Genetic Algorithms

遗传算法
  • 文章类型: Journal Article
    气体传感器的一个挑战是湿度干扰,由于动态湿度条件可能导致对分析物的响应信号发生不可预测的波动,增加定量检测误差。这里,我们介绍一个概念:从水池中选择湿度传感器来补偿每个气体传感器的湿度信号。与极端抑制湿度响应的传统方法相比,传感器池允许更准确的气体定量在更广泛的应用场景提供定制,高维湿度响应数据作为外在补偿。作为一个概念证明,通过三个步骤实现了比色气体定量中湿度干扰的缓解。首先,跨越十维变量空间,一个算法驱动的高通量实验机器人发现了多个局部最佳区域,在这些区域中,比色湿度传感公式对灵敏度具有很高的评价,可逆性,响应时间,和在室温(25°C)下10-90%相对湿度(RH)的颜色变化程度。第二,从局部最优区域,选择具有不同变量的91种传感配方来构建母体比色湿度传感器阵列作为湿度信号补偿的传感器池。第三,准最佳传感器子阵列被确定为定制的湿度信号补偿解决方案,适用于大约全动态湿度范围(10-90%RH)的不同气体传感场景,使用巧妙的组合优化策略,并获得了两个准确的定量检测:一个平均绝对百分比误差(MAPE)从4.4%降低到0.75%,另一个从5.48%降低到1.37%。此外,父传感器阵列出色的湿度选择性已针对10种气体进行了验证。这项工作证明了机器人辅助构建可定制的父比色传感器阵列以减轻气体定量中的湿度干扰的可行性和优越性。
    One challenge for gas sensors is humidity interference, as dynamic humidity conditions can cause unpredictable fluctuations in the response signal to analytes, increasing quantitative detection errors. Here, we introduce a concept: Select humidity sensors from a pool to compensate for the humidity signal for each gas sensor. In contrast to traditional methods that extremely suppress the humidity response, the sensor pool allows for more accurate gas quantification across a broader range of application scenarios by supplying customized, high-dimensional humidity response data as extrinsic compensation. As a proof-of-concept, mitigation of humidity interference in colorimetric gas quantification was achieved in three steps. First, across a ten-dimensional variable space, an algorithm-driven high-throughput experimental robot discovered multiple local optimum regions where colorimetric humidity sensing formulations exhibited high evaluations on sensitivity, reversibility, response time, and color change extent for 10-90% relative humidity (RH) in room temperature (25 °C). Second, from the local optimum regions, 91 sensing formulations with diverse variables were selected to construct a parent colorimetric humidity sensor array as the sensor pool for humidity signal compensation. Third, the quasi-optimal sensor subarrays were identified as customized humidity signal compensation solutions for different gas sensing scenarios across an approximately full dynamic range of humidity (10-90% RH) using an ingenious combination optimization strategy, and two accurate quantitative detections were attained: one with a mean absolute percentage error (MAPE) reduction from 4.4 to 0.75% and the other from 5.48 to 1.37%. Moreover, the parent sensor array\'s excellent humidity selectivity was validated against 10 gases. This work demonstrates the feasibility and superiority of robot-assisted construction of a customizable parent colorimetric sensor array to mitigate humidity interference in gas quantification.
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  • 文章类型: Journal Article
    对接方法可用于使用多种算法来预测两个或更多个分子相对于彼此的取向。它可以基于相互作用的物理原理,也可以使用来自数据库和模板的信息。这些方法的可用性取决于分子的类型和大小,将估计其相对方向。两个最重要的限制是(i)预测的计算成本和(ii)相似复合物的结构信息的可用性。总的来说,如果有足够的类似系统的信息,基于知识和基于模板的方法可以显着降低计算成本,同时提供高精度的预测。然而,如果有关系统拓扑及其合作伙伴之间的交互的信息很少,基于物理的方法更可靠,甚至是唯一的选择。在这一章中,知识-,模板-,和基于物理的方法将进行比较和简要讨论,提供其可用性的例子,特别强调基于物理的蛋白质,蛋白质,蛋白质肽,和UNRES粗粒模型中的蛋白质-富勒烯对接。
    Docking methods can be used to predict the orientations of two or more molecules with respect of each other using a plethora of various algorithms, which can be based on the physics of interactions or can use information from databases and templates. The usability of these approaches depends on the type and size of the molecules, whose relative orientation will be estimated. The two most important limitations are (i) the computational cost of the prediction and (ii) the availability of the structural information for similar complexes. In general, if there is enough information about similar systems, knowledge-based and template-based methods can significantly reduce the computational cost while providing high accuracy of the prediction. However, if the information about the system topology and interactions between its partners is scarce, physics-based methods are more reliable or even the only choice. In this chapter, knowledge-, template-, and physics-based methods will be compared and briefly discussed providing examples of their usability with a special emphasis on physics-based protein-protein, protein-peptide, and protein-fullerene docking in the UNRES coarse-grained model.
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  • 文章类型: Journal Article
    这项研究的目的是介绍一种通过将功能近红外光谱(fNIRS)研究分类为PD阳性或阴性来辅助诊断帕金森病(PD)的方法。fNIRS是一种非侵入性的光学信号模式,传达大脑的血液动力学反应,特别是大脑皮层中血氧合的变化;它作为辅助PD检测的工具的潜力值得探索,因为与其他神经影像学方法相比,它是非侵入性的且具有成本效益。除了fNIRS和机器学习的集成,这项工作的一个贡献是实现和测试了各种方法,以找到实现最高性能的实现。所有实现都使用逻辑回归模型进行分类。从每个参与者的fNIRS研究中提取了一组792个时间和光谱特征。在两个性能最好的实现中,使用特征排序技术的集合来选择减少的特征子集,随后用遗传算法将其缩小。实现最佳检测性能,我们的方法达到了100%的准确度,精度,和回忆,F1评分和曲线下面积(AUC)为1,使用14个特征。这大大促进了PD诊断,强调整合fNIRS和机器学习用于非侵入性PD检测的潜力。
    The purpose of this research is to introduce an approach to assist the diagnosis of Parkinson\'s disease (PD) by classifying functional near-infrared spectroscopy (fNIRS) studies as PD positive or negative. fNIRS is a non-invasive optical signal modality that conveys the brain\'s hemodynamic response, specifically changes in blood oxygenation in the cerebral cortex; and its potential as a tool to assist PD detection deserves to be explored since it is non-invasive and cost-effective as opposed to other neuroimaging modalities. Besides the integration of fNIRS and machine learning, a contribution of this work is that various approaches were implemented and tested to find the implementation that achieves the highest performance. All the implementations used a logistic regression model for classification. A set of 792 temporal and spectral features were extracted from each participant\'s fNIRS study. In the two best performing implementations, an ensemble of feature-ranking techniques was used to select a reduced feature subset, which was subsequently reduced with a genetic algorithm. Achieving optimal detection performance, our approach reached 100 % accuracy, precision, and recall, with an F1 score and area under the curve (AUC) of 1, using 14 features. This significantly advances PD diagnosis, highlighting the potential of integrating fNIRS and machine learning for non-invasive PD detection.
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  • 文章类型: Journal Article
    纳米结构脂质载体(NLC)由于其小尺寸和有效的药物装载能力而具有作为药物递送系统(DDS)的重要前景。NLC的表面功能化可以促进与特定细胞受体的相互作用,实现靶向细胞递送。甘露糖基化已成为增加纳米颗粒被巨噬细胞识别和内化能力的有价值的工具。然而,功能化NLC的设计和开发是一项复杂的任务,需要优化众多变量和步骤,使过程具有挑战性和耗时。此外,以前的研究没有集中在评估功能化效率。在这项工作中,混合人工智能技术被用来帮助设计载有甘露糖基化药物的NLC。结合模糊逻辑或遗传算法的人工神经网络用于理解颗粒形成过程并优化功能化过程中不同步骤的变量组合。甘露糖经过化学修饰,第一次,功能化效率的量化和优化。所提出的顺序方法使设计一个强大的程序,以获得稳定的甘露糖基化NLCs具有均匀的粒度分布,小粒径(<100nm),和相当大的正ζ电位(>20mV)。在建立的方案之后,在这些DDS的表面上掺入甘露糖实现>85%的官能化效率。这种高有效性应该增强巨噬细胞对NLC的识别和内化,从而促进慢性炎性疾病的治疗。
    Nanostructured lipid carriers (NLCs) hold significant promise as drug delivery systems (DDS) owing to their small size and efficient drug-loading capabilities. Surface functionalization of NLCs can facilitate interaction with specific cell receptors, enabling targeted cell delivery. Mannosylation has emerged as a valuable tool for increasing the ability of nanoparticles to be recognized and internalized by macrophages. Nevertheless, the design and development of functionalized NLC is a complex task that entails the optimization of numerous variables and steps, making the process challenging and time-consuming. Moreover, no previous studies have been focused on evaluating the functionalization efficiency. In this work, hybrid Artificial Intelligence technologies are used to help in the design of mannosylated drug loaded NLCs. Artificial neural networks combined with fuzzy logic or genetic algorithms were employed to understand the particle formation processes and optimize the combinations of variables for the different steps in the functionalization process. Mannose was chemically modified to allow, for the first time, functionalization efficiency quantification and optimization. The proposed sequential methodology has enabled the design of a robust procedure for obtaining stable mannosylated NLCs with a uniform particle size distribution, small particle size (< 100 nm), and a substantial positive zeta potential (> 20mV). The incorporation of mannose on the surfaces of these DDS following the established protocols achieved > 85% of functionalization efficiency. This high effectiveness should enhance NLC recognition and internalization by macrophages, thereby facilitating the treatment of chronic inflammatory diseases.
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  • 文章类型: Journal Article
    在这篇文章中,研究了与导波测量相关的实际问题:(1)PZT板执行器(NAC2013)胶合对产生的弹性波传播的影响,(2)PZT传感器附件的可重复性,和(3)评估比较对不同2D样品进行的激光多普勒振动测量(LDV)测量结果的可能性。在评估将导波现象应用于结构健康监测系统的可能性的背景下,考虑这些问题至关重要,例如,在土木工程中。在考试中,在钢I形截面试样的腹板上进行了实验室测试。标本的尺寸和形状的发展方式,使它们类似于土木工程结构中通常使用的元素。事实证明,当使用蜡粘合激发器时,所产生的波的振幅最高。这种连接类型的可重复性和耐久性是最弱的。由于这个原因,它不适合在实验室外实际使用。永久涂胶在激励器和试样之间提供了稳定的连接,但产生的信号振幅最低。在论文中,提出了一种致力于客观分析和比较在不同样品表面传播的弹性波的新方法。在这个过程中,遗传算法有助于确定新的坐标系,其中可以评估不同方向的波传播质量。
    In this article, the practical issues connected with guided wave measurement are studied: (1) the influence of gluing of PZT plate actuators (NAC2013) on generated elastic wave propagation, (2) the repeatability of PZT transducers attachment, and (3) the assessment of the possibility of comparing the results of Laser Doppler Vibrometry (LDV) measurement performed on different 2D samples. The consideration of these questions is crucial in the context of the assessment of the possibility of the application of the guided wave phenomenon to structural health-monitoring systems, e.g., in civil engineering. In the examination, laboratory tests on the web of steel I-section specimens were conducted. The size and shape of the specimens were developed in such a way that they were similar to the elements typically used in civil engineering structures. It was proved that the highest amplitude of the generated wave was obtained when the exciters were glued using wax. The repeatability and durability of this connection type were the weakest. Due to this reason, it was not suitable for practical use outside the laboratory. The permanent glue application gave a stable connection between the exciter and the specimen, but the generated signal had the lowest amplitude. In the paper, the new procedure dedicated to objective analysis and comparison of the elastic waves propagating on the surface of different specimens was proposed. In this procedure, the genetic algorithms help with the determination of a new coordinate system, in which the assessment of the quality of wave propagation in different directions is possible.
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  • 文章类型: Journal Article
    基于生理的动力学(PBK)模型广泛用于药理学和毒理学,用于预测暴露后物质的内部配置。自愿或不。由于其复杂性,需要估计大量的模型参数,要么通过硅片工具,体外实验或通过将模型拟合到体内数据。在后一种情况下,在体内数据上拟合复杂的结构模型可能导致过度参数化并产生不切实际的参数估计。为了解决这些问题,我们提出了一种新的参数分组方法,通过共同估计跨隔室的参数组来减少参数空间。参数分组使用遗传算法进行,并且是完全自动化的,基于一种新颖的拟合优度度量。为了说明拟议方法的实际应用,进行了两个案例研究。第一个案例研究展示了一种新的PBK模型的开发,而第二个侧重于模型细化。在第一个案例研究中,建立了PBK模型,以阐明静脉注射后大鼠中二氧化钛(TiO2)纳米颗粒的生物分布。采用了多种参数估计方案。基于拟合优度指标的比较分析表明,所提出的方法产生的模型优于标准估计方法,同时使用减少数量的参数。在第二个案例研究中,现有的大鼠全氟辛酸(PFOA)PBK模型扩展到纳入其他组织,为PFOA生物分布提供了更全面的描述。两种模型均通过独立的体内研究进行验证,以确保其可靠性。
    Physiologically based kinetic (PBK) models are widely used in pharmacology and toxicology for predicting the internal disposition of substances upon exposure, voluntarily or not. Due to their complexity, a large number of model parameters need to be estimated, either through in silico tools, in vitro experiments, or by fitting the model to in vivo data. In the latter case, fitting complex structural models on in vivo data can result in overparameterization and produce unrealistic parameter estimates. To address these issues, we propose a novel parameter grouping approach, which reduces the parametric space by co-estimating groups of parameters across compartments. Grouping of parameters is performed using genetic algorithms and is fully automated, based on a novel goodness-of-fit metric. To illustrate the practical application of the proposed methodology, two case studies were conducted. The first case study demonstrates the development of a new PBK model, while the second focuses on model refinement. In the first case study, a PBK model was developed to elucidate the biodistribution of titanium dioxide (TiO2) nanoparticles in rats following intravenous injection. A variety of parameter estimation schemes were employed. Comparative analysis based on goodness-of-fit metrics demonstrated that the proposed methodology yields models that outperform standard estimation approaches, while utilizing a reduced number of parameters. In the second case study, an existing PBK model for perfluorooctanoic acid (PFOA) in rats was extended to incorporate additional tissues, providing a more comprehensive portrayal of PFOA biodistribution. Both models were validated through independent in vivo studies to ensure their reliability.
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  • 文章类型: Journal Article
    天线的精确放置对于确保有效覆盖至关重要,服务质量,和无线通信中的网络容量,特别是考虑到移动连接的指数增长。天线定位问题(APP)已经从理论方法发展到采用先进算法的实际解决方案,比如进化算法。这项研究的重点是开发创新的网络工具,利用遗传算法优化天线定位,从传播损耗计算开始。为了实现这一点,回顾了七个经验模型,并将其集成到天线定位网工具中。结果表明,以最少的配置和仔细的型号选择,详细分析天线定位在任何区域都是可行的。该工具是使用Java17和TypeScript5.1.6开发的,利用JMetal框架应用遗传算法,并具有基于React的Web界面,可促进应用程序集成。为了将来的研究,考虑实现能够根据特定区域选择分析环境的服务器,从而提高天线定位分析的准确性和客观性。
    The precise placement of antennas is essential to ensure effective coverage, service quality, and network capacity in wireless communications, particularly given the exponential growth of mobile connectivity. The antenna positioning problem (APP) has evolved from theoretical approaches to practical solutions employing advanced algorithms, such as evolutionary algorithms. This study focuses on developing innovative web tools harnessing genetic algorithms to optimize antenna positioning, starting from propagation loss calculations. To achieve this, seven empirical models were reviewed and integrated into an antenna positioning web tool. Results demonstrate that, with minimal configuration and careful model selection, a detailed analysis of antenna positioning in any area is feasible. The tool was developed using Java 17 and TypeScript 5.1.6, utilizing the JMetal framework to apply genetic algorithms, and features a React-based web interface facilitating application integration. For future research, consideration is given to implementing a server capable of analyzing the environment based on specific area selection, thereby enhancing the precision and objectivity of antenna positioning analysis.
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  • 文章类型: Journal Article
    本研究探讨了基于元启发式的特征选择在提高诊断肌肉减少症的机器学习性能方面的功效。在将机器学习应用于肌肉减少症诊断时,显着影响诊断效能的特征的提取和利用成为关键方面。使用第八届韩国衰老纵向研究(KLoSA)的数据,这项研究检查了和声搜索(HS)和遗传算法(GA)的特征选择。对结果特征集的评估涉及决策树,随机森林,支持向量机,和幼稚的贝叶斯算法。因此,用支持向量机训练的HS衍生特征集的准确度为0.785,加权F1得分为0.782,优于传统方法.这些发现强调了基于元启发式的选择的竞争优势,证明其在推进肌少症诊断方面的潜力。本研究主张进一步探索基于元启发式的特征选择在未来的肌少症研究中的关键作用。
    This study explores the efficacy of metaheuristic-based feature selection in improving machine learning performance for diagnosing sarcopenia. Extraction and utilization of features significantly impacting diagnosis efficacy emerge as a critical facet when applying machine learning for sarcopenia diagnosis. Using data from the 8th Korean Longitudinal Study on Aging (KLoSA), this study examines harmony search (HS) and the genetic algorithm (GA) for feature selection. Evaluation of the resulting feature set involves a decision tree, a random forest, a support vector machine, and naïve bayes algorithms. As a result, the HS-derived feature set trained with a support vector machine yielded an accuracy of 0.785 and a weighted F1 score of 0.782, which outperformed traditional methods. These findings underscore the competitive edge of metaheuristic-based selection, demonstrating its potential in advancing sarcopenia diagnosis. This study advocates for further exploration of metaheuristic-based feature selection\'s pivotal role in future sarcopenia research.
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  • 文章类型: Journal Article
    本研究对遗传算法(GA)和XGBoost的组合进行了全面分析,一个著名的机器学习模型。主要重点在于智能电网应用中欺诈检测的超参数优化。实证结果表明,优化后模型的性能指标有了值得注意的提高,特别强调精度从0.82大幅提高到0.978。精度,召回,AUROC指标显示出明显的改善,表明优化XGBoost模型进行欺诈检测的有效性。我们的研究结果为扩展智能电网欺诈检测领域做出了重要贡献。这些结果强调了高级元启发式算法用于优化复杂机器学习模型的潜在用途。这项工作展示了在提高智能电网中欺诈检测系统的准确性和效率方面的重大进展。
    This study provides a comprehensive analysis of the combination of Genetic Algorithms (GA) and XGBoost, a well-known machine-learning model. The primary emphasis lies in hyperparameter optimization for fraud detection in smart grid applications. The empirical findings demonstrate a noteworthy enhancement in the model\'s performance metrics following optimization, particularly emphasizing a substantial increase in accuracy from 0.82 to 0.978. The precision, recall, and AUROC metrics demonstrate a clear improvement, indicating the effectiveness of optimizing the XGBoost model for fraud detection. The findings from our study significantly contribute to the expanding field of smart grid fraud detection. These results emphasize the potential uses of advanced metaheuristic algorithms to optimize complex machine-learning models. This work showcases significant progress in enhancing the accuracy and efficiency of fraud detection systems in smart grids.
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  • 文章类型: Journal Article
    诸如定向能量沉积之类的增材制造技术使用粉末作为原材料,它必须以精确和受控的方式存放。文丘里注射器可以是用于颗粒材料的高精度输送的解决方案。他们从不同的角度进行了研究,但它们总是处于高压条件下,主要靠重力喂养。在本研究中,例如,已经对制造文丘里注射器所需的与颗粒相关的不同尺寸参数进行了优化,以使能够在具有高输送精度的低压系统中被抽吸和输送以用于特定流的粉末的量最大化。对于这种优化,使用离散元方法对文丘里管的使用进行了模拟,根据实验的初步设计,通过遗传算法生成不同的变体。还进行了统计分析,以确定对目标最有影响力的设计变量,这些是吸入直径(D3),喉部直径(d2),和喷嘴直径(d1)。最佳尺寸关系如下:D3是颗粒直径的34倍,d2是粒径的26.5倍,d140%d2,收缩角α为18.73°,膨胀角β为8.28°。有了这些比例,与最初的尝试相比,粉末吸力提高了85%,最大2%的负载损失。
    Additive manufacturing technologies such as directed energy deposition use powder as their raw material, and it must be deposited in a precise and controlled manner. Venturi injectors could be a solution for the highly precise transport of particulate material. They have been studied from different perspectives, but they are always under high-pressure conditions and mostly fed by gravity. In the present study, an optimization of the different dimensional parameters needed for the manufacturing of a Venturi injector in relation to a particle has been carried out to maximize the amount of powder capable of being sucked and transported for a specific flow in a low-pressure system with high precision in transport. For this optimization, simulations of Venturi usage were performed using the discrete element method, generating different variations proposed by a genetic algorithm based on a preliminary design of experiments. Statistical analysis was also performed to determine the most influential design variables on the objective, with these being the suction diameter (D3), the throat diameter (d2), and the nozzle diameter (d1). The optimal dimensional relationships were as follows: a D3 34 times the particle diameter, a d2 26.5 times the particle diameter, a d1 40% the d2, a contraction angle alpha of 18.73°, and an expansion angle beta of 8.28°. With these proportions, an 85% improvement in powder suction compared to the initial attempts was achieved, with a maximum 2% loss of load.
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