regimes were significantly better for all evaluated methods than those of group 1(all, p < 0.001), PBM alone and h-ASC-COM + PBM therapy achieved superior results than h-ASC-COM only (ranged from p = 0.05 to p < 0.001). In terms of tensiometrical and stereological examinations, the results of h-ASC-COM + PBM experienced better results than the PBM only (all, p < 0.001).
    CONCLUSIONS: h-ASC-COM + PBM, PBM, and h-ASC-COM cures expressively accelerated the maturation stage in the wound healing process of IIDHWM with MRSA in TIIDM rats by diminishing the inflammatory reaction, and the microbial flora of MRSA; and increasing wound strength, WCR, number of fibroblasts, and new blood vessels. While the h-ASC-COM + PBM and PBM were more suitable than the effect of h-ASC-COM, the results of h-ASC-COM + PBM were superior to PBM only.
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  • 文章类型: Journal Article
    微生物区系在微生物强化技术中起着重要作用。这些试剂的污染物降解能力和可行数量对于保证其实际应用至关重要。在这项研究中,筛选出高效降解污染物的微生物菌群,对其培养基成分和培养条件进行了优化,并在沸石滴滤塔中验证了其效果。在最佳条件下培养24小时后,活菌计数达到4.76×109cfu/mL,氨氮(NH4+-N)的降解率,硝酸盐氮(NO3--N),总氮(TN),总磷(TP),化学需氧量(COD)增加到93.5%,100%,68.3%,32.6%,85%,分别。优化喂养策略后,活菌浓度达到5.80×109cfu/mL。在应用效果验证实验中,NH4+-N的降解率,TN,TP,实验组COD达到96.69%,75.18%,73.82%,90.83%,分别,与对照组的结果相比,显示出显着的改善。对照组主要成分为Dokdonella,Brevundimonas,Alishewanella,红杆菌属,假黄单胞菌,和Thauera,而实验组的人是Dokdonella,变形杆菌,红杆菌属,Dechlomonas,和硝基螺旋体。变形杆菌,Dechlomonas,和Nitrosra,这是实验组独有的,是用于脱氮除磷的常见细菌。这解释了两组之间污水处理能力的差异。本研究提供了一种替代的污水处理微生物菌群,具有合理的生产成本和较高的降解效率,TN,TP,和COD。
    Microbial flora plays an important role in microorganism-enhanced technology. The pollutant degradation ability and viable counts of these agents are crucial to guarantee their practical application. In this study, an efficient pollutant-degrading microbial flora was screened, its medium components and culture conditions were optimized, and its effect was verified in zeolite trickling filter towers. After a 24 h culture under the optimal conditions, the viable count reached 4.76 × 109 cfu/mL, with the degradation rates of ammonia nitrogen (NH4+-N), nitrate nitrogen (NO3--N), total nitrogen (TN), total phosphorus (TP), and chemical oxygen demand (COD) increased to 93.5%, 100%, 68.3%, 32.6%, and 85%, respectively. After optimizing the feeding strategy, the concentration of viable bacteria reached 5.80 × 109 cfu/mL. In the application effect verification experiment, the degradation rates of NH4+-N, TN, TP, and COD in the experimental group reached 96.69%, 75.18%, 73.82%, and 90.83%, respectively, showing a significant improvement compared to the results of the control group. The main components in the control group were Dokdonella, Brevundimonas, Alishewanella, Rhodobacter, Pseudoxanthomonas, and Thauera, whereas those in the experimental group were Dokdonella, Proteocatella, Rhodobacter, Dechlomonas, and Nitrospira. Proteocatella, Dechlomonas, and Nitrosra, which were unique to the experimental group, are common bacteria used for nitrogen and phosphorus removal. This explains the difference in the sewage treatment capacity between the two groups. This study provides an alternative sewage treatment microbial flora with a reasonable production cost and high degradation efficiency for NH4+-N, TN, TP, and COD.
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  • 文章类型: Journal Article
    食品中的有益微生物结构多样且复杂。这些有益微生物可以在食品发酵过程中产生不同的独特风味。这些发酵食品的独特风味主要是由不同的原辅材料产生的,发酵技术,以及发酵过程中优势微生物对风味物质的积累。微生物区系的演替和代谢积累显著影响发酵食品的独特风味。研究发酵过程中微生物菌群变化在风味物质生产中的作用,可以揭示微生物菌群演替与关键风味化合物形成之间的潜在联系。本文综述了食品发酵过程中微生物菌群结构的演变以及食品系统中产生风味的关键挥发性化合物及其潜在关系。Further,对食品工业生产具有一定的指导意义。
    The beneficial microorganisms in food are diverse and complex in structure. These beneficial microorganisms can produce different and unique flavors in the process of food fermentation. The unique flavor of these fermented foods is mainly produced by different raw and auxiliary materials, fermentation technology, and the accumulation of flavor substances by dominant microorganisms during fermentation. The succession and metabolic accumulation of microbial flora significantly impacts the distinctive flavor of fermented foods. The investigation of the role of microbial flora changes in the production of flavor substances during fermentation can reveal the potential connection between microbial flora succession and the formation of key flavor compounds. This paper reviewed the evolution of microbial flora structure as food fermented and the key volatile compounds that contribute to flavor in the food system and their potential relationship. Further, it was a certain guiding significance for food industrial production.
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