Liver Regeneration

肝再生
  • 文章类型: Journal Article
    肝脏在人体内具有独特的再生能力。在正常情况下,肝细胞自我复制以维持肝功能。健康肝细胞的代偿复制对于急性肝损伤后的再生是足够的。在慢性肝损伤的晚期,大量肝细胞死亡,肝细胞复制被阻断。肝再生有更复杂的机制,如细胞类型或肝祖细胞介导的转分化。肝再生失调导致严重的慢性肝病。对肝脏再生机制有更全面的了解将有助于有效治疗方法的发展。这篇综述概述了与各种肝脏疾病中肝脏再生的不同方面相关的信号通路。此外,还介绍了再生过程中细胞相互作用的新知识。最后,本文探讨了新技术的潜在应用,比如纳米技术,干细胞移植和类器官,在损伤后的肝再生中,提供治疗肝病的新观点。
    The liver possesses a distinctive capacity for regeneration within the human body. Under normal circumstances, liver cells replicate themselves to maintain liver function. Compensatory replication of healthy hepatocytes is sufficient for the regeneration after acute liver injuries. In the late stage of chronic liver damage, a large number of hepatocytes die and hepatocyte replication is blocked. Liver regeneration has more complex mechanisms, such as the transdifferentiation between cell types or hepatic progenitor cells mediated. Dysregulation of liver regeneration causes severe chronic liver disease. Gaining a more comprehensive understanding of liver regeneration mechanisms would facilitate the advancement of efficient therapeutic approaches. This review provides an overview of the signalling pathways linked to different aspects of liver regeneration in various liver diseases. Moreover, new knowledge on cellular interactions during the regenerative process is also presented. Finally, this paper explores the potential applications of new technologies, such as nanotechnology, stem cell transplantation and organoids, in liver regeneration after injury, offering fresh perspectives on treating liver disease.
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  • 文章类型: Journal Article
    目的:肝切除术目前被认为是肝癌患者最有效的治疗方法。据我们所知,在接受半肝切除术的患者中,尚无研究调查gadoxetic酸增强磁共振成像(MRI)结果与肝再生之间的关联.我们旨在阐明接受半肝切除术的患者在gadoxetic酸增强MRI上肝实质的信号强度(SI)与肝再生程度之间的关系。
    方法:41例患者在半肝切除术前接受了gadoxetic酸增强MRI检查。我们计算了肝胆阶段的肝脏与勃起脊髓肌SI比率(LMR)和对比前图像。使用以下等式计算ΔLMR:ΔLMR=(肝胆相中的LMR-对比前图像中的LMR)/对比前图像中的LMR。使用CT容积法计算术前和术后的残余肝脏体积(LV)。我们使用以下公式计算切除率(RR)和肝再生指数(LRI):RR=切除的LV/总LV×100,LRI=(术后残余LV-术前残余LV)/术前残余LV×100。LRI之间的关系,成像,并对临床病理因素进行分析。
    结果:单变量分析显示RR和ΔLMR与LRI呈正相关(分别为ρ=0.4133,p=0.0072和ρ=0.7773,p<0.001)。脾脏体积与LRI呈负相关(ρ=-0.3138,p=0.0486)。逐步回归分析显示,ΔLMR和RR与LRI独立相关(β系数=44.8771,p=0.0198,β系数=1.9653,p<0.001)。
    结论:ΔLMR可作为半肝切除术患者肝再生的术前预测因子。
    OBJECTIVE: Liver resection is currently considered the most effective treatment for patients with liver cancer. To the best of our knowledge, no study has investigated the association between gadoxetic acid-enhanced magnetic resonance imaging (MRI) findings and liver regeneration in patients who underwent hemihepatectomy. We aimed to clarify the relationship between the signal intensity (SI) of the liver parenchyma on gadoxetic acid-enhanced MRI and the degree of liver regeneration in patients who underwent hemihepatectomy.
    METHODS: Forty-one patients who underwent gadoxetic acid-enhanced MRI before hemihepatectomy were enrolled. We calculated the liver-to-erector spinae muscle SI ratio (LMR) in the hepatobiliary phase and the precontrast images. ΔLMR was calculated using the following equation: ΔLMR = (LMR in the hepatobiliary phase-LMR in the precontrast image)/LMR in the precontrast image. The preoperative and postoperative remnant liver volumes (LVs) were calculated using CT volumetry. We calculated the resection rate (RR) and liver regeneration index (LRI) using the following formulas: RR = Resected LV/Total LV × 100 and LRI = (postoperative remnant LV-preoperative remnant LV)/preoperative remnant LV × 100. The relationships among LRI, imaging, and clinicopathological factors were analyzed.
    RESULTS: Univariate analysis showed RR and ΔLMR showed a positive correlation with LRI (ρ = 0.4133, p = 0.0072 and ρ = 0.7773, p < 0.001, respectively). Spleen volume showed a negative correlation with LRI (ρ = -0.3138, p = 0.0486). Stepwise multiple regression analysis showed ΔLMR and RR were independently correlated with LRI (β coefficient = 44.8771, p = 0.0198 and β coefficient = 1.9653, p < 0.001, respectively).
    CONCLUSIONS: ΔLMR may serve as a preoperative predictor of liver regeneration in patients undergoing hemihepatectomy.
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  • 文章类型: Journal Article
    肝细胞核因子4α(HNF4α)是肝分化的主要调节因子。最近的研究也揭示了HNF4α通过负调控促有丝分裂基因的表达在肝细胞增殖中的作用。包括cMyc.这里,我们旨在研究HNF4α-cMyc在肝部分切除术(PHX)后肝再生过程中的相互作用。
    野生型(WT),肝细胞特异性敲除HNF4α(HNF4α-KO),cMyc(cMyc-KO),对HNF4α-cMyc双敲除(DKO)小鼠进行PHX以诱导肝再生。0h时收集血液和肝组织样本,24h,48h,7D,和PHX后的14D用于进一步分析。
    WT,HNF4α-KO,cMyc-KO和DKO小鼠在PHX后14天恢复肝脏重量。cMyc的缺失不影响肝再生,这与WT小鼠相似。WT和cMyc-KO小鼠早在PHX后24小时就开始恢复肝脏重量,在PHX后48小时出现峰值增殖反应。HNF4α-KO和DKO在PHX后第7天显示肝脏重量增加的延迟反应。PHX后DKO小鼠的总体肝细胞增殖反应低于其他基因型。有趣的是,存活的HNF4α-KO和DKO小鼠在PHX后第14天显示HNF4αmRNA和蛋白水平的再表达。这伴随着Krt19和Epcam表达的显着增加,肝祖细胞标志物,在PHX后第14天的DKO小鼠中。
    这些数据表明,在没有HNF4α的情况下,cMyc有助于肝细胞驱动的增殖以补偿丢失的组织质量。此外,在没有HNF4α和cMyc的情况下,发生HPC驱动的增殖以支持肝再生。
    UNASSIGNED: Hepatocyte nuclear factor 4 alpha (HNF4α) is the master regulator of hepatic differentiation. Recent studies have also revealed the role of HNF4α in hepatocyte proliferation via negatively regulating the expression of proto-mitogenic genes, including cMyc. Here, we aimed to study the interaction between HNF4α-cMyc during liver regeneration after partial hepatectomy (PHX).
    UNASSIGNED: Wild-type (WT), hepatocyte-specific knockout of HNF4α (HNF4α-KO), cMyc (cMyc-KO), and HNF4α-cMyc double knockout (DKO) mice were subjected to PHX to induce liver regeneration. Blood and liver tissue samples were collected at 0h, 24h, 48h, 7D, and 14D after PHX for further analysis.
    UNASSIGNED: WT, HNF4α-KO, cMyc-KO and DKO mice regained liver weight by 14 days after PHX. The deletion of cMyc did not affect liver regeneration, which was similar to the WT mice. WT and cMyc-KO mice started regaining liver weight as early as 24 hours after PHX, with a peak proliferation response at 48 hours after PHX. HNF4α- KO and DKO showed a delayed response with liver weight increase by day 7 after PHX. The overall hepatocyte proliferation response by DKO mice following PHX was lower than that of other genotypes. Interestingly, the surviving HNF4α-KO and DKO mice showed re-expression of HNF4α at mRNA and protein levels on day 14 after PHX. This was accompanied by a significant increase in the expression of Krt19 and Epcam, hepatic progenitor cell markers, in the DKO mice on day 14 after PHX.
    UNASSIGNED: These data indicate that, in the absence of HNF4α, cMyc contributes to hepatocyte-driven proliferation to compensate for the lost tissue mass. Furthermore, in the absence of both HNF4α and cMyc, HPC-driven proliferation occurs to support liver regeneration.
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  • 文章类型: Journal Article
    肝脏的再生能力使其能够在受伤后自我修复。细胞外囊泡和颗粒(EVPs)在肝脏的间质空间是至关重要的信号转导,新陈代谢,和免疫调节。了解肝源性EVPs在再生中的作用和机制是重要的,尤其是部分肝切除术后,机制尚不清楚。
    在小鼠中建立了70%肝切除模型,和EVP分离并使用电子显微镜进行表征,纳米表征,和蛋白质印迹分析。结合代谢组和转录组分析显示,在再生过程中EVP中β-谷甾醇富集和Hedgehog信号通路的激活。利用qRT-PCR方法鉴定了β-谷甾醇在EVPs中对Hedgehog通路及其靶标的作用,蛋白质印迹分析。使用双荧光素酶测定法测定通过该途径对肉毒碱合成的调节。在小鼠中验证了β-谷甾醇饮食对肝再生的影响。
    70%肝切除术后,肝脏成功再生,无肝功能衰竭或死亡。手术后24小时,组织染色显示短暂性再生相关脂肪变性(TRAS),在48小时时Ki67阳性增加。EVP表现出球形脂质双层结构,粒径为70-130nm。证实了肝脏来源的EVP中的CD9、CD63和CD81。转录组学和代谢组学分析显示,补充EVP可显着促进肉碱合成和脂肪酸氧化。组织染色证实了用EVP补充加速的TRAS分辨率和增强的肝再生。质谱鉴定了EVPs中的β-谷甾醇,与Smo蛋白结合,激活Hedgehog通路.这导致Gli3的核转运,刺激Sett5转录并诱导肉碱合成,从而加速脂肪酸氧化。与对照组相比,β-谷甾醇摄入量增加的小鼠显示出更快的TRAS分辨率和肝脏再生。
    肝源性EVPs促进肝部分切除术后再生。来自EVPs的β-谷甾醇通过激活Hedgehog信号通路加速脂肪酸氧化并促进肝脏再生。
    UNASSIGNED: The liver\'s regenerative capacity allows it to repair itself after injury. Extracellular vesicles and particles (EVPs) in the liver\'s interstitial space are crucial for signal transduction, metabolism, and immune regulation. Understanding the role and mechanism of liver-derived EVPs in regeneration is significant, particularly after partial hepatectomy, where the mechanisms remain unclear.
    UNASSIGNED: A 70% hepatectomy model was established in mice, and EVPs were isolated and characterized using electron microscopy, nanocharacterization, and Western blot analysis. Combined metabolomic and transcriptomic analyses revealed β-sitosterol enrichment in EVPs and activation of the Hedgehog signaling pathway during regeneration. The role of β-sitosterol in EVPs on the Hedgehog pathway and its targets were identified using qRT-PCR, Western blot analysis. The regulation of carnitine synthesis by this pathway was determined using a dual luciferase assay. The effect of a β-sitosterol diet on liver regeneration was verified in mice.
    UNASSIGNED: After 70% hepatectomy, the liver successfully regenerated without liver failure or death. At 24 hours post-surgery, tissue staining showed transient regeneration-associated steatosis (TRAS), with increased Ki67 positivity at 48 hours. EVPs displayed a spherical lipid bilayer structure with particle sizes of 70-130 nm. CD9, CD63, and CD81 in liver-derived EVPs were confirmed. Transcriptomic and metabolomic analyses showed EVPs supplementation significantly promoted carnitine synthesis and fatty acid oxidation. Tissue staining confirmed accelerated TRAS resolution and enhanced liver regeneration with EVP supplementation. Mass spectrometry identified β-sitosterol in EVPs, which binds to Smo protein, activating the Hedgehog pathway. This led to the nuclear transport of Gli3, stimulating Setd5 transcription and inducing carnitine synthesis, thereby accelerating fatty acid oxidation. Mice with increased β-sitosterol intake showed faster TRAS resolution and liver regeneration compared to controls.
    UNASSIGNED: Liver-derived EVPs promote regeneration after partial hepatectomy. β-sitosterol from EVPs accelerates fatty acid oxidation and promotes liver regeneration by activating Hedgehog signaling pathway.
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  • 文章类型: Journal Article
    肝细胞类器官(HO)的肝功能优于胆管细胞衍生的类器官,但寿命较短。为了抵消这一点,我们将猪HO与脂肪间充质干细胞(A-MSCs)共培养,并进行转录组分析.结果表明,A-MSCs增强了胶原合成途径,这对于维持类器官的三维结构和细胞外基质合成至关重要。A-MSCs也增加了肝祖细胞标志物(KRT7,SPP1,LGR5+,andTERT).探索HOs作为肝脏疾病模型,我们将它们暴露于酒精中,以创建酒精性肝损伤(ALI)模型。HOs与A-MSCs的共培养抑制肝细胞凋亡并减少HOs的脂质积累。此外,不同的乙醇浓度(0-400mM)和单次与每日暴露于HO表明,每日暴露显着增加了PLIN2的水平,这是一种脂质储存标记,同时降低CYP2E1和增加CYP1A2水平,提示CYP1A2可能在短期暴露期间的酒精解毒中起关键作用。此外,每日酒精暴露导致单独培养的HOs中过多的脂质积累和核破碎。这些发现表明,HO在体内模拟肝再生,将它们作为研究肝脏疾病的有价值的模型,比如ALI。
    Hepatocyte organoids (HOs) have superior hepatic functions to cholangiocyte-derived organoids but suffer from shorter lifespans. To counteract this, we co-cultured pig HOs with adipose-derived mesenchymal stem cells (A-MSCs) and performed transcriptome analysis. The results revealed that A-MSCs enhanced the collagen synthesis pathways, which are crucial for maintaining the three-dimensional structure and extracellular matrix synthesis of the organoids. A-MSCs also increased the expression of liver progenitor cell markers (KRT7, SPP1, LGR5+, and TERT). To explore HOs as a liver disease model, we exposed them to alcohol to create an alcoholic liver injury (ALI) model. The co-culture of HOs with A-MSCs inhibited the apoptosis of hepatocytes and reduced lipid accumulation of HOs. Furthermore, varying ethanol concentrations (0-400 mM) and single-versus-daily exposure to HOs showed that daily exposure significantly increased the level of PLIN2, a lipid storage marker, while decreasing CYP2E1 and increasing CYP1A2 levels, suggesting that CYP1A2 may play a critical role in alcohol detoxification during short-term exposure. Moreover, daily alcohol exposure led to excessive lipid accumulation and nuclear fragmentation in HOs cultured alone. These findings indicate that HOs mimic in vivo liver regeneration, establishing them as a valuable model for studying liver diseases, such as ALI.
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  • 文章类型: Journal Article
    肝细胞核因子4α(HNF4α)和孕烷X受体(PXR)参与肝细胞再生。尚不清楚HNF4α是否通过调节PXR参与肝细胞再生。本研究旨在探讨HNF4a与PXR的调控关系,以及它是否影响肝细胞再生。构建小鼠PXR基因报告基因和HNF4α过表达质粒,并转染入小鼠肝癌细胞(Hepa1-6)。过表达HNF4α,检测PXR基因的报告荧光值,PXR基因,并进行蛋白表达分析,探讨HNF4α与PXR的调控关系。测量细胞凋亡和细胞周期数据以验证HNF4α是否通过PXR参与肝细胞再生。荧光素酶基因报告基因测定结果表明,当HNF4α过表达时,24h时PXR基因报告基因的荧光值高于对照。随着HNF4α表达的增加,PXR基因和蛋白质表达增加,表明HNF4α与PXR启动子结合并上调PXR表达。细胞凋亡和细胞周期分析结果表明,当HNF4α表达量增加时,PXR的表达增加,细胞凋亡率下降,增殖率增加。同时,当酮康唑抑制PXR基因表达的上升趋势时,增殖率下降。通过抑制HNF4α并创建部分肝切除术(PHx),我们证明了HNF4α可以上调PXR以促进体内肝脏再生。因此,显示HNF4α通过上调PXR改善肝细胞再生,为今后联合应用药物治疗肝损伤的研究提供参考。
    Hepatocyte nuclear factor 4 alpha (HNF4α) and the pregnane X receptor (PXR) are involved in hepatocyte regeneration. It is not clear whether HNF4α is involved in hepatocyte regeneration through the regulation of PXR. This study aims to explore the regulatory relationship between HNF4a and PXR, and whether it affects hepatocyte regeneration. A mouse PXR gene reporter and an HNF4α overexpression plasmid were constructed and transfected into mouse hepatoma cells (Hepa1-6). Overexpression of HNF4α, detection of the PXR gene reporter fluorescence value, PXR gene, and protein expression analysis were conducted to explore the regulatory relationship between HNF4α and PXR. Apoptosis and cell cycle data were measured to verify whether HNF4α is involved in hepatocyte regeneration through PXR. The luciferase gene reporter assay results indicated when HNF4α was overexpressed, the fluorescence value of the PXR gene reporter was higher than that in the control at 24 h. With increasing HNF4α expression, the PXR gene and protein expression increased, indicating that HNF4α binds to the PXR promoter and upregulates PXR expression. Apoptosis and cell cycle analysis results demonstrated that when the expression of HNF4α increased, the expression of PXR increased, the apoptosis rate decreased, and the proliferation rate increased. Meanwhile, when the upward trend of PXR gene expression was inhibited by ketoconazole, the proliferation rate decreased. By inhibiting HNF4α and creating a partial hepatectomy (PHx), we demonstrated that HNF4α can upregulate PXR to promote liver regeneration in vivo. Therefore, HNF4α is shown to improve hepatocyte regeneration by upregulating PXR, which provides a reference for future research on the combined application of drugs for the treatment of liver injury.
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  • 文章类型: Journal Article
    背景:胎盘衍生核蛋白(PDN)通常与血管生成过程有关,并且不会影响健康的脉管系统。临床上估计PDN用于治疗癌症病例和严重肝损伤。因此,PDNs靶向肝纤维化的病理生理效应值得关注.
    目的:为了评估分子,组织病理学,PDN对二乙基亚硝胺(DEN)诱导的小鼠肝纤维化肝再生的化学影响。
    方法:正常未经治疗的参照组10只小鼠和两组使用推荐的每周剂量的二乙基亚硝胺的诱导肝硬化,共11个剂量,最初是20毫克/千克体重,然后在第三周30毫克/千克,在过去的八周里,服用了50毫克/千克,其中一种联合治疗与总剂量25mg/kg的提取PDNs注射一致,与仅PDN治疗组相比。在每组的DEN初始剂量22周后进行尸检。α平滑肌肌动蛋白的分子表征,分析肝脏的TGFβ和NF-κB生物标志物,然后分析肝功能,最后使用H&E染色和天狼星红染色观察肝病理学变化。
    结果:肝酶,在PDNs-DEN治疗的模型中,组织中的总胆红素和总蛋白被控制在正常组的方向,与DEN治疗的模型相比,纤维化减少了50%.在DEN整个组中纤维化的细胞排列被分化,对小鼠的存活具有高度显著的影响。肝脏匀浆中生化标志物水平升高,组织结构的丧失,在诱导组中观察到增殖和α平滑肌肌动蛋白的下调,TGFβ和NF-κB。
    结论:这一发现证明了使用DEN与PDN联合治疗肝组织诱导的纤维化的改善。该策略是在关于肝再生的短时间治疗中产生具有较低纤维化发生率的动物模型。
    BACKGROUND: Placental Derived Nucleoproteins (PDNs) is commonly associated with the process of angiogenesis, and doesn\'t affect the healthy vasculature. PDNs are clinically estimated for the treatment of cancer cases and severe hepatic injuries. Thus, the pathophysiological effects of PDNs targeting liver fibrosis is a concern.
    OBJECTIVE: To assess the molecular, histopathological, and chemical impact of PDNs on liver regeneration in Diethylnitrosamine (DEN)-induced mice liver fibrosis.
    METHODS: Normal untreated reference group of ten mice and two groups of induced liver cirrhosis using the recommended weekly dose of Diethylnitrosamine in total of eleven doses, initially 20 mg/kg body weight, and then 30 mg/kg in the third week, followed by 50 mg/kg for the last eight weeks, one of them combined treatment aligned with injection with total dose of extracted PDNs 25 mg/kg, in comparison to PDNs only treated group. An autopsy was performed after 22 weeks of the initial dose of DEN in each group. Molecular characterization of Alpha smooth muscle actin, TGFβ and NF-κB biomarkers for liver then liver function panel were analyzed and finally hepatopathological changes were observed using H&E stain and Sirius red stain.
    RESULTS: Liver enzymes, total bilirubin and total proteins in tissue in PDNs-DEN treated models were controlled in the direction of normal group and 50 % reduction of fibrosis in comparing to DEN-treated models. The cellular arrangement of fibrosis in the DEN entire groups were differentiated with high significant impact on the survival of mice. Increased levels of the biochemical markers in liver homogenate, loss of tissue architecture, and proliferation were observed in induced groups and down regulation of alpha smooth muscle actin, TGFβ and NF-κB.
    CONCLUSIONS: This finding demonstrates an improvement of Liver tissue induced fibrosis using DEN combined with PDNs. This strategy is to generate an animal model with a lower occurrence of fibrosis in a short time treatment regarding liver regeneration.
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  • 文章类型: Journal Article
    我们先前的临床代谢组学研究表明,能量代谢障碍是酒精性肝病(ALD)发展的潜在发病机制。补充烟酰胺(NAM),烟酰胺腺嘌呤二核苷酸(NAD+)的前体,可以恢复ALD的能量代谢稳态,因此可以作为治疗ALD的潜在治疗剂。在这个床边到长凳的研究中,NAM对ALD的保护作用通过使用NIAAA小鼠模型(慢性加暴饮暴食乙醇),并通过部分肝切除小鼠模型评估NAM的肝再生促进能力。我们的结果表明,NAM补充剂不仅可以保护肝脏免受酒精引起的损伤,而且可以改善酒精引起的线粒体结构和功能变化。但也通过增加肝脏NAD+含量促进部分肝切除术后小鼠的肝脏再生。这些发现表明,不结盟运动,维生素B3的水溶性形式,可以通过缓解酒精引起的能量代谢障碍来促进肝脏再生和改善肝功能。
    Our previous clinical metabolomics study illustrated that energy metabolism disorder is an underlying pathogenesis mechanism for the development of alcoholic liver disease (ALD). Supplementation of nicotinamide (NAM), the precursor of nicotinamide adenine dinucleotide (NAD+), may restore the energy metabolism homeostasis of ALD and thus serves as potential therapeutics to treat ALD. In this bedside-to-bench study, the protective effect of NAM against ALD was investigated by using the NIAAA mice model (chronic-plus-binge ethanol), and the liver regeneration boosting capability of NAM was evaluated by the partial hepatectomy mice model. Our results showed that NAM supplements not only protected the liver from alcohol-induced injury and improved alcohol-induced mitochondrial structure and function change, but also boosted liver regeneration in postpartial hepatectomy mice by increasing liver NAD+ content. These findings suggested that NAM, a water-soluble form of vitamin B3, can promote liver regeneration and improves liver function by alleviating alcohol-induced energy metabolism disorder.
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  • 文章类型: Journal Article
    在不同肝脏背景的患者中,准确评估部分肝切除术(PH)后未来的肝脏残余生长是一个紧迫的临床问题。氨基酸(AA)代谢在肝脏再生中起着至关重要的作用。在这项研究中,我们将代谢组学和机器学习(ML)结合起来,开发了一种针对多种肝脏背景的广义未来肝脏残留评估模型.在健康小鼠和患有非酒精性脂肪性肝炎或肝纤维化的小鼠中,在70%PH后0、6、24、48、72和168小时计算肝脏指数。使用UPLC-MS/MS测量39个氨基酸(AAs)的血清水平。数据集以2:1的比例随机分为训练集和测试集,使用正交偏最小二乘回归(OPLS)和R中的最小偏变量选择(MUVR)来选择AA的代谢物特征。为了评估肝脏残余生长,建立了九个ML模型,并使用决定系数(R2)进行评估,平均绝对误差(MAE),和均方根误差(RMSE)。通过与理想解决方案(TOPSIS)相似的顺序偏好后帕累托技术用于对ML算法进行排名,并利用堆叠技术在上级算法之间建立共识。与OPLS相比,由MUVR识别的签名AAs集(Thr,Arg,EtN,Phe,Asa,3MHs,阿布,Asp,Tyr,Leu,Ser,和baib)更简洁。帕累托TOPSIS后排名表明,与MUVR组合的大多数ML算法优于OPLS算法。建立的SVM-KNN一致性模型表现最好,测试集的R2为0.79,MAE为0.0029,RMSE为0.0035。这项研究确定了12种AA的代谢物特征,并构建了SVM-KNN共识模型,以评估具有不同肝脏背景的小鼠PH后未来的肝脏残留生长。我们的临床前研究有望建立肝脏再生的替代和通用评估方法。
    Accurate assessment of future liver remnant growth after partial hepatectomy (PH) in patients with different liver backgrounds is a pressing clinical issue. Amino acid (AA) metabolism plays a crucial role in liver regeneration. In this study, we combined metabolomics and machine learning (ML) to develop a generalized future liver remnant assessment model for multiple liver backgrounds. The liver index was calculated at 0, 6, 24, 48, 72 and 168 h after 70 % PH in healthy mice and mice with nonalcoholic steatohepatitis or liver fibrosis. The serum levels of 39 amino acids (AAs) were measured using UPLC-MS/MS. The dataset was randomly divided into training and testing sets at a 2:1 ratio, and orthogonal partial least squares regression (OPLS) and minimally biased variable selection in R (MUVR) were used to select a metabolite signature of AAs. To assess liver remnant growth, nine ML models were built, and evaluated using the coefficient of determination (R2), mean absolute error (MAE), and root mean square error (RMSE). The post-Pareto technique for order preference by similarity to the ideal solution (TOPSIS) was employed for ranking the ML algorithms, and a stacking technique was utilized to establish consensus among the superior algorithms. Compared with those of OPLS, the signature AAs set identified by MUVR (Thr, Arg, EtN, Phe, Asa, 3MHis, Abu, Asp, Tyr, Leu, Ser, and bAib) are more concise. Post-Pareto TOPSIS ranking demonstrated that the majority of ML algorithm in combinations with MUVR outperformed those with OPLS. The established SVM-KNN consensus model performed best, with an R2 of 0.79, an MAE of 0.0029, and an RMSE of 0.0035 for the testing set. This study identified a metabolite signature of 12 AAs and constructed an SVM-KNN consensus model to assess future liver remnant growth after PH in mice with different liver backgrounds. Our preclinical study is anticipated to establish an alternative and generalized assessment method for liver regeneration.
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  • 文章类型: Journal Article
    肝脏在其巨大的再生和自我修复能力方面被认为是独一无二的。与其他再生器官(即,皮肤,骨骼肌,和肠),成人肝脏是否含有明确的干细胞仍存在争议。为了补偿肝损伤后肝细胞的大量损失,肝脏处理精确控制的转录重程序,可以触发细胞增殖和细胞命运转换。表观遗传事件被认为在肝脏再生过程中调节染色质结构的组织和基因转录。在这次审查中,我们将总结表观遗传修饰剂对染色质的改变如何转化为细胞命运转变,以恢复肝脏再生过程中的肝脏稳态。
    The liver is considered unique in its enormous capacity for regeneration and self-repair. In contrast to other regenerative organs (i.e., skin, skeletal muscle, and intestine), whether the adult liver contains a defined department of stem cells is still controversial. In order to compensate for the massive loss of hepatocytes following liver injury, the liver processes a precisely controlled transcriptional reprogram that can trigger cell proliferation and cell-fate switch. Epigenetic events are thought to regulate the organization of chromatin architecture and gene transcription during the liver regenerative process. In this review, we will summarize how changes to the chromatin by epigenetic modifiers are translated into cell fate transitions to restore liver homeostasis during liver regeneration.
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