Gene repetition events

  • 文章类型: Journal Article
    富含半胱氨酸的受体样激酶(CRKs)在植物发育过程中发挥着重要作用,包括生物和非生物胁迫下的防御反应,活性氧(ROS)稳态,call体沉积和程序性细胞死亡(PCD)。然而,关于CRK家族参与小麦(TriticumaestivumL.)热胁迫导致的雄性不育的研究很少。在这项研究中,对CRK家族进行了全基因组表征,以研究由热胁迫引起的花药不育中小麦CRK的结构和功能属性。共有95个CRK基因在18条染色体上分布不均,大多数基因分布在2B号染色体上。Ka/Ks比率小于1的同源同源基因可能在进化过程中经历了强烈的纯化选择,并且在功能上更加保守。CRK基因共线性分析结果表明,小麦和拟南芥(A.thaliana),谷草,短臂远齿(B.远速粒子),米饭有三个,12、15和11对直系同源基因,分别。此外,基因和miRNAs的网络相互作用结果表明,5个miRNAs位于相互作用图的中心,即tae-miR9657b-5p,tae-miR9780,tae-miR9676-5p,tae-miR164和tae-miR531.此外,6个TaCRK基因的qRT-PCR验证表明,它们在单核期花药的发育中起着关键作用,因为与正常花药相比,所有六个基因在热应激雄性不育单核期花药中均以极显著水平表达。根据花药表型的组合,我们假设TaCRK基因在高温诱导的小麦不育过程中具有重要意义,石蜡切片,和qRT-PCR数据。这些结果提高了我们对它们关系的理解。
    Cysteine-rich receptor-like kinases (CRKs) play many important roles during plant development, including defense responses under both biotic and abiotic stress, reactive oxygen species (ROS) homeostasis, callose deposition and programmed cell death (PCD). However, there are few studies on the involvement of the CRK family in male sterility due to heat stress in wheat (Triticum aestivum L.). In this study, a genome-wide characterization of the CRK family was performed to investigate the structural and functional attributes of the wheat CRKs in anther sterility caused by heat stress. A total of 95 CRK genes were unevenly distributed on 18 chromosomes, with the most genes distributed on chromosome 2B. Paralogous homologous genes with Ka/Ks ratios less than 1 may have undergone strong purifying selection during evolution and are more functionally conserved. The collinearity analysis results of CRK genes showed that wheat and Arabidopsis (A. thaliana), foxtail millet, Brachypodium distachyon (B. distachyon), and rice have three, 12, 15, and 11 pairs of orthologous genes, respectively. In addition, the results of the network interactions of genes and miRNAs showed that five miRNAs were in the hub of the interactions map, namely tae-miR9657b-5p, tae-miR9780, tae-miR9676-5p, tae-miR164, and tae-miR531. Furthermore, qRT-PCR validation of the six TaCRK genes showed that they play key roles in the development of the mononuclear stage anthers, as all six genes were expressed at highly significant levels in heat-stressed male sterile mononuclear stage anthers compared to normal anthers. We hypothesized that the TaCRK gene is significant in the process of high-temperature-induced sterility in wheat based on the combination of anther phenotypes, paraffin sections, and qRT-PCR data. These results improve our understanding of their relationship.
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  • 文章类型: Published Erratum
    [这更正了文章DOI:10.3389/fpls.202.1061472。].
    [This corrects the article DOI: 10.3389/fpls.2022.1061472.].
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  • 文章类型: Journal Article
    含蛋白(CDCPs)的半胱氨酸β合酶(CBS)结构域通过调节硫氧还蛋白系统在植物发育中发挥重要作用,以及它对生物和非生物胁迫条件的反应能力。尽管如此,没有系统的研究研究小麦CBS基因家族及其与高温诱导的雄性不育的关系。在这项研究中,在小麦基因组中鉴定出66个CBS家族成员,和他们的基因或蛋白质序列用于随后的分析。发现TaCBS基因家族在21条染色体上分布不均,根据基因结构和系统发育将其分为四个亚组。共线性分析结果表明,小麦之间共有25个同源基因,水稻和短枝,小麦之间有一个共有的直系同源基因,小米和大麦.TaCBS的顺式监管元素与JA有关,IAA,MYB,等。GO和KEGG通路分析确定这些TaCBS基因与授粉有关,繁殖,以及信号和细胞过程,分别。基于转录组数据的小麦植物热图显示,相对于其他组织,TaCBS基因在小穗中表达的程度更高。此外,鉴定了29个推定的tae-miRNAs,针对41个TaCBS基因。此外,qRT-PCR验证六个TaCBS基因表明它们在花药发育中的关键作用,因为其中五个在热应激雄性不育花药中的表达水平低于正常花药。连同花药表型,石蜡切片,淀粉碘化钾染色,和qRT-PCR数据,我们假设TaCBS基因与小麦的热应激不育过程有非常重要的联系,这些数据为进一步了解它们之间的关系提供了基础。
    Cystathionine beta synthase (CBS) domains containing proteins (CDCPs) plays an important role in plant development through regulation of the thioredoxin system, as well as its ability to respond to biotic and abiotic stress conditions. Despite this, no systematic study has examined the wheat CBS gene family and its relation to high temperature-induced male sterility. In this study, 66 CBS family members were identified in the wheat genome, and their gene or protein sequences were used for subsequent analysis. The TaCBS gene family was found to be unevenly distributed on 21 chromosomes, and they were classified into four subgroups according to their gene structure and phylogeny. The results of collinearity analysis showed that there were 25 shared orthologous genes between wheat, rice and Brachypodium distachyon, and one shared orthologous gene between wheat, millet and barley. The cis-regulatory elements of the TaCBS were related to JA, IAA, MYB, etc. GO and KEGG pathway analysis identified these TaCBS genes to be associated with pollination, reproduction, and signaling and cellular processes, respectively. A heatmap of wheat plants based on transcriptome data showed that TaCBS genes were expressed to a higher extent in spikelets relative to other tissues. In addition, 29 putative tae-miRNAs were identified, targeting 41 TaCBS genes. Moreover, qRT-PCR validation of six TaCBS genes indicated their critical role in anther development, as five of them were expressed at lower levels in heat-stressed male sterile anthers than in Normal anthers. Together with anther phenotypes, paraffin sections, starch potassium iodide staining, and qRT-PCR data, we hypothesized that the TaCBS gene has a very important connection with the heat-stressed sterility process in wheat, and these data provide a basis for further insight into their relationship.
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