LILR

LILR
  • 文章类型: Journal Article
    白细胞免疫球蛋白样受体(LILR)是由属于骨髓和淋巴谱系的免疫细胞类型表达的抑制性或刺激性受体家族。LILR家族的几个成员认识到主要的组织相容性复合物I类,因此在包括怀孕在内的一系列临床情况中起着重要作用。此外,配对免疫球蛋白样受体(PIR),LILR的鼠直系同源物,与单核细胞的实验性移植同种异体识别有关,并有助于诱导供体特异性单核细胞记忆。在非自我识别之后,活化PIR在单核细胞表面短暂过表达,并参与供体特异性单核细胞募集,导致体内移植物排斥。在本研究中,我们在肾移植排斥反应的情况下,定位了LILR表达及其各自报道的配体在肾移植和循环细胞中的单细胞水平.受者来源的单核细胞显示渗入供体组织并分化成巨噬细胞。因此,我们还研究了体外单核细胞到巨噬细胞分化过程中的LILR表达,以表征直接有助于同种异体识别的骨髓群。总之,我们的结果强调了非经典单核细胞和CD68M1巨噬细胞是肾移植中LILRs-配体相互作用的关键参与者。
    Leukocyte immunoglobulin-like receptors (LILRs) are a family of inhibitory or stimulatory receptors expressed by immune cell types belonging to both myeloid and lymphoid lineage. Several members of the LILR family recognize major histocompatibility complex class I and thus play important roles in a range of clinical situations including pregnancy. Moreover, paired immunoglobulin-like receptors (PIRs), the murine orthologs of LILRs, are implicated in experimental transplant allorecognition by monocytes and contribute to the induction of donor-specific monocyte-memory. After non-self recognition, activating PIRs are transiently overexpressed at the surface of monocytes and participate in donor-specific monocyte recruitment, leading to graft rejection in vivo. In the present study, we mapped LILR expression and also their respective reported ligands at single cell level in the renal allograft and circulating cells in the context of kidney transplant rejection. Recipient-derived monocytes were shown to infiltrate the donor tissue and to differentiate into macrophages. We thus also investigate LILR expression during in vitro monocyte-to-macrophage differentiation in order to characterize the myeloid population that directly contribute to allorecognition. Altogether our results emphasize non-classical monocytes and CD68+ M1 macrophages as key players in LILRs-ligand interaction in kidney transplantation.
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  • 文章类型: Journal Article
    人类染色体19q13.4上的白细胞免疫球蛋白(Ig)样受体(LILRs)编码11个免疫球蛋白超家族受体,在人群内部和人群之间表现出遗传多样性。在LILR基因中,LILRB3和LILRA6周围的基因组区域由于其显著的序列同源性而尚未被完全表征,这使得很难区分它们。为了检查LILRB3和LILRA6基因组区域,一个名为JoGo-LILRCNCaller的工具,可以从短阅读全基因组测序(srWGS)数据中调用拷贝数,应用于包含2,504个样本的广泛的国际srWGS数据集。在这个过程中,在3个样本中检测到以前未报告的LILRB3和LILRA6丢失.使用这些样本的长读数测序,我们在日本人群的LILRB3和LILRA6基因组区域中发现了一个新的大缺失(33,692bp)。这个缺失跨越了三个基因,LILRB3,LILRA6和LILRB5,导致LILRB3外显子12-13位于LILRB5外显子1-12的下游,而LILRA6的丢失,表明LILRB5和LILRB3(LILRB5-3)之间的杂合基因的潜在表达。还验证了LILRB5-3杂合基因的转录和随后的翻译。杂合连接位于胞内结构域内,导致LILRB5胞外结构域与具有三个免疫受体基于酪氨酸的抑制基序(ITIM)的部分LILRB3胞内结构域融合,表明LILRB5-3获得了一种新的信号功能。将JoGo-LILR工具进一步应用于srWGS样品表明CEU群体中存在LILRB5-3杂合基因。我们的发现为LILR家族的遗传和功能多样性提供了见解。
    Leukocyte immunoglobulin (Ig)-like receptors (LILRs) on human chromosome 19q13.4 encode 11 immunoglobulin superfamily receptors, exhibiting genetic diversity within and between human populations. Among the LILR genes, the genomic region surrounding LILRB3 and LILRA6 has yet to be fully characterized due to their significant sequence homology, which makes it difficult to differentiate between them. To examine the LILRB3 and LILRA6 genomic region, a tool named JoGo-LILR CN Caller, which can call copy number from short-read whole genome sequencing (srWGS) data, was applied to an extensive international srWGS dataset comprising 2,504 samples. During this process, a previously unreported loss of both LILRB3 and LILRA6 was detected in three samples. Using long-read sequencing of these samples, we have discovered a novel large deletion (33,692 bp) in the LILRB3 and LILRA6 genomic regions in the Japanese population. This deletion spanned three genes, LILRB3, LILRA6, and LILRB5, resulting in LILRB3 exons 12-13 being located immediately downstream of LILRB5 exons 1-12 with the loss of LILRA6, suggesting the potential expression of a hybrid gene between LILRB5 and LILRB3 (LILRB5-3). Transcription and subsequent translation of the LILRB5-3 hybrid gene were also verified. The hybrid junction was located within the intracellular domain, resulting in an LILRB5 extracellular domain fused to a partial LILRB3 intracellular domain with three immunoreceptor tyrosine-based inhibitory motifs (ITIMs), suggesting that LILRB5-3 acquired a novel signaling function. Further application of the JoGo-LILR tool to srWGS samples suggested the presence of the LILRB5-3 hybrid gene in the CEU population. Our findings provide insight into the genetic and functional diversity of the LILR family.
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  • 文章类型: English Abstract
    OBJECTIVE: To prove the effectiveness of the low-intensity laser radiation application in the treatment of wounds of different origin.
    METHODS: The clinical study involved 110 persons, divided into 55 subjects in both the study and control groups. The patients of the study group were exposed to the long-wave short-pulse neodymium laser immediately and within 35 days after interventions with a skin incision using it, in a way that wound treated with laser received low-level laser therapy. The control group patients\' wounds were treated with standard methods by the means of topical drugs corresponding to the clinical manifestations of the wound process in each particular case. The study was carried out in the hospital of the department of maxillofacial and plastic surgery of the dental complex of the «Russian University of Medicine» from 2019 to 2022, and further conservative treatment was conducted in the department of dermatology and cosmetology of the University Hospital of the Medical Graduate School (Institute) of the RSSU. All wounds were classified into three groups for the convenience of systematization and formation of a generalized treatment protocol for postoperative surgical wounds.
    RESULTS: The objectivity and optimality of the chosen by us actions were confirmed in the conducted work. The formed scars were visually assessed on the POSAS scale at the end of the treatment by patients and 4 independent doctors, as well as each scar was visually assessed by four independent doctors and patients. At the end of the study we formed and proposed an algorithm for the treatment of surgical wounds of various origins. The parameters of the Aerolase Neo Light Pod neodymium laser for the treatment of patients with different types of skin wounds were clinically determined. Experimentally proven properties of the Aerolase Neo Light Pod neodymium laser on accelerating the healing process of surgical wounds through photobiomodulation mechanism support their regeneration with the formation of negligible normotrophic scars, as well as reduce the length of patients\' treatment in surgical hospitals, as compared to patients receiving standard external drugs.
    UNASSIGNED: Оценить эффективность применения низкоинтенсивного лазерного излучения в лечении ран разного генеза.
    UNASSIGNED: В клиническом исследовании приняли участие 110 человек, по 55 человек в двух группах — основной и контрольной. Пациенты основной группы подвергались воздействию длинноволнового короткоимпульсного неодимового лазера непосредственно сразу и в течение 35 сут после проведения им операций, выполненных с кожным разрезом, таким образом, что на рану действовало низкоинтенсивное лазерное излучение. Раны пациентов контрольной группы лечили общепринятыми методами с помощью топических средств, соответствующих клиническим проявлениям раневого процесса в каждом конкретном случае. Исследование выполнено в стационаре отделения челюстно-лицевой и пластической хирургии стоматологического комплекса ФГБОУ ВО «Российский университет медицины» Минздрава России с 2019 по 2022 г., а дальнейшее консервативное лечение проведено в отделении дерматологии и косметологии Университетской клиники Медицинской высшей школы (института) ФГБОУ ВО «Российский государственный социальный университет» Минобрнауки России. Для удобства систематизации и формирования обобщенного протокола лечения послеоперационных хирургических ран все раны классифицированы на 3 группы.
    UNASSIGNED: В ходе выполненной работы подтверждены объективность и оптимальность выбранных нами действий. В завершение лечения пациентами и 4 независимыми врачами выполнена визуальная оценка образовавшихся рубцов по шкале POSAS. В конце исследования нами сформирован и предложен алгоритм лечения хирургических ран различного генеза; клинически определены параметры неодимового лазера Aerolase Neo Light Pod для лечения пациентов с разными видами кожных ран.
    UNASSIGNED: Экспериментально доказанные свойства неодимового лазера Aerolase Neo Light Pod по ускорению процесса заживления хирургических ран посредством механизма фотобиомодуляции способствуют их регенерации с формированием малозаметных нормотрофических рубцов, а также сокращают сроки лечения пациентов хирургических стационаров по сравнению с пациентами, получающими в качестве лечения стандартные препараты для наружного применения.
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  • 文章类型: Journal Article
    背景:人乳头瘤病毒(HPV)诱导头颈部鳞状细胞癌(HNSCC)和肛门生殖器癌的子集,特别是宫颈癌(CC)。导致肿瘤发生的主要病毒蛋白是E6和E7癌蛋白,其表达通常在病毒DNA整合到宿主基因组后增强。最近,在大约一半与HPV感染相关的HNSCC和CC病例中,已经提出了另一种肿瘤发生途径.该途径的特征在于染色体外HPV持续存在和病毒E2、E4和E5基因的表达增加。E6、E7、E5和E2蛋白已显示出修饰许多细胞免疫相关基因的表达。抗肿瘤免疫反应是HPV驱动的癌症预后的关键因素。其特征可能有助于预测和个性化越来越多使用的癌症免疫疗法。
    方法:我们分析了HPV依赖性肿瘤的免疫特征及其与癌变类型的关系。来自癌症基因组图谱的转录组HNSCC和CC数据集用于该分析。
    结果:与免疫相关基因的聚类导致两种肿瘤类型中HPV16阳性鳞状细胞癌的两个簇:簇1具有更高的免疫反应激活,包括刺激抗原加工和呈递途径,这与更高的免疫细胞浸润和更好的总体生存率有关,簇2的特征是角质化。在CC中,肿瘤样本在簇1和簇2中的分布不依赖于E2/E5的表达水平,但是在HNSCC,大多数E2/E5高肿瘤位于第1组,E2/E5低肿瘤位于第2组。进一步的分析未揭示E2/E5水平与免疫相关基因表达之间的任何关联。
    结论:我们的结果表明,虽然在HPV驱动的肿瘤中检测到与编码抗原加工和呈递机制成分的基因的保留表达相关的免疫反应可能是预后更好的标志物,也是治疗选择的重要因素。癌变的类型似乎在诱导抗肿瘤免疫中起决定性作用。
    Human papillomaviruses (HPVs) induce a subset of head and neck squamous cell carcinomas (HNSCC) and anogenital cancers, particularly cervical cancer (CC). The major viral proteins that contribute to tumorigenesis are the E6 and E7 oncoproteins, whose expression is usually enhanced after the integration of viral DNA into the host genome. Recently, an alternative tumorigenesis pathway has been suggested in approximately half of HNSCC and CC cases associated with HPV infection. This pathway is characterized by extrachromosomal HPV persistence and increased expression of the viral E2, E4, and E5 genes. The E6, E7, E5, and E2 proteins have been shown to modify the expression of numerous cellular immune-related genes. The antitumor immune response is a critical factor in the prognosis of HPV-driven cancers, and its characterization may contribute to the prediction and personalization of the increasingly used cancer immunotherapy.
    We analyzed the immune characteristics of HPV-dependent tumors and their association with carcinogenesis types. Transcriptomic HNSCC and CC datasets from The Cancer Genome Atlas were used for this analysis.
    Clustering with immune-related genes resulted in two clusters of HPV16-positive squamous cell carcinomas in both tumor types: cluster 1 had higher activation of immune responses, including stimulation of the antigen processing and presentation pathway, which was associated with higher immune cell infiltration and better overall survival, and cluster 2 was characterized by keratinization. In CC, the distribution of tumor samples into clusters 1 and 2 did not depend on the level of E2/E5 expression, but in HNSCC, most E2/E5-high tumors were localized in cluster 1 and E2/E5-low tumors in cluster 2. Further analysis did not reveal any association between the E2/E5 levels and the expression of immune-related genes.
    Our results suggest that while the detection of immune responses associated with preserved expression of genes encoding components of antigen processing and presentation machinery in HPV-driven tumors may be markers of better prognosis and an important factor in therapy selection, the type of carcinogenesis does not seem to play a decisive role in the induction of antitumor immunity.
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  • 文章类型: Journal Article
    人类白细胞免疫球蛋白(Ig)样受体(LILR)是11个先天免疫调节受体的家族,主要在淋巴和骨髓细胞上表达。LILR是激活的(LILRA)或抑制的(LILRB),这取决于它们相关的信号传导结构域(D)。除可溶性LILRA3外,LILRAs介导免疫激活,而LILRB1-5主要抑制免疫反应并介导耐受性。LILRs的异常表达和功能与一系列病理有关,包括免疫功能不全(感染和恶性肿瘤)和明显的免疫反应(自身免疫和同种反应),提示LILRs可能是靶向免疫疗法的优秀候选者。这篇综述将讨论这个广泛的免疫受体家族的生物学和临床相关性,并将总结在疾病环境中靶向LILR的最新进展。比如癌症,随着研究这些受体的治疗靶向的临床试验的更新。
    Human leukocyte immunoglobulin (Ig)-like receptors (LILR) are a family of 11 innate immunomodulatory receptors, primarily expressed on lymphoid and myeloid cells. LILRs are either activating (LILRA) or inhibitory (LILRB) depending on their associated signalling domains (D). With the exception of the soluble LILRA3, LILRAs mediate immune activation, while LILRB1-5 primarily inhibit immune responses and mediate tolerance. Abnormal expression and function of LILRs is associated with a range of pathologies, including immune insufficiency (infection and malignancy) and overt immune responses (autoimmunity and alloresponses), suggesting LILRs may be excellent candidates for targeted immunotherapies. This review will discuss the biology and clinical relevance of this extensive family of immune receptors and will summarise the recent developments in targeting LILRs in disease settings, such as cancer, with an update on the clinical trials investigating the therapeutic targeting of these receptors.
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  • 文章类型: Journal Article
    哺乳动物白细胞受体复合物(LRC)染色体区可含有杀伤细胞免疫球蛋白样受体(KIR)和/或白细胞免疫球蛋白样受体(LILR)集合的基因家族以及各种成帧基因。这个复杂的区域在人类中有很好的描述,老鼠,和一些家畜。尽管在一些食肉动物中已知单个KIR基因,LILR基因的互补序列在很大程度上仍然未知,因为在基于短读的基因组中,高同源性区域的组装存在障碍.
    作为felid免疫基因组分析的一部分,这项研究的重点是在参考基因组中寻找LRC基因,并在Felidae中注释LILR基因。优先寻找基于单分子长读数测序的染色体水平基因组,并与食肉动物的代表进行比较。
    在Felidae和加利福尼亚海狮中发现了七个假定的功能性LILR基因,犬科有4到5个基因,还有4到9个基因.它们形成两个谱系,如在Bovidae中看到的。激活LILRs的功能基因与抑制性LILRs的比例略大于Felidae和Canidae中的抑制性基因;在加利福尼亚海狮中看到了相反的情况。这个比例甚至在除欧亚水獭以外的所有Mustelidae中,具有激活LILR的优势。鉴定了各种数量的LILR假基因。
    在猫科动物和其他食肉动物中,LRC的结构相当保守。LILR亚区在Felidae中保守,在犬科中略有差异,但是它在Mustelidae中采取了各种进化路径。总的来说,LILR基因的假化过程似乎更频繁地激活受体。系统发育分析发现,食肉动物中没有直接的直向同源物,这证实了哺乳动物中LILR的快速进化。
    The mammalian Leukocyte Receptor Complex (LRC) chromosomal region may contain gene families for the killer cell immunoglobulin-like receptor (KIR) and/or leukocyte immunoglobulin-like receptor (LILR) collections as well as various framing genes. This complex region is well described in humans, mice, and some domestic animals. Although single KIR genes are known in some Carnivora, their complements of LILR genes remain largely unknown due to obstacles in the assembly of regions of high homology in short-read based genomes.
    As part of the analysis of felid immunogenomes, this study focuses on the search for LRC genes in reference genomes and the annotation of LILR genes in Felidae. Chromosome-level genomes based on single-molecule long-read sequencing were preferentially sought and compared to representatives of the Carnivora.
    Seven putatively functional LILR genes were found across the Felidae and in the Californian sea lion, four to five genes in Canidae, and four to nine genes in Mustelidae. They form two lineages, as seen in the Bovidae. The ratio of functional genes for activating LILRs to inhibitory LILRs is slightly in favor of inhibitory genes in the Felidae and the Canidae; the reverse is seen in the Californian sea lion. This ratio is even in all of the Mustelidae except the Eurasian otter, which has a predominance of activating LILRs. Various numbers of LILR pseudogenes were identified.
    The structure of the LRC is rather conservative in felids and the other Carnivora studied. The LILR sub-region is conserved within the Felidae and has slight differences in the Canidae, but it has taken various evolutionary paths in the Mustelidae. Overall, the process of pseudogenization of LILR genes seems to be more frequent for activating receptors. Phylogenetic analysis found no direct orthologues across the Carnivora which corroborate the rapid evolution of LILRs seen in mammals.
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  • 文章类型: Journal Article
    白细胞免疫球蛋白样受体(LILR)B3和LILRA6基因编码同源髓样抑制和激活孤儿受体,分别。这两个基因在氨基酸水平上都表现出惊人的高水平多态性,而LILRA6(而不是LILRB3)则表现出拷贝数变异(CNV)。尽管已经报道了两个基因的多个等位基因,关于人类中这些等位基因频率的数据有限。我们已经对91名欧洲血统的健康献血者中编码信号肽和胞外域的LILRB3/A6外显子进行了测序,这些献血者每个二倍体基因组携带一个或两个LILRA6拷贝。分析具有两个LILRA6拷贝的个体之间的单倍型,代表该队列中的大多数(N=86),显示常见的LILRB3和LILRA6等位基因在受体的同源区域编码一些不同的氨基酸序列,这可能会对它们各自的功能产生不同的影响。具有一个与一个的个体的序列比较LILRA6的两个拷贝支持LILRB3和LILRA6之间的非等位基因同源重组,作为产生LILRA6CNV和LILRB3多样性的机制。这些数据比先前描述的更详细地表征了LILRB3/LILRA6遗传变异,并强调需要确定它们的配体。
    The leukocyte immunoglobulin-like receptor (LILR)B3 and LILRA6 genes encode homologous myeloid inhibitory and activating orphan receptors, respectively. Both genes exhibit a strikingly high level of polymorphism at the amino acid level and LILRA6 (but not LILRB3) displays copy number variation (CNV). Although multiple alleles have been reported for both genes, limited data is available on frequencies of these alleles among humans. We have sequenced LILRB3/A6 exons encoding signal peptides and ectodomains in 91 healthy blood donors of European descent who carry one or two copies of LILRA6 per diploid genome. Analysis of haplotypes among individuals with two LILRA6 copies, representing the majority in this cohort (N = 86), shows that common LILRB3 and LILRA6 alleles encode some distinct amino acid sequences in homologous regions of the receptors, which could potentially impact their respective functions differentially. Comparison of sequences in individuals with one vs. two copies of LILRA6 supports non-allelic homologous recombination between LILRB3 and LILRA6 as a mechanism for generating LILRA6 CNV and LILRB3 diversity. These data characterize LILRB3/LILRA6 genetic variation in more detail than previously described and underscore the need to determine their ligands.
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  • 文章类型: Journal Article
    白细胞免疫球蛋白样受体B4(LILRB4)是LILR家族中的抑制性受体,主要在骨髓来源的正常和恶性人细胞上表达。通过与配体结合,LILRB4被激活,随后将衔接子招募到细胞质免疫受体酪氨酸抑制基序,以启动不同的信号级联,因此在生理和病理状况中起着重要作用,包括自身免疫性疾病,微生物感染,和癌症。在正常骨髓细胞中,LILRB4调节固有细胞活化和分化。在疾病相关或恶性骨髓细胞中,LILRB4与疾病严重程度或患者生存显着相关,并抑制T细胞,从而参与各种疾病的发病机制。总之,LILRB4作为骨髓细胞的免疫检查点,可能是各种人类免疫疾病的有希望的治疗靶点。尤其是癌症免疫疗法。
    Leukocyte immunoglobulin-like receptor B4 (LILRB4) is an inhibitory receptor in the LILR family mainly expressed on normal and malignant human cells of myeloid origin. By binding to ligands, LILRB4 is activated and subsequently recruits adaptors to cytoplasmic immunoreceptor tyrosine inhibitory motifs to initiate different signaling cascades, thus playing an important role in physiological and pathological conditions, including autoimmune diseases, microbial infections, and cancers. In normal myeloid cells, LILRB4 regulates intrinsic cell activation and differentiation. In disease-associated or malignant myeloid cells, LILRB4 is significantly correlated with disease severity or patient survival and suppresses T cells, thereby participating in the pathogenesis of various diseases. In summary, LILRB4 functions as an immune checkpoint on myeloid cells and may be a promising therapeutic target for various human immune diseases, especially for cancer immunotherapy.
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  • 文章类型: Journal Article
    中性粒细胞在防御微生物方面具有至关重要的作用。免疫受体允许嗜中性粒细胞感知它们的环境,具有许多受体功能以识别感染迹象并促进抗微生物效应物功能。然而,中性粒细胞反应必须严格调节,以防止过度炎症和组织损伤,和调节是通过表达可以提高激活阈值的抑制性受体来实现的。白细胞免疫球蛋白样受体(LILR)家族包含可上调或下调免疫细胞活性的激活和抑制成员。LILR的新配体和功能不断涌现。了解LILR在中性粒细胞生物学中的作用是普遍感兴趣的,因为它们可以激活和抑制中性粒细胞的抗微生物反应,并且因为几种人类病原体利用这些受体进行免疫逃避。本文就LILR在中性粒细胞生物学中的作用作一综述。我们专注于中性粒细胞上LILR表达的当前知识,LILR对中性粒细胞的已知功能,以及这些受体如何在感染过程中有助于塑造中性粒细胞反应。
    Neutrophils have a crucial role in defense against microbes. Immune receptors allow neutrophils to sense their environment, with many receptors functioning to recognize signs of infection and to promote antimicrobial effector functions. However, the neutrophil response must be tightly regulated to prevent excessive inflammation and tissue damage, and regulation is achieved by expression of inhibitory receptors that can raise activation thresholds. The leukocyte immunoglobulin-like receptor (LILR) family contain activating and inhibitory members that can up- or down-regulate immune cell activity. New ligands and functions for LILR continue to emerge. Understanding the role of LILR in neutrophil biology is of general interest as they can activate and suppress antimicrobial responses of neutrophils and because several human pathogens exploit these receptors for immune evasion. This review focuses on the role of LILR in neutrophil biology. We focus on the current knowledge of LILR expression on neutrophils, the known functions of LILR on neutrophils, and how these receptors may contribute to shaping neutrophil responses during infection.
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  • 文章类型: Journal Article
    人类的白细胞受体复合物(LRC)编码许多具有免疫球蛋白样(Ig样)胞外域的受体,包括在自然杀伤(NK)细胞上表达的杀手Ig样受体(KIR),在骨髓和B细胞上表达的白细胞Ig样受体(LILRs),和Fc受体(FcR),所有这些在免疫反应中都有重要作用。这些高度相关的基因编码激活受体,在跨膜区带有带正电荷的残基,在胞质尾部具有基于免疫酪氨酸的基序(ITIM)的抑制性受体,和双功能受体。相关的鸡Ig样受体(ChIR)几乎都在微染色体上发现,超过100个激活(A),抑制性(B),和双功能(AB)基因,带有一个或两个细胞外Ig样结构域,散布在单个鸡的基因组中超过500-1,000kB。测序研究表明,ChIR单倍型之间存在快速分歧和少量重叠,所以我们希望开始了解他们的基因。我们选择使用杂交技术,参考链介导的构象分析(RSCA),为了检查ChIR-AB1家族,有中等数量的基因分散在微染色体上。使用荧光标记的参考(FLR),我们发现RSCA和ChIR-AB1细胞外外显子测序给出了两组峰,其迁移率与FLR的序列关系相关。我们使用这个系统来检查广泛使用和特征明确的实验鸡系,每个品系只能找到一个或几个简单的ChIR单倍型,具有相似数量的峰值。我们从商业饲养员的肉鸡生产线和一群红色丛林猫头鹰中发现了更复杂的图案,但是来自另一个商业鸡系的父母和后代的三重奏表明,复杂的模式是由于杂合性,表明这些鸟类的单倍型中的峰数量相对稳定。在来自商业生产线的所有个体中发现了一些ChIR-AB1峰,其中一些是与红色丛林猫头鹰和最初来自产蛋鸡的实验系共享的。总的来说,这项分析表明,ChIR基因座的明显复杂性背后有一些简单的特征。
    The leukocyte receptor complex (LRC) in humans encodes many receptors with immunoglobulin-like (Ig-like) extracellular domains, including the killer Ig-like receptors (KIRs) expressed on natural killer (NK) cells among others, the leukocyte Ig-like receptors (LILRs) expressed on myeloid and B cells, and an Fc receptor (FcR), all of which have important roles in the immune response. These highly-related genes encode activating receptors with positively-charged residues in the transmembrane region, inhibitory receptors with immuno-tyrosine based motifs (ITIMs) in the cytoplasmic tail, and bi-functional receptors with both. The related chicken Ig-like receptors (ChIRs) are almost all found together on a microchromosome, with over 100 activating (A), inhibitory (B), and bi-functional (AB) genes, bearing either one or two extracellular Ig-like domains, interspersed over 500-1,000 kB in the genome of an individual chicken. Sequencing studies have suggested rapid divergence and little overlap between ChIR haplotypes, so we wished to begin to understand their genetics. We chose to use a hybridization technique, reference strand-mediated conformational analysis (RSCA), to examine the ChIR-AB1 family, with a moderate number of genes dispersed across the microchromosome. Using fluorescently-labeled references (FLR), we found that RSCA and sequencing of ChIR-AB1 extracellular exon gave two groups of peaks with mobility correlated with sequence relationship to the FLR. We used this system to examine widely-used and well-characterized experimental chicken lines, finding only one or a few simple ChIR haplotypes for each line, with similar numbers of peaks overall. We found much more complicated patterns from a broiler line from a commercial breeder and a flock of red junglefowl, but trios of parents and offspring from another commercial chicken line show that the complicated patterns are due to heterozygosity, indicating a relatively stable number of peaks within haplotypes of these birds. Some ChIR-AB1 peaks were found in all individuals from the commercial lines, and some of these were shared with red junglefowl and the experimental lines derived originally from egg-laying chickens. Overall, this analysis suggests that there are some simple features underlying the apparent complexity of the ChIR locus.
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