Medical Genetics

医学遗传学
  • 文章类型: Journal Article
    大型语言模型(LLM)正在医学环境中引起人们的兴趣。例如,LLM可以通过基于临床注释提供合理的鉴别诊断来连贯地响应医疗查询。然而,有很多问题需要探索,例如评估开源LLM和闭源LLM之间的差异,以及LLM对医疗和非医疗用户查询的性能。在这项研究中,我们评估了多个LLM,包括Llama-2聊天,维库纳,Medllama2,Bard/Gemini,克劳德,ChatGPT3.5和ChatGPT-4,以及非LLM方法(Google搜索和Phenomizer),涉及他们从类似教科书的临床医生问题中识别遗传条件的能力以及与63种遗传条件相关的相应外行人翻译。对于开源LLM,较大的模型比较小的LLM更准确:7b,13b,大于33b的参数模型获得的精度范围为21%-49%,41%-51%,54%-68%,分别。闭源LLM优于开源LLM,ChatGPT-4表现最好(89%-90%)。11个LLM和Google搜索中有3个在临床医生和外行人提示之间存在明显的性能差距。我们还评估了上下文提示和关键字删除如何影响开源LLM性能。模型提供了2种类型的上下文提示:列表类型提示,这提高了LLM性能,和定义类型提示,没有。我们进一步分析了从描述中删除稀有术语,这降低了7个评估的LLM中的5个的准确性。最后,我们观察到真实个体的描述表现要低得多;LLM以最大21%的准确率回答了这些问题。
    Large language models (LLMs) are generating interest in medical settings. For example, LLMs can respond coherently to medical queries by providing plausible differential diagnoses based on clinical notes. However, there are many questions to explore, such as evaluating differences between open- and closed-source LLMs as well as LLM performance on queries from both medical and non-medical users. In this study, we assessed multiple LLMs, including Llama-2-chat, Vicuna, Medllama2, Bard/Gemini, Claude, ChatGPT3.5, and ChatGPT-4, as well as non-LLM approaches (Google search and Phenomizer) regarding their ability to identify genetic conditions from textbook-like clinician questions and their corresponding layperson translations related to 63 genetic conditions. For open-source LLMs, larger models were more accurate than smaller LLMs: 7b, 13b, and larger than 33b parameter models obtained accuracy ranges from 21%-49%, 41%-51%, and 54%-68%, respectively. Closed-source LLMs outperformed open-source LLMs, with ChatGPT-4 performing best (89%-90%). Three of 11 LLMs and Google search had significant performance gaps between clinician and layperson prompts. We also evaluated how in-context prompting and keyword removal affected open-source LLM performance. Models were provided with 2 types of in-context prompts: list-type prompts, which improved LLM performance, and definition-type prompts, which did not. We further analyzed removal of rare terms from descriptions, which decreased accuracy for 5 of 7 evaluated LLMs. Finally, we observed much lower performance with real individuals\' descriptions; LLMs answered these questions with a maximum 21% accuracy.
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  • 文章类型: Journal Article
    该手稿回顾了巴西遗传学和基因组学人力资源教学和培训的最新技术。我们介绍了在医学本科和其他健康课程中教授遗传学的国家方案。我们讨论了通过医学住院医师对医学遗传学家的培训,并讨论了遗传学以外专业的医师的遗传学培训。我们通过latosensu和strictosensu研究生课程检查了专门研究遗传学的卫生专业人员的培训,并提出了目前在该国讨论的遗传咨询,遗传学和基因组学领域的多专业住院医师的建议。最后,我们强调了对初级卫生保健专业人员进行有关遗传学和基因组学方面的培训的重要性,以便在巴西统一卫生系统中有效建立针对患有遗传疾病的个人的护理线.因此,我们提供了一个全面的概述遗传学是如何(或不)纳入专业培训在一个全面的公共医疗系统,如巴西.
    This manuscript reviewed the state of the art about the teaching and training of human resources for genetics and genomics in Brazil. We presented the national scenario of teaching genetics in medical undergraduate and other health courses. We discussed the training of medical geneticists through medical residency and addressed the training in genetics of physicians from specialties other than genetics. We examined the training of health professionals specializing in genetics through lato sensu and stricto sensu postgraduate programs and presented the proposals for multi-professional residency in genetic counseling and genetics and genomics that are currently the subject of discussion in the country. Finally, we highlighted the importance of training primary health care professionals concerning genetics and genomics for the effective establishment of a line of care for individuals with genetic disorders in the Brazilian Unified Health System. Therefore, we provided a thorough overview of how genetics is (or is not) incorporated into professional training in a comprehensive public healthcare system such as the Brazilian.
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  • 文章类型: Case Reports
    患有严重炎症性疾病的儿童诊断和治疗具有挑战性,和疾病的病因往往仍然无法解释。在这里,我们将DIAPH1缺乏症作为致命的炎症性肠病儿童的意外遗传发现,该儿童也表现出复杂的神经和发育表型。DIAPH1的双等位基因突变首先在具有严重神经表型的患者中被描述,包括小头畸形,智力残疾,癫痫发作,和失明。最近的发现扩大了DIAPH1缺乏症的临床表型,包括严重的感染易感性,将这种单基因疾病置于先天性免疫错误的病因中。DIAPH1缺乏的免疫表型在很大程度上驱动异常淋巴细胞活化,特别是未能在T细胞中形成有效的免疫突触。我们介绍了一个儿童在DIAPH1中具有新的纯合缺失的情况,导致蛋白质的Lasso结构域过早截断。与其他DIAPH1缺陷病例不同,该患者没有癫痫发作或肺部感染.她的主要免疫相关临床症状是炎症和肠病,腹泻和未能茁壮成长。该患者没有显示T或B细胞淋巴细胞减少,但确实显着减少了初始CD4和CD8T细胞,扩增的CD4-CD8-T细胞,IgE升高。与其他DIAPH1缺乏症类似,该患者具有非血液学表型,包括小头畸形,发育迟缓,和视力受损。该患者的免疫失调症状没有成功控制,最终是致命的。该病例扩大了DIAPH1缺乏症的临床范围,并表明自身免疫性或炎性肠病可能是疾病最突出的免疫学表现。
    Children with severe inflammatory diseases are challenging to diagnose and treat, and the etiology of disease often remains unexplained. Here we present DIAPH1 deficiency as an unexpected genetic finding in a child with fatal inflammatory bowel disease who also displayed complex neurological and developmental phenotypes. Bi-allelic mutations of DIAPH1 were first described in patients with a severe neurological phenotype including microcephaly, intellectual disability, seizures, and blindness. Recent findings have expanded the clinical phenotype of DIAPH1 deficiency to include severe susceptibility to infections, placing this monogenic disease amongst the etiologies of inborn errors of immunity. Immune phenotypes in DIAPH1 deficiency are largely driven aberrant lymphocyte activation, particularly the failure to form an effective immune synapse in T cells. We present the case of a child with a novel homozygous deletion in DIAPH1, leading to a premature truncation in the Lasso domain of the protein. Unlike other cases of DIAPH1 deficiency, this patient did not have seizures or lung infections. Her major immune-related clinical symptoms were inflammation and enteropathy, diarrhea and failure to thrive. This patient did not show T or B cell lymphopenia but did have dramatically reduced naïve CD4+ and CD8+ T cells, expanded CD4-CD8- T cells, and elevated IgE. Similar to other cases of DIAPH1 deficiency, this patient had non-hematological phenotypes including microcephaly, developmental delay, and impaired vision. This patient\'s symptSoms of immune dysregulation were not successfully controlled and were ultimately fatal. This case expands the clinical spectrum of DIAPH1 deficiency and reveals that autoimmune or inflammatory enteropathy may be the most prominent immunological manifestation of disease.
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  • 文章类型: Journal Article
    背景:了解遗传学对医学生至关重要,特别是在沙特阿拉伯,由于近亲婚姻的高发,遗传疾病很普遍。这些知识对于早期检测至关重要,预防,和遗传疾病的管理,并将医学遗传学和基因组学纳入患者护理。这项研究旨在评估沙特阿拉伯医学生和实习生的遗传学知识现状,并确定遗传学知识差距。
    方法:在2023年8月至9月之间进行了一项横断面研究,涉及来自沙特阿拉伯所有地区的732名医学生。参与者完成了一份经过验证的问卷,评估他们对基础遗传学的了解,遗传遗传,基因检测,和临床遗传学。
    结果:超过60%的医学生和实习生报告说,他们认为自己在遗传学的所有领域只有很少的知识。结果显示,学生和实习生普遍缺乏医学遗传学理解,特别是关于遗传遗传和测试。对于遗传遗传,在65.2%的临床前发现了轻微的知识,60.1%的临床,53.2%的实习生,组间差异显著(p<0.001)。在基因检测中,75.4%的临床前,83.9%的临床,90.6%的实习生表现出轻微的知识,不同阶段存在显著差异(p=0.021)。这项研究还发现,讲座,遗传学实验室,和解决问题的会议是学习遗传学的首选资源。
    结论:当前的研究揭示了沙特阿拉伯医学生和实习生对医学遗传学的理解存在明显不足,特别是关于遗传遗传和测试。这与先前的研究强调医学生普遍缺乏遗传学知识是一致的。整合更全面的遗传学教育,尤其是在临床期间,可以提高学生应对遗传疾病的准备和信心。这些发现强调了课程开发的迫切需要,以使未来的医生具备管理遗传疾病的基本技能。
    BACKGROUND: Understanding genetics is crucial for medical students, particularly in Saudi Arabia, where genetic disorders are prevalent owing to high rates of consanguineous marriages. This knowledge is essential for the early detection, prevention, and management of genetic disorders, and for incorporating medical genetics and genomics into patient care. This study aimed to assess the current state of genetics knowledge among medical students and interns across Saudi Arabia and to identify knowledge gaps in genetics.
    METHODS: A cross-sectional study was conducted between August and September 2023 involving 732 medical students from all regions of Saudi Arabia. The participants completed a validated questionnaire assessing their knowledge of basic genetics, genetic inheritance, genetic testing, and clinical genetics.
    RESULTS: Over 60% of medical students and interns reported that they considered themselves to have only slight knowledge in all areas of genetics. The results revealed a general lack of medical genetic understanding among students and interns, particularly regarding genetic inheritance and testing. For genetic inheritance, slight knowledge was found in 65.2% of pre-clinical, 60.1% of clinical, and 53.2% of interns, with significant differences between groups (p < 0.001). In genetic testing, 75.4% of pre-clinical, 83.9% of clinical, and 90.6% of interns showed slight knowledge, with significant differences across stages (p = 0.021). This study also found that lectures, genetics laboratories, and problem-solving sessions were the preferred resources for learning genetics.
    CONCLUSIONS: The current study revealed a notable deficiency in the understanding of medical genetics among medical students and interns in Saudi Arabia, particularly regarding genetic inheritance and testing. This is consistent with previous research highlighting the widespread lack of genetics knowledge among medical students. Integrating more comprehensive genetics education, especially during the clinical years, could improve students\' preparedness and confidence in managing genetic disorders. These findings highlight the critical need for curriculum development to equip future physicians with the essential skills for managing genetic disorders.
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  • 文章类型: Journal Article
    背景:高度糖基化的蛋白聚糖的蛋白质主链中的丝氨酸残基通过四糖接头与糖胺聚糖结合。UXS1编码UDP-葡糖醛酸脱羧酶1,它催化UDP-木糖的合成,连接体中第一个构建块的供体。参与四糖接头形成的其他酶的缺陷会导致所谓的接头病,以身材矮小为特征,尺骨放射状滑膜,骨密度降低,先天性挛缩,位错,还有更多.
    方法:对一位轻度骨骼发育不良的父子进行全外显子组测序,以及父亲不受影响的父母。野生型和突变型UXS1在大肠杆菌中重组表达并纯化。通过LC-MS/MS评估酶活性。使用肝素Red测定和代谢组学研究体内作用。
    结果:儿子长骨短,正常骨phy,和微妙的干phy端变化,尤其是在他的腿。在儿子中检测到的可能致病性杂合变体NM_001253875.1(UXS1):c.557T>Ap。(Ile186Asn)在父亲中是从头。纯化的Ile186Asn-UXS1,与野生型相反,不能将UDP-葡萄糖醛酸转化为UDP-木糖。儿子和父亲的血浆糖胺聚糖水平均降低。
    结论:这是第一份将UXS1与人类短肢身材矮小联系起来的报告。
    BACKGROUND: Serine residues in the protein backbone of heavily glycosylated proteoglycans are bound to glycosaminoglycans through a tetrasaccharide linker. UXS1 encodes UDP-glucuronate decarboxylase 1, which catalyzes synthesis of UDP-xylose, the donor of the first building block in the linker. Defects in other enzymes involved in formation of the tetrasaccharide linker cause so-called linkeropathies, characterized by short stature, radio-ulnar synostosis, decreased bone density, congenital contractures, dislocations, and more.
    METHODS: Whole exome sequencing was performed in a father and son who presented with a mild skeletal dysplasia, as well as the father\'s unaffected parents. Wild-type and mutant UXS1 were recombinantly expressed in Escherichia coli and purified. Enzyme activity was evaluated by LC-MS/MS. In vivo effects were studied using HeparinRed assay and metabolomics.
    RESULTS: The son had short long bones, normal epiphysis, and subtle metaphyseal changes especially in his legs. The likely pathogenic heterozygous variant NM_001253875.1(UXS1):c.557T>A p.(Ile186Asn) detected in the son was de novo in the father. Purified Ile186Asn-UXS1, in contrast to the wild-type, was not able to convert UDP-glucuronic acid to UDP-xylose. Plasma glycosaminoglycan levels were decreased in both son and father.
    CONCLUSIONS: This is the first report linking UXS1 to short-limbed short stature in humans.
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  • 文章类型: English Abstract
    在2016年至2018年之间,对德国1970年至2000年之间的人类遗传学历史进行了33人的采访。29位受访者同意将访谈用于历史研究。目前正在用定性内容分析和扎根理论的方法对这些访谈进行分析。本文的重点在于对口述历史方法及其在人类遗传学中的应用进行严格审查。口述历史项目侧重于关于(1)传记数据和受访者的职业生涯的问题,(2)诊断和治疗技术的发展和应用,(3)人类遗传学机构的建立和发展;(4)有关该学科的社会辩论。
    Between 2016 and 2018, interviews with 33 persons were conducted about the history of human genetics in Germany between 1970 and the 2000s. 29 interviewees gave consent to have the interviews used for historical research. These interviews are currently being analysed with the methods of qualitative content analysis and grounded theory. The focus of this article lies on the critical examination of the method of oral history and its application to human genetics. The oral history project focuses on questions regarding (1) biographical data and careers of interviewees, (2) development and application of diagnostic and therapeutic techniques, (3) establishment and growth of institutions of human genetics and (4) social debates regarding the discipline.
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  • 文章类型: English Abstract
    历史学家一再指出,1945年之前德国的优生学与战后德国发展中的人类遗传学之间的个人和制度连续性。但是,德国人类遗传学家如何讨论这种外部感知,它是否在该学科的自我形象中发挥作用?在印刷资料和传记访谈的基础上,研究了1970年代至2010年代之间活跃在该领域的德国人类遗传学家的历史意识和历史责任承担。在当代证人的记忆中,甚至在20世纪80年代之前,历史意识就对他们的学科起到了作用,自1987年德国Humangenetik成立以来,显示历史责任的形式问题已经反复讨论。有人表示,例如,与公众讨论并重命名奖品。
    Historians have repeatedly pointed to personal and institutional continuities between eugenics in Germany before 1945 and the developing human genetics in post-war Germany. But how was this external perception discussed among German human geneticists and did it play a role in the discipline\'s self-image? On the basis of printed sources and biographical interviews, the historical consciousness and the assumption of historical responsibility among German human geneticists active in the field between the 1970s and the 2010s were investigated. In the memories of the contemporary witnesses, historical awareness played a role for their discipline even before the 1980s, and since the founding of the Deutsche Gesellschaft für Humangenetik in 1987, the question of the form of showing historical responsibility has been discussed repeatedly. It has been expressed, for example, in discussions with the public and renaming of prizes.
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  • 文章类型: Journal Article
    将孟德尔疾病基因离散分类为显性和隐性模型通常会过度简化其潜在的遗传结构。心肌病(CM)是具有复杂病因的遗传疾病,最近提出了越来越多的隐性关联。这里,我们全面分析了所有已发表的与CM表型相关的双等位基因变异的证据,以鉴定高置信度的隐性基因,并探索已建立的隐性和显性疾病基因中的单等位基因和双等位基因变异效应谱.我们对18个与CMs具有强隐性关联的基因进行了分类,主要以扩张表型为特征,早期疾病发作和严重结局。在英国生物银行中,这些基因中的一些与疾病结果和心脏特征具有单等位基因关联,包括LMOD2和ALPK3与扩张和肥厚CM,分别。我们的数据提供了对遗传性心脏病中优势和隐性的复杂光谱的见解,并展示了这些方法如何能够发现未探索的遗传关联。
    Discrete categorization of Mendelian disease genes into dominant and recessive models often oversimplifies their underlying genetic architecture. Cardiomyopathies (CMs) are genetic diseases with complex etiologies for which an increasing number of recessive associations have recently been proposed. Here, we comprehensively analyze all published evidence pertaining to biallelic variation associated with CM phenotypes to identify high-confidence recessive genes and explore the spectrum of monoallelic and biallelic variant effects in established recessive and dominant disease genes. We classify 18 genes with robust recessive association with CMs, largely characterized by dilated phenotypes, early disease onset and severe outcomes. Several of these genes have monoallelic association with disease outcomes and cardiac traits in the UK Biobank, including LMOD2 and ALPK3 with dilated and hypertrophic CM, respectively. Our data provide insights into the complex spectrum of dominance and recessiveness in genetic heart disease and demonstrate how such approaches enable the discovery of unexplored genetic associations.
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  • 文章类型: Letter
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  • 文章类型: Journal Article
    随着多媒体技术的飞速发展,以学生为中心的翻转课堂模式(FCM)和大规模开放在线课程(MOOC)在高等医学教育中越来越多地引入和实施。然而,很少报道离线面对面FCM和完全在线FCM的比较分析。在这项研究中,我们特别关注一组翻转教室,其中在上课前提供预先录制的视频。以智汇书平台为主要网络课程平台,我们的团队建立了MOOC,并评估了FCM在离线面对面课堂和在线电子实时医学遗传学教育课堂中的教学效果。问卷调查,采用纸质考试和口试的方式收集不同教学方法的教学效果数据。我们发现,离线FCM组的学生满意度和总体学生成绩明显高于完全在线教学组。尽管在线FCM允许学生在课后随时随地播放和复习,线下FCM教授的学生对知识的掌握程度明显更高,对理论知识有了更深入的理解,并且更擅长知识的综合应用。他们对遗传病临床诊断和治疗技能的培训效果显著,他们的科学研究能力也得到了显着提高。我们的研究讨论了在线课程的优势以及使用这些技术带来的问题,它提供了对基于互联网的医学教育时代的在线教学实践的见解。
    With the rapid development of multimedia technology, the student centered flipped classroom model (FCM) and massive open online courses (MOOCs) have been increasingly introduced and implemented in higher medical education. However, comparative analyses of the offline face-to-face FCM and completely online FCM have been rarely reported. In this study, we focused specifically on a set of flipped classrooms in which prerecorded videos were provided before class. Using the Zhihuishu platform as the major online course platform, our team built a MOOC and evaluated the teaching effectiveness of the FCM in both the offline face-to-face class and the online electronic live class for medical genetics education. Questionnaires, paper-based and oral exams were used to collect data on the teaching effects of the different teaching methods. We found that student satisfaction and overall student performance in the offline FCM group was significantly higher than that in the completely online teaching group. Although online FCM allowed students to play back and review anywhere and anytime after class, students taught in offline FCM had a significantly higher degree of knowledge mastery, had a deeper understanding of theoretical knowledge, and were better at knowledge comprehensive application. The effects of their training on genetic disease clinical diagnosis and treatment skills were significantly better, and their capacity for scientific research was also significantly improved. Our research discussed the advantages of the online courses and the problems brought about by using these technologies, and it provided insight into online teaching practices in the era of internet-based medical education.
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