Lauraceae

樟科
  • 文章类型: Journal Article
    作为一种具有多功能经济应用的直立树,Machiluspauhoi是月桂科现代林业的绝佳选择。其生长特性对其分子育种和改良具有重要意义。然而,目前尚缺乏WUSCHEL相关同源异型盒(WOX)和生长素反应因子(ARF)基因家族的信息,被报道为植物生长以及生长素信号传导中的特异性转录因子。这里,从M.pauhoi的基因组中鉴定出总共16个MpWOX和21个MpARF基因。虽然WOX的成员在樟科保守,由于区域重复,MpWOX和MpARF基因在12条染色体上分布不均。这些基因提供了45和142个miRNA编辑位点,分别,反映了潜在的转录后抑制。总的来说,MpWOX4,MpWOX13a,MpWOX13b,MpARF6b,MpARF6c,MpARF19a在血管形成层中高度共表达,形成WOX-ARF复合物的工作模式。MpWOX在这种生长素信号连接中包含典型的AuxRR核心和TGA元件顺式作用调节元件。此外,在IAA和NPA治疗下,MpARF2a和MpWOX1a对IAA反应高度敏感,治疗6小时后显示显著变化。NPA处理对MpWOX1a有明显的抑制作用。通过所有这些坚实的分析,我们的发现为Machiluspauhoi的生长机制分析和进一步的分子设计育种提供了遗传基础。
    As an upright tree with multifunctional economic application, Machilus pauhoi is an excellent choice in modern forestry from Lauraceae. The growth characteristics is of great significance for its molecular breeding and improvement. However, there still lack the information of WUSCHEL-related homeobox (WOX) and Auxin response factor (ARF) gene family, which were reported as specific transcription factors in plant growth as well as auxin signaling. Here, a total of sixteen MpWOX and twenty-one MpARF genes were identified from the genome of M. pauhoi. Though member of WOX conserved in the Lauraceae, MpWOX and MpARF genes were unevenly distributed on 12 chromosomes as a result of region duplication. These genes presented 45 and 142 miRNA editing sites, respectively, reflecting a potential post-transcriptional restrain. Overall, MpWOX4, MpWOX13a, MpWOX13b, MpARF6b, MpARF6c, and MpARF19a were highly co-expressed in the vascular cambium, forming a working mode as WOX-ARF complex. MpWOXs contains typical AuxRR-core and TGA-element cis-acting regulatory elements in this auxin signaling linkage. In addition, under IAA and NPA treatments, MpARF2a and MpWOX1a was highly sensitive to IAA response, showing significant changes after 6 hours of treatment. And MpWOX1a was significantly inhibited by NPA treatment. Through all these solid analysis, our findings provide a genetic foundation to growth mechanism analysis and further molecular designing breeding in Machilus pauhoi.
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  • 文章类型: Journal Article
    被忽视的热带病是一个重要的问题,因为它们包括由热带地区流行的病原体引起的各种感染。这些疾病的有限且通常是高毒性的治疗选择需要探索新的治疗候选物。在本研究中,经过几个色谱步骤从PerseafulvaL.E.Koop(Lauraceae)中分离出木酚素甲基胡椒糖醇,并使用体外和计算机方法评估了其杀利什曼和杀锥虫活性。甲基哌啶醇的化学结构由NMR和MS光谱数据分析确定。在体外确定了甲基哌啶醇的抗原生动物活性,并表明了对锥虫锥虫形式的效力(EC50为4.5±1.1mM)和婴儿利什曼原虫的阿马丝虫形式(EC50为4.1±0.5mM),没有哺乳动物对NCTC细胞的细胞毒性(CC50>200mM)。分子对接研究使用6个克氏虫和4个利什曼原虫进行。结果表明,对于Cruzi中的次黄嘌呤磷酸核糖转移酶和fatum的piteridine还原酶1的分子靶标,甲基哌啶醇获得了比晶体学配体更好的结果。因此,木脂素甲基哌啶醇,从P.fulva分离具有开发用于治疗被忽视的热带病的新原型的潜力,尤其是利什曼病.
    Neglected Tropical Diseases are a significant concern as they encompass various infections caused by pathogens prevalent in tropical regions. The limited and often highly toxic treatment options for these diseases necessitate the exploration of new therapeutic candidates. In the present study, the lignan methylpiperitol was isolated after several chromatographic steps from Persea fulva L. E. Koop (Lauraceae) and its leishmanicidal and trypanocidal activities were evaluated using in vitro and in silico approaches. The chemical structure of methylpiperitol was defined by NMR and MS spectral data analysis. The antiprotozoal activity of methylpiperitol was determined in vitro and indicated potency against trypomastigote forms of Trypanosoma cruzi (EC50 of 4.5±1.1 mM) and amastigote forms of Leishmania infantum (EC50 of 4.1±0.5 mM), with no mammalian cytotoxicity against NCTC cells (CC50>200 mM). Molecular docking studies were conducted using six T. cruzi and four Leishmania. The results indicate that for the molecular target hypoxanthine phosphoribosyl transferase in T. cruzi and piteridine reductase 1 of L. infatum, the methylpiperitol obtained better results than the crystallographic ligand. Therefore, the lignan methylpiperitol, isolated from P. fulva holds potential for the development of new prototypes for the treatment of Neglected Tropical Diseases, especially leishmaniasis.
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  • 文章类型: Journal Article
    杂交和渗入是复杂的进化机制,可以增加物种多样性并导致物种形成,但也可能导致物种灭绝。在这项研究中,我们测试了稀有和厄瓜多尔特有的O.loxensisvanderWerff和广泛的O.infrafoveolatavanderWerff(Lauraceae)之间杂交的存在和遗传后果。表型,有些树很难辨认,我们预计有些实际上可能是神秘的混血儿。因此,我们开发了核微卫星来评估杂种的存在,以及异源和同胞种群的遗传多样性和种群结构的模式。结果显示了高水平的遗传多样性,即使是在罕见的O.loxensis,同胞通常明显高于异族。将个体划分为不同遗传类别的贝叶斯分配揭示了一个复杂的情况,在所有同胞种群中都发生了不同的杂种世代,而且是异形的。一些回交杂种的缺乏表明不对称基因流的存在,有些混血儿可能比其他混血儿更合身。当前和过去种间基因流的存在也解释了这些物种中物种边界的模糊,并且可能与在Ocotea中发现的高物种比率有关。
    Hybridization and introgression are complex evolutionary mechanisms that can increase species diversity and lead to speciation, but may also lead to species extinction. In this study, we tested the presence and genetic consequences of hybridization between the rare and Ecuadorian endemic O. loxensis van der Werff and the widespread O. infrafoveolata van der Werff (Lauraceae). Phenotypically, some trees are difficult to identify, and we expect that some might in fact be cryptic hybrids. Thus, we developed nuclear microsatellites to assess the existence of hybrids, as well as the patterns of genetic diversity and population structure in allopatric and sympatric populations. The results revealed high levels of genetic diversity, even in the rare O. loxensis, being usually significantly higher in sympatric than in allopatric populations. The Bayesian assignment of individuals into different genetic classes revealed a complex scenario with different hybrid generations occurring in all sympatric populations, but also in allopatric ones. The absence of some backcrossed hybrids suggests the existence of asymmetric gene flow, and that some hybrids might be more fitted than others might. The existence of current and past interspecific gene flow also explains the blurring of species boundaries in these species and could be linked to the high rates of species found in Ocotea.
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  • 文章类型: Journal Article
    Sassafrasrandaiense(Hayata)Rehder的完整叶绿体基因组序列,1920年,樟科的亚热带树,已确定。为了更好地理解S.randaiense和S.tzumu之间的差异,对兰代安沙门氏菌完整的叶绿体基因组进行了测序和分析。完整的叶绿体基因组长度为151,781bp,由一对20,114bp的反向重复(IR)区域组成,一个92,740bp的大型单拷贝(LSC)区域,和一个18,813bp的小的单拷贝(SSC)区域。完整叶绿体基因组的总GC含量为39.2%。Further,使用31个完整的质体序列进行最大似然系统发育分析,支持S.randaiense和S.tzumu嵌套在Cinnamomum的成员中,这表明Sassafras属于Cinnamomum.
    The complete chloroplast genome sequence of Sassafras randaiense (Hayata) Rehder, 1920, a subtropical tree in the family Lauraceae, was determined. For a better understanding of the differences between S. randaiense and S. tzumu, the complete chloroplast genome of S. randaiense was sequenced and analyzed. The complete chloroplast genome is 151,781 bp in length, consisting of a pair of inverted repeat (IR) regions of 20,114 bp, one large single-copy (LSC) region of 92,740 bp, and one small single-copy (SSC) region of 18,813 bp. The overall GC content of the complete chloroplast genome is 39.2%. Further, maximum-likelihood phylogenetic analysis was conducted using 31 complete plastome sequences, which support that S. randaiense and S. tzumu are nested among the members of Cinnamomum, suggesting that Sassafras belongs to Cinnamomum.
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  • 文章类型: Journal Article
    Litseacubeba(Lour.)Pers。(月桂科)是一种生产精油的有价值的工业作物。从库贝巴(LCEO)中提取的精油具有广谱抗菌活性和高抗氧化性能,在食品工业中增加使用量的巨大潜力。这篇文献综述总结了提取技术,含量和化学成分,以及LCEO的抗氧化和抗菌活性,专注于它在食品工业中的使用,这是最近大量研究的领域。LCEO的化学成分,受到各种因素的影响,在确定其生物活性和在食品中的使用中起着关键作用。LCEO对各种食源性病原体的有效抗菌活性使其有可能用于食品包装和保存以延长保质期。未来的研究挑战包括阐明LCEO的各个化学成分在抑制特定食源性微生物中的作用和机制;品种开发以生产出具有所需化学成分的精油的种质;以及可用于食品工业的商业产品的开发。
    Litsea cubeba (Lour.) Pers. (Lauraceae) is a valuable industrial crop that produces essential oil. The essential oil extracted from L. cubeba (LCEO) has broad-spectrum antimicrobial activity and high antioxidant properties, with great potential for increased usage in the food industry. This literature review summarizes the extraction techniques, content and chemical composition, and antioxidant and antimicrobial activities of LCEO, with a focus on its usage in the food industry, which is an area of substantial recent research. The chemical composition of LCEO, which is affected by various factors, plays a key role in determining its bioactivity and usage in food. The potent antimicrobial activity of LCEO against various foodborne pathogens gives it potential for use in food packaging and preservation to extend shelf life. Future research challenges include the elucidation of the role and mechanism of individual chemical components of LCEO in inhibiting specific foodborne microorganisms; cultivar development to produce germplasm that yields essential oils of the desired chemical composition; and the development of commercial products that can be used in the food industry.
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  • 文章类型: Journal Article
    为了应对生物和非生物胁迫,WRKY基因家族在植物生长发育中起着至关重要的作用。本研究集中于Phoebebournei,涉及WRKY基因家族成员的全基因组鉴定,阐明它们的分子进化特征,以及在不同非生物胁迫条件下它们的表达谱的全面作图。共鉴定出60个WRKY基因家族成员,它们的系统发育分类揭示了三个不同的群体。保守的基序分析强调了基序1和基序2在大多数PbWRKY蛋白中的显著保守性,同一类蛋白质共享类似的基因结构。此外,对顺式作用元件和蛋白质相互作用网络的研究揭示了几个基因与P.bournei的非生物胁迫反应有关。转录组数据用于分析WRKY家族成员在干旱和淹水条件下的表达模式。随后通过定量实时PCR(RT-qPCR)实验进行验证。值得注意的是,PbWRKY55在干旱胁迫下表现出显着的表达调节;PbWRKY36对淹水胁迫反应显着;在干旱和淹水胁迫下,PbWRKY18,PbWRKY38和PbWRKY57表现出表达变化。这项研究揭示了PbWRKY候选基因,这些基因可能在增强P.bournei的非生物胁迫恢复力中起关键作用。这些发现提供了宝贵的见解和知识,可以指导旨在理解和解决该物种非生物胁迫影响的进一步研究。
    In response to biotic and abiotic stresses, the WRKY gene family plays a crucial role in plant growth and development. This study focused on Phoebe bournei and involved genome-wide identification of WRKY gene family members, clarification of their molecular evolutionary characteristics, and comprehensive mapping of their expression profiles under diverse abiotic stress conditions. A total of 60 WRKY gene family members were identified, and their phylogenetic classification revealed three distinct groups. A conserved motif analysis underscored the significant conservation of motif 1 and motif 2 among the majority of PbWRKY proteins, with proteins within the same class sharing analogous gene structures. Furthermore, an examination of cis-acting elements and protein interaction networks revealed several genes implicated in abiotic stress responses in P. bournei. Transcriptomic data were utilized to analyze the expression patterns of WRKY family members under drought and waterlogged conditions, with subsequent validation by quantitative real-time PCR (RT-qPCR) experiments. Notably, PbWRKY55 exhibited significant expression modulation under drought stress; PbWRKY36 responded prominently to waterlogging stress; and PbWRKY18, PbWRKY38, and PbWRKY57 demonstrated altered expression under both drought and waterlogging stresses. This study revealed the PbWRKY candidate genes that potentially play a pivotal role in enhancing abiotic stress resilience in P. bournei. The findings have provided valuable insights and knowledge that can guide further research aimed at understanding and addressing the impacts of abiotic stress within this species.
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  • 文章类型: Journal Article
    背景:心裂,一组热带树木(约20spp.)在樟科中,有两栖-太平洋分离分布:10种分布在东南亚,而南美的热带雨林则限制了8种。以前,使用两个核标记的系统发育分析解决了拉丁美洲五个物种之间的关系。然而,亚洲物种之间的系统发育关系仍然鲜为人知。
    结果:这里,我们首先确定了完整的线粒体基因组(有丝分裂基因组),质体,和C.henryi的核核糖体顺反子(nrDNA)序列,长度为1,168,029bp,154,938个基点,6495bp,分别。我们在C.henryi的有丝分裂基因组中发现了2233个重复序列和368个潜在的SSR,在其有丝分裂基因组和质体之间发现了50个同源DNA片段。基因合成分析显示,木兰的有丝分裂基因组中有大量重排,HernandiaNymphaeifolia,和C.henryi,其中只有六个保守的成簇基因。为了重建亚洲十种Caryodaphnopsis物种的关系,我们创建了三个数据集:一个是有丝分裂基因组(编码基因和十个基因间区域),另一个是质体(全基因组),另一个是核核糖体顺反子。所有的22个Caryodaphnopsis个体被分为四个,五,和基于有丝分裂基因组的六个不同的进化枝,质体,和nrDNA数据集,分别。
    结论:该研究显示了Caryodaphnopsis物种的核和细胞器基因组数据内部和之间的系统发育冲突。中国河口和麻栗坡的同胞石竹物种可能与不完整的谱系分类有关,叶绿体捕获,和/或杂交,将该物种作为进化史上的一个复合体混合在一起。
    BACKGROUND: Caryodaphnopsis, a group of tropical trees (ca. 20 spp.) in the family Lauraceae, has an amphi-Pacific disjunct distribution: ten species are distributed in Southeast Asia, while eight species are restricted to tropical rainforests in South America. Previously, phylogenetic analyses using two nuclear markers resolved the relationships among the five species from Latin America. However, the phylogenetic relationships between the species in Asia remain poorly known.
    RESULTS: Here, we first determined the complete mitochondrial genome (mitogenome), plastome, and the nuclear ribosomal cistron (nrDNA) sequences of C. henryi with lengths of 1,168,029 bp, 154,938 bp, and 6495 bp, respectively. We found 2233 repeats and 368 potential SSRs in the mitogenome of C. henryi and 50 homologous DNA fragments between its mitogenome and plastome. Gene synteny analysis revealed a mass of rearrangements in the mitogenomes of Magnolia biondii, Hernandia nymphaeifolia, and C. henryi and only six conserved clustered genes among them. In order to reconstruct relationships for the ten Caryodaphnopsis species in Asia, we created three datasets: one for the mitogenome (coding genes and ten intergenic regions), another for the plastome (whole genome), and the other for the nuclear ribosomal cistron. All of the 22 Caryodaphnopsis individuals were divided into four, five, and six different clades in the phylogenies based on mitogenome, plastome, and nrDNA datasets, respectively.
    CONCLUSIONS: The study showed phylogenetic conflicts within and between nuclear and organellar genome data of Caryodaphnopsis species. The sympatric Caryodaphnopsis species in Hekou and Malipo SW China may be related to the incomplete lineage sorting, chloroplast capture, and/or hybridization, which mixed the species as a complex in their evolutionary history.
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  • 文章类型: Journal Article
    背景:Sassafrastzumu,一种优雅的落叶树栖物种,属于杰出的樟科中的受人尊敬的樟树属。凭借其巨大的商业价值,近几十年来,不断升级的市场需求和自然栖息地内不可预见的人类活动已成为对S.tzumu的新威胁,因此有必要研究其遗传多样性和影响因素,提出相关的保护策略。
    结果:通过利用基因分型-序列(GBS)技术,我们从来自13个不同的Sassafraastzumu自然种群的106个人的队列中获得了单核苷酸多态性(SNP)的综合数据库,分布在中国各个山区。通过我们细致的分析,我们的目标是解开这些S.tzumu种群中复杂的遗传多样性和结构,同时调查可能影响遗传距离的各种因素。我们的初步发现揭示了中等水平的遗传分化(FST=0.103,p<0.01),伴随着S.tzumu种群之间相当高的遗传多样性。令人鼓舞的是,我们的主成分分析描绘了中国两个不同的遗传和地理区域的生动画面,基因流动似乎受到了一定的限制。此外,采用复杂的随机化多元矩阵回归(MMRR)分析方法,我们成功地确定,与地理距离相比,环境距离对遗传距离的影响更为明显(βE=0.46,p<0.01;βD=0.16,p<0.01)。这一有趣的发现强调了环境因素在塑造S.tzumu种群遗传景观中的潜在意义。
    结论:在我们的调查中,S.tzumu种群之间的遗传变异表现出中等程度的分化,随着遗传多样性水平的提高。与地理距离相比,环境距离对S.tzumu的遗传多样性的影响更大。制定和实施细致的管理和保护策略以保护S.tzumu的宝贵遗传资源至关重要。
    BACKGROUND: Sassafras tzumu, an elegant deciduous arboreal species, belongs to the esteemed genus Sassafras within the distinguished family Lauraceae. With its immense commercial value, escalating market demands and unforeseen human activities within its natural habitat have emerged as new threats to S. tzumu in recent decades, so it is necessary to study its genetic diversity and influencing factors, to propose correlative conservation strategies.
    RESULTS: By utilizing genotyping-by-sequence (GBS) technology, we acquired a comprehensive database of single nucleotide polymorphisms (SNPs) from a cohort of 106 individuals sourced from 13 diverse Sassafras tzumu natural populations, scattered across various Chinese mountainous regions. Through our meticulous analysis, we aimed to unravel the intricate genetic diversity and structure within these S. tzumu populations, while simultaneously investigating the various factors that potentially shape genetic distance. Our preliminary findings unveiled a moderate level of genetic differentiation (FST = 0.103, p < 0.01), accompanied by a reasonably high genetic diversity among the S. tzumu populations. Encouragingly, our principal component analysis painted a vivid picture of two distinct genetic and geographical regions across China, where gene flow appeared to be somewhat restricted. Furthermore, employing the sophisticated multiple matrix regression with randomization (MMRR) analysis method, we successfully ascertained that environmental distance exerted a more pronounced impact on genetic distance when compared to geographical distance (βE = 0.46, p < 0.01; βD = 0.16, p < 0.01). This intriguing discovery underscores the potential significance of environmental factors in shaping the genetic landscape of S. tzumu populations.
    CONCLUSIONS: The genetic variance among populations of S. tzumu in our investigation exhibited a moderate degree of differentiation, alongside a heightened level of genetic diversity. The environmental distance of S. tzumu had a greater impact on its genetic diversity than geographical distance. It is of utmost significance to formulate and implement meticulous management and conservation strategies to safeguard the invaluable genetic resources of S. tzumu.
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  • 文章类型: Journal Article
    基于形态学和分子证据,已证实Alseodaphnopsismaguanensis与A.hokouensions是同源的。因此,Alseodaphnopsismaguanensis在这里被视为A.hokouensis的同义词。根据本研究中的IUCN红色名录类别和标准,还重新评估了Alseodaphnopsishokouensis的保护状况。
    Based on both morphological and molecular evidence, it is confirmed that Alseodaphnopsismaguanensis is conspecific with A.hokouensis. Hence, Alseodaphnopsismaguanensis is treated as a synonym of A.hokouensis here. The conservation status of Alseodaphnopsishokouensis is also re-evaluated according to the IUCN Red List Categories and Criteria in this study.
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  • 文章类型: Journal Article
    在我们寻找神经保护剂的过程中,六个先前未描述的高度氧化的愈创烷倍半萜,LinderaggrolsA-F(1-6),连同三种已知的倍半萜,是从黑斑草(Sims)Kosterm的根中分离出来的。通过NMR光谱技术和单晶X射线衍射实验的结合,建立了包括绝对构型在内的结构。化合物1-6代表愈创烷12(8)的第一个实例,15(6)-二内酯。此外,化合物6具有罕见的1,8-O-桥。针对擦除素诱导的HT-22细胞铁凋亡的神经保护作用表明,一些化合物在20.0μM时表现出神经保护作用。
    In our search for neuroprotective agents, six previously undescribed highly oxidized guaiane sesquiterpenes, linderaggrols A-F (1-6), together with three known sesquiterpenes, were isolated from the roots of Lindera aggregata (Sims) Kosterm. Their structures including absolute configurations were established by a combination of NMR spectroscopic techniques and single crystal X-ray diffraction experiments. Compounds 1-6 represented the first instances of guaiane 12(8),15(6)-dilactones. Additionally, compound 6 possessed a rare 1,8-O-bridge. Neuroprotective effects against erastin-induced ferroptosis on HT-22 cells showed that some compounds demonstrated neuroprotective effects at 20.0 μM.
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