Kinetic model

动力学模型
  • 文章类型: Journal Article
    氯化乙烯(CEs)污染的地下水的生物修复在实际修复项目中引起了越来越多的关注。然而,在底物和环境因素的约束下,微生物代谢过程的建模是不充分的。这项研究开发了一种新的动力学模型,其中结合了逻辑模型和Dual-Monod动力学,以表示受控制的微生物生长与CE污染的地下水中生物可利用的底物之间的相互作用。所提出的模型是基于离散的观察,以模拟在基质和环境条件的约束下的微生物生长,减少模型所需的观测数据量。同时,提出的模型引入了两个新的动力学参数,微生物生长的有效比生长速率和实际自限系数,简化了独立参数的数量。还开发了一种基于拟牛顿算法的参数估计方法。基于假设数据对模型进行了验证,实验结果,和发布的数据集,证明了地下水系统中微生物生长和PCE顺序生物降解的成功模拟(*E<0.3)。监测持续时间和采样时间表对估计生物参数有重大影响,当来自极低底物浓度或微生物生长下降时期的数据参与参数估计时,会引起很大的误差。研究表明,所提出的动力学模型提供了一个新的见解来表达微生物种群生长的局限性,由于可用的底物和环境因素,并希望在受CE污染的实际场所中应用。
    The bioremediation of chlorinated ethenes (CEs) contaminated groundwater is attracting increasingly attention in practical remediation projects. However, modelling of microbial metabolic processes under the constraints of substrate and environmental factors is inadequate. This study developed a new kinetic model, which incorporated the logistic model and Dual-Monod kinetic to represent the interaction between the controlled microbial growth and the bioavailable substrates in CE-contaminated groundwater. The proposed model was based on discrete observations to simulate microbial growth under the constraints of substrate and environmental conditions, reducing the amount of observational data required for the model. Meanwhile, the proposed model introduced two new kinetic parameters, the effective specific growth rate μeff and the real self-limiting coefficient of microbial growth keff,sl, to simplified the number of independent parameters. A parameter estimation method based on the quasi-Newton\'s algorithm for the proposed model was also developed. The model was validated based on the hypothetical data, experimental results, and a published dataset, demonstrated the successful simulation of microbial growth and the sequential biodegradation of PCE in groundwater systems (*E < 0.3). The monitoring duration and the sampling schedule have significant impacts on estimating the biological parameters, and large errors would be induced when the data from the periods of extremely low substrate concentration or microbial growth decline were involved in parameter estimation. The research suggested that the proposed kinetic model provided a new insight to express the limitation of microbial population growth due to the available substrates and environmental factors, and is hoping to be applied in actual CE-contaminated sites.
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  • 文章类型: Journal Article
    为了有效地利用红松种子鳞片的资源,一种林业废物,对提取的严格研究,净化,稳定性,并对来自这些种子鳞片的原花青素进行了自由基清除能力。动力学模型表明,在超声条件下,原花青素含量在0.5h内达到2.66mg/g。最佳储存参数包括黑暗,4°C,和pH4。混合物的聚合度以及高,低聚合物组分的聚合度分别为4.89,7.42和3.07,低聚合物组分表现出最高的自由基清除活性。通过HPLC-QE-MS/MS,1HNMR,和FT-IR分析,我们鉴定了原花青素B1,原花青素B2,(-)-表儿茶素,和聚合三聚体酯。红松原花青素具有较高的分子量,复杂的内部分子结构,和值得称赞的稳定性,结晶需要升高的温度。因此,来自红松种子鳞片的原花青素已成为非常有前途的新型天然抗氧化剂。
    To efficiently harness resources from Pinus koraiensis seed scales, a type of forestry waste, rigorous studies on the extraction, purification, stability, and free radical scavenging capacity of the proanthocyanidins derived from these seed scales were conducted. Kinetic models showed that under ultrasonic conditions, the proanthocyanidins content reached 2.66 mg/g within 0.5 h. The optimal storage parameters include darkness, 4 °C, and pH 4. The degrees of polymerization of the mixture and the high- and low-polymer components were 4.89, 7.42 and 3.07, respectively, with the low-polymer component exhibiting the highest radical scavenging activity. Through HPLC-QE-MS/MS, 1H NMR, and FT-IR analyses, we identified proanthocyanidin B1, proanthocyanidin B2, (-)-epicatechin, and polymeric trimer esters. The Pinus koraiensis proanthocyanidins exhibited a high molecular weight, a complex internal molecular structure, and commendable stability, with crystallization requiring elevated temperatures. Therefore, the proanthocyanidins from Pinus koraiensis seed scales have emerged as highly promising novel natural antioxidants.
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  • 文章类型: Journal Article
    电力变压器的寿命,主要由其固体绝缘的条件决定,当矿物油是这些机器中的冷却剂时,在各种操作条件下是众所周知的。然而,有一种趋势是用可生物降解的液体代替这种油,尤其是酯类;因此,了解固体绝缘与这些流体的老化是至关重要的。目前可用的数据不允许在市场上可获得的酯中选择最佳酯,因为每一项研究都适用不同的条件,无法比较结果。因此,本文分析了以下五种最有前途的商业酯对牛皮纸和热升级牛皮纸的降解:向日葵,油菜籽,大豆,棕榈,和合成。材料在130、150和170°C下进行加速热老化,并通过其聚合度和降解动力学模型的获得来评估论文的完整性。在这项工作中研究了广泛的材料,接受了相同的治疗,允许比较酯,揭示了替代流体影响的显著差异。向日葵,油菜籽,大豆酯提供了最好的纸张保护,即,在150°C的测试中,牛皮纸的聚合度用这些液体降低了71%,与矿物油减少83%相比,用棕榈酯减少79%,和75%的减少与合成酯。此外,获得了不同的动力学模型来预测降解;结论是Emsley模型提供了最佳拟合。此外,发现一种类型的纸张的介电流体的行为不能外推,这只在广泛的研究中值得注意。
    The lifespan of an electrical transformer, primarily determined by the condition of its solid insulation, is well known under various operating conditions when mineral oil is the coolant in these machines. However, there is a trend toward replacing this oil with biodegradable fluids, especially esters; therefore, an understanding of the ageing of solid insulation with these fluids is essential. Currently available data do not allow for the selection of the best ester among those available on the market, as each study applies different conditions, making it impossible to compare results. Thus, this paper analyses the degradation of Kraft and Thermally Upgraded Kraft papers with the following five most promising commercial esters: sunflower, rapeseed, soybean, palm, and synthetic. The materials underwent accelerated thermal ageing at 130, 150, and 170 °C, and the integrity of the papers was evaluated through their polymerisation degree and the obtaining of the degradation kinetic models. The wide range of materials studied in this work, which were subjected to the same treatments, allows for a comparison of the esters, revealing significant differences in the impact of the alternative fluids. Sunflower, rapeseed, and soybean esters provided the best paper protection, i.e., the degree of polymerisation of Kraft paper in the tests at 150 °C decreased by 71% with these fluids, compared to the 83% reduction with mineral oil, 79% reduction with palm ester, and 75% reduction with synthetic ester. Furthermore, different kinetic models were obtained to predict the degradation; it was concluded that the Emsley model provides the best fit. Additionally, it was found that the behaviour of a dielectric fluid with one type of paper cannot be extrapolated, which is only noticeable in broad-scope studies.
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  • 文章类型: Journal Article
    了解纳米颗粒(NPs)穿过细胞质膜后的降解在药物递送设计和细胞毒性评估中至关重要。然而,由于缺乏定量模型,控制可降解动力学的关键因素仍不清楚。在这项研究中,银纳米粒子(AgNPs)的亚细胞成像用于确定AgNPs的细胞内转移,单粒子ICP-MS用于跟踪降解过程。随后开发了细胞动力学模型来描述摄取,转让,和AgNPs的降解行为。我们的模型表明,AgNPs的细胞内降解效率远高于通过模拟测试确定的效率,NPs的降解受细胞因子的影响很大。具体来说,Ca或Zn的缺乏主要降低了NPs的动力学溶解,而钙缺乏也导致NP转移的延迟。强烈揭示了这些动力学参数的生物学意义。我们的模型表明,大多数内化的AgNPs溶解,产生的离子被迅速净化。Ag离子的释放在很大程度上取决于微泡介导的途径。通过改变AgNPs的涂层和尺寸,模型结果表明,尺寸影响了NPs向降解过程的转移,而涂层影响降解动力学。总的来说,我们开发的模型为理解和预测NPs的物理化学性质和周围环境对纳米毒性和治疗效果的影响提供了有价值的工具.
    Understanding the degradation of nanoparticles (NPs) after crossing the cell plasma membrane is crucial in drug delivery designs and cytotoxicity assessment. However, the key factors controlling the degradable kinetics remain unclear due to the absence of a quantification model. In this study, subcellular imaging of silver nanoparticles (AgNPs) was used to determine the intracellular transfer of AgNPs, and single particle ICP-MS was utilized to track the degradation process. A cellular kinetic model was subsequently developed to describe the uptake, transfer, and degradation behaviors of AgNPs. Our model demonstrated that the intracellular degradation efficiency of AgNPs was much higher than that determined by mimicking testing, and the degradation of NPs was highly influenced by cellular factors. Specifically, deficiencies in Ca or Zn primarily decreased the kinetic dissolution of NPs, while a Ca deficiency also resulted in the retardation of NP transfer. The biological significance of these kinetic parameters was strongly revealed. Our model indicated that the majority of internalized AgNPs dissolved, with the resulting ions being rapidly depurated. The release of Ag ions was largely dependent on the microvesicle-mediated route. By changing the coating and size of AgNPs, the model results suggested that size influenced the transfer of NPs into the degradation process, whereas coating affected the degradation kinetics. Overall, our developed model provides a valuable tool for understanding and predicting the impacts of the physicochemical properties of NPs and the ambient environment on nanotoxicity and therapeutic efficacy.
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  • 文章类型: Journal Article
    源自全球广泛使用的外源性生物的环境危害的风险评估(例如,制药,双酚,或防腐剂)需要对它们的作用进行综合研究,移动性,耗散机制,以及后续转化产品的识别和评估。我们已经开发了一种有效的加速溶剂萃取方法,用于土壤中各种理化性质可变的微污染物,以实现更准确的危害表征。从冻干土壤中回收的微污染物回收率为60-120%,除了阿托伐他汀,非索非那定,还有替米沙坦,回收率降低(40-66%)。观察到的基质效应范围为-26%至17%,并通过基质匹配标准进行了校正,以进行定量分析。该方法可以灵敏可靠地测定土壤样品中的各种分析物,因此,具有可变物理化学性质的转化产物(TP)的定性分析。我们确定了五种化合物的TP(文拉法辛,替米沙坦,缬沙坦,阿托伐他汀,和舍曲林)通过应用可疑和非针对性数据分析。据我们所知,首次报道了阿托伐他汀的转化产物。所有其他都在土壤或其他基质中发现。缬沙坦(形成缬沙坦酸)和阿托伐他汀(可能通过β的氧化脱羧转化,δ二羟基庚酸链到丙酸)的程度相对较大。鉴定的所有其他化合物仅是羟基化的(舍曲林和替米沙坦)或去甲基化的(文拉法辛)。我们基于构建的时间趋势以及TP形成和降解速率之间的比率来估计所鉴定的TP的稳定性和存在。我们证明了非目标方法对于复杂评估土壤污染物的命运和影响的价值。
    Risk assessment of environmental hazards originating from xenobiotics extensively used worldwide (e.g., pharmaceuticals, bisphenols, or preservatives) requires a combined study of their effects, mobility, dissipation mechanisms, and subsequent transformation product identification and evaluation. We have developed an efficient accelerated solvent extraction method for a broad range of micropollutants of variable physical-chemical properties in soils to enable more accurate hazard characterisation. Micropollutant recoveries from freeze-dried soils were 60-120%, with the exception of atorvastatin, fexofenadine, and telmisartan, which had reduced recoveries (40-66%). The observed matrix effect ranged from -26% to 17% and was corrected by the matrix matching standard for quantitative analysis. The method allows sensitive and reliable determination of a wide range of analytes in soil samples and, consequently, qualitative analysis of transformation products (TP) with variable physicochemical properties. We identified TPs of five compounds (venlafaxine, telmisartan, valsartan, atorvastatin, and sertraline) by applying suspect and non-targeted data analyses. To our knowledge, the transformation product of atorvastatin was reported for the first time. All others were found in soil or other matrices. Valsartan (formed valsartan acid) and atorvastatin (transformed probably by oxidative decarboxylation of beta, delta dihydroxy heptanoic acid chain to propionic acid) were modified to a relatively large extent. All other compounds identified were only hydroxylated (sertraline and telmisartan) or demethylated (venlafaxine). We estimated the stability and presence of the identified TPs based on the constructed time trends and the ratio between TP formation and degradation rates. We demonstrated how valuable a non-targeted approach can be for complex evaluation of the fate and effect of soil pollutants.
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  • 文章类型: Editorial
    计算生物学是一个多元化的研究领域,在过去的二十年中变得越来越重要。广义上,它旨在应用计算方法来提高我们对生物系统的理解。这可以发生在多个层面,例如,通过创建特定生物系统的计算模型,通过开发有助于分析实验数据的算法,或通过建模研究基本的生物设计原则。本期特刊中的文章强调并回顾了计算生物学的四种不同应用。
    Computational biology is a diverse research field that has gained increasing importance over the last two decades. Broadly, it aims to apply computational approaches to advance our understanding of biological systems. This can take place on multiple levels, for example, by creating computational models of specific biological systems, by developing algorithms that assist in the analysis of experimental data, or by investigating fundamental biological design principles through modelling. The articles in this special issue highlight and review four such distinct applications of computational biology.
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  • 文章类型: Journal Article
    反应动力学的研究是商业工艺设计中最关键的方面之一。目前的研究调查了使用钙钛矿催化剂的费托合成动力学。通过热溶胶-凝胶技术制备了LaFe0.7Co0.3O3钙钛矿催化剂,并使用BET进行了表征,XRD,SEM,和H2-TPR技术。根据操作条件(例如H2/CO:1-2,压力:10-20barg,温度:240-300°C,和GHSV:30001/h),在固定床反应器中进行了费-托反应动力学(CO转化)。使用Langmuir-Hinshelwood-Hougen-Watson(LHHW)理论的框架,得出了18个CO转化的动力学表达式,并逐一拟合实验数据,确定最佳条件。相关性来自实验数据,并使用LHHW形式进行了很好的拟合(根据烯醇机制,一氧化碳和解离的氢原子在催化剂表面吸附并反应)-rCO=kpbCOPCO(bH2PH2)0.5/(1+bCOPCO+(bH2PH2)0.5)2。最后,在各种操作条件下,根据Arrhenius方程确定了最佳动力学模型的活化能。钙钛矿催化剂的活化能在240-300°C的温度下约为106.25kJ/mol,压力10-20barg,和H2/CO比1-2,其低于其他类型的催化剂。因此,催化剂在高温下活化,表现出稳定的性能,没有任何温度失控和焦化问题。
    The investigation of the reaction\'s kinetics is one of the most crucial aspects of the design of a commercial process. The current research investigates the kinetics of Fischer-Tropsch synthesis using a perovskite catalyst. The LaFe0.7 Co0.3 O3 perovskite catalyst was prepared via the thermal sol-gel technique and characterized using BET, XRD, SEM, and H2-TPR techniques. According to operating conditions (e.g. H2/CO: 1-2, pressure: 10-20 barg, temperature: 240-300 °C, and GHSV: 3000 1/h), Fischer-Tropsch reaction kinetics (CO conversion) were carried out in a fixed-bed reactor. Using the framework of Langmuir-Hinshelwood-Hougen-Watson (LHHW) theories, 18 kinetic expressions for CO conversion were derived, and all were fitted to experimental data one by one to determine the optimum condition. The correlation was derived from experimental data and well-fitted using LHHW form (according to the enol mechanism, carbon monoxide and dissociated hydrogen atoms are adsorbed and reacted on the surface of the catalyst) -rCO = kpbCOPCO(bH2PH2)0.5/(1 + bCOPCO + (bH2PH2)0.5)2. Finally, the activation energy of the optimum kinetic model was determined with respect to the Arrhenius equation under various operating conditions. The activation energy of perovskite catalyst is about 106.25 kJ/mol at temperatures 240-300 °C, pressures 10-20 barg, and H2/CO ratios 1-2, which is lower than other types of catalyst. Therefore, the catalyst was activated at a high temperature and demonstrated stable performance without any temperature runaway and coking issues.
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  • 文章类型: Journal Article
    为了实现协同消除汽车移动来源的N2O和强效温室污染物的碳,建立了基于密度泛函理论的化学动力学模型,以准确跟踪碳催化N2O还原的非均相过程,用实验数据验证模型的可靠性。碳结构的影响,站点密度,在该系统中可以分析N2O催化还原的表面化学性质。结果表明,碳的自由边缘位点准确地描述了N2O的催化还原过程。O-down中N2O对碳边缘的吸附,N-down,或平行取向表现出具有能量屏障的放热过程。由于单一碳位点施加的限制,具有O向下还原途径的N2O占主导地位。随着碳边缘活性碳原子数量的增加,N2O反应模式倾向于平行和N-down途径,导致N2O转化率的显着提高和催化温度的降低,可达到的最低温度为300K。此外,与单线态碳结构相比,三重态碳结构在N2O催化还原中表现出更高的效率,在柴油发动机的典型温度排气窗口内实现了93.8%的显着N2O转化率。这项研究为碳材料作为催化剂以低成本实现高N2O转化率提供了突破,这对于协同催化消除N2O和炭黑污染物具有重要意义。
    To achieve the collaborative elimination of N2O and carbon of potent greenhouse pollutants from automotive mobile sources, a chemical kinetic model is developed to accurately track the heterogeneous process of carbon-catalyzed N2O reduction based on density functional theory, with experimental data used to validate the model\'s reliability. The influence of carbon structure, site density, and surface chemical properties on N2O catalytic reduction can be analyzed within this system. Results reveal that the free-edge site of carbon accurately describes the catalytic reduction process of N2O. Adsorption of N2O to carbon edges in O-down, N-down, or parallel orientations exhibits an exothermic process with energy barriers. The N2O with O-down reduction pathway predominates due to the limitations imposed by the unitary carbon site. As the number of active carbon atoms at carbon edges increases, the N2O reaction mode tends towards parallel and N-down pathways, resulting in a significant enhancement of N2O conversion rates and a reduction in catalytic temperatures, with the lowest achievable temperature being 300 K. Furthermore, the triplet carbon structure exhibits higher efficiency in N2O catalytic reduction compared to the singlet carbon structure, achieving a remarkable N2O conversion rate of 93.8 % within the typical temperature exhaust window of diesel engines. This study supplies a breakthrough for carbon materials as catalysts for achieving high N2O conversion rates at low cost, which is important for the collaborative catalytic elimination of N2O and carbon black pollutants.
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  • 文章类型: Journal Article
    提出了2,3,3,3-四氟丙烯(HFO-1234yf)高温氧化和燃烧的动力学模型。它与GRI-Mech-3.0模型相结合,先前开发的2-溴-3,3,3-三氟丙烯(2-BTP)模型,和NISTC1-C2氢氟碳模型。该模型包括909个反应和101个物种。燃烧平衡计算表明,在标准条件下,HFO-1234yf在空气中的体积分数为0.083的最大燃烧温度为2076K(298K,0.101MPa)。在2,3,3,3-四氟丙烯与富氧空气的混合物中火焰传播的建模表明,计算的最大燃烧速度在约%的范围内相当好地再现了实验观察到的最大燃烧速度。然而,与实验结果显示最大燃烧速度转移到HFO-1234yf的富混合物相比,在贫混合物中观察到计算的最大值。
    A kinetic model for 2,3,3,3-tetrafluoropropene (HFO-1234yf) high temperature oxidation and combustion is proposed. It is combined with the GRI-Mech-3.0 model, the previously developed model for 2-bromo-3,3,3-trifluoropropene (2-BTP), and the NIST C1-C2 hydrofluorocarbon model. The model includes 909 reactions and 101 species. Combustion equilibrium calculations indicate a maximum combustion temperature of 2076 K for an HFO-1234yf volume fraction of 0.083 in air for standard conditions (298 K, 0.101 MPa). Modeling of flame propagation in mixtures of 2,3,3,3-tetrafluoropropene with oxygen-enriched air demonstrates that the calculated maximum burning velocity reproduces the experimentally observed maximum burning velocity within about %reasonably well. However, the calculated maximum is observed in lean mixtures in contrast to the experimental results showing the maximum burning velocity shifted to the rich mixtures of HFO-1234yf.
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  • 文章类型: Journal Article
    提出了含钾化合物碳酸氢钾抑制的动力学模型。该模型基于先前有关二次闪光抑制动力学研究的工作,碱金属的抑制作用以及生物质燃烧过程中硫酸盐和氯化物的排放。动力学模型包括与以下气相含钾物质的反应:K,KO,KO2,KO3,KH,KOH,KOHK2O,K2O2、(KOH)2、K2CO3、KHCO3和KCO3。火焰平衡计算表明,燃烧产物中的主要含钾物质是K和KOH。主要的抑制反应,其中包含的自由基终止抑制周期是KOH+H=K+H2O和K+OH+M=KOH+M,总终止效果为:H+OH=H2O。添加了KHCO3的化学计量甲烷/空气火焰的数值预测燃烧速度与可用的实验数据显示出合理的一致性。对于钾化合物观察到强烈的饱和效应:需要约0.1%体积分数的KHCO3以将燃烧速度降低2倍,然而需要额外的0.6%体积分数以达到5cm/s的燃烧速度。对计算结果的分析表明,钾化合物的加入迅速降低了自由基超平衡下降到平衡水平,因此进一步添加钾化合物对火焰自由基的影响很小。
    A kinetic model of inhibition by the potassium-containing compound potassium bicarbonate is suggested. The model is based on the previous work concerning kinetic studies of suppression of secondary flashes, inhibition by alkali metals and the emission of sulfates and chlorides during biomass combustion. The kinetic model includes reactions with the following gas-phase potassium-containing species: K, KO, KO2, KO3, KH, KOH, K2O, K2O2, (KOH)2, K2CO3, KHCO3 and KCO3. Flame equilibrium calculations demonstrate that the main potassiumcontaining species in the combustion products are K and KOH. The main inhibition reactions, which comprise the radical termination inhibition cycle are KOH+H=K+H2O and K+OH+M=KOH+M with the overall termination effect: H+OH=H2O. Numerically predicted burning velocities for stoichiometric methane/air flames with added KHCO3 demonstrate reasonable agreement with available experimental data. A strong saturation effect is observed for potassium compounds: approximately 0.1% volume fraction of KHCO3 is required to decrease burning velocity by a factor of 2, however an additional 0.6% volume fraction is required to reach a burning velocity of 5 cm/s. Analysis of the calculation results indicates that addition of the potassium compound quickly reduces the radical super-equilibrium down to equilibrium levels, so that further addition of the potassium compound has little effect on the flame radicals.
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