EPR spectroscopy

EPR 光谱学
  • 文章类型: Journal Article
    连续波电子顺磁共振(cw-EPR)与电化学的结合非常有吸引力,因为它允许清洁的原位生成和随后的自由基离子光谱表征,它们是许多光催化循环以及生物系统或光电子器件中发生的光诱导过程中的重要中间体。虽然光谱电化学EPR的商业设置是可用的,它们通常很昂贵,并且适合特定的光谱设置。在这里,我们提出了一种低成本电化学EPR电池的设计,该电池可以与任何商业cw-EPR仪器结合使用。将电池设计与现有设置进行比较,并通过比较通过石墨烯片段的化学和电化学氧化获得的EPR光谱来评估电池的性能。
    The combination of continuous wave electron paramagnetic resonance (cw-EPR) with electrochemistry is highly attractive as it allows a clean in-situ generation and the subsequent spectroscopic characterisation of radical ions, which are important intermediates in many photocatalytic cycles as well as light-induced processes occurring in biological systems or optoelectronic devices. Although commercial setups for spectroelectrochemical EPR are available, they are often expensive and tailored to a particular spectroscopic setup.  Here we present a design for a low-cost electrochemical EPR cell that can be used in combination with any commercial cw-EPR instrumentation. The cell design is compared to existing setups and the performance of the cell is evaluated by comparison of EPR spectra obtained by chemical and electrochemical oxidation of a graphene fragment.
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  • 文章类型: Journal Article
    脉冲电子-电子双共振(PELDOR)光谱是确定核酸(NA)结构和构象动力学的有力方法。PELDOR分子动力学(MD)模拟为定义柔性,三维,NA的自组装复合物。了解这些复合物的多样性和结构对于揭示人体中的基质和调节性生物过程以及人为影响它们以达到治疗目的至关重要。为了探索PELDOR和MD模拟的可靠性,我们将氮氧化物自旋标记位点特异性地连接到寡核苷酸上,它们在NA链之间形成自组装复合物,并表现出显著的构象灵活性。由一对具有不同接头大小的寡核苷酸组装的DNA复合物在从PELDOR获得的距离分布与从MD模拟计算的距离分布之间显示出极好的一致性。对于平均自旋间距离和距离分布宽度。这些结果证明,MD模拟的PELDOR具有研究NA构象柔性复合物的结构和动力学的重要潜力。
    Pulsed electron-electron double resonance (PELDOR) spectroscopy is a powerful method for determining nucleic acid (NA) structure and conformational dynamics. PELDOR with molecular dynamics (MD) simulations opens up unique possibilities for defining the conformational ensembles of flexible, three-dimensional, self-assembled complexes of NA. Understanding the diversity and structure of these complexes is vital for uncovering matrix and regulative biological processes in the human body and artificially influencing them for therapeutic purposes. To explore the reliability of PELDOR and MD simulations, we site-specifically attached nitroxide spin labels to oligonucleotides, which form self-assembled complexes between NA chains and exhibit significant conformational flexibility. The DNA complexes assembled from a pair of oligonucleotides with different linker sizes showed excellent agreement between the distance distributions obtained from PELDOR and calculated from MD simulations, both for the mean inter-spin distance and the distance distribution width. These results prove that PELDOR with MD simulations has significant potential for studying the structure and dynamics of conformational flexible complexes of NA.
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  • 文章类型: Journal Article
    双自由基有机化合物的合成由于其可热的自旋反转和光电特性而引起了极大的关注。然而,制备这种具有高开壳行为的稳定结构仍然具有挑战性。在这里,我们报道了四个π扩展的合成和性质,具有高双自由基特性的稠合芴衍生物,利用分子设计,其中封闭壳不包括任何Clar六重奏,在相应的开壳状态下,最大为5。这导致了不寻常的开壳三重态基态,其出色的单重态-三重态能量差(ΔEST)为ca。19千卡/摩尔,迄今为止报道的全碳共轭支架的最高值之一。在分子的每个末端(在五元环上)掺入二硫富烯单元可提供扩展的四硫富烯(TTFs),从而对自由基阳离子进行可逆氧化和双自由基指示。本文提出的各种亲芳族结构显示出高度局部化的自旋密度和有限的共轭,这是由于芳香环中的限制π电子,如1HNMR所支持,UV-可见光,EPR光谱和DFT计算。
    The synthesis of diradical organic compounds has garnered significant attention due to their thermally accessible spin inversion and optoelectronic properties. Yet, preparing such stable structures with high open-shell behavior remains challenging. Herein, we report the synthesis and properties of four π-extended, fused fluorene derivatives with high diradical character, taking advantage of a molecular design where the closed-shell does not include any Clar sextet, comparatively to a maximum of 5 in the corresponding open-shell state. This led to an unusual open-shell triplet ground state with an outstanding singlet-triplet energy difference (ΔEST) of ca. 19 kcal/mol, one of the highest values reported to date for an all-carbon conjugated scaffold. Incorporation of dithiafulvene units at each end of the molecule (at the five-membered rings) furnishes extended tetrathiafulvalenes (TTFs) undergoing reversible oxidations to the radical cation and diradical dication. The various pro-aromatic structures presented herein show highly localized spin density and a limited conjugation due to the confined π-electrons in the aromatic cycles, as supported by 1H NMR, UV-visible, EPR spectroscopy and DFT calculations.
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  • 文章类型: Journal Article
    铜交换的omega沸石(Cu-omega)是通过氧气循环方法将甲烷选择性转化为甲醇(MtM)的有效材料。然而,其性能表现出很大的变化取决于操作条件。在等温温度制度下,Cu-omega在230°C以下表现出减弱的活性,但在290°C下的活性显着增加。在450°C下应用高温活化方案导致材料的快速失活。通过结合反应性研究来研究这种行为差异,中子和原位高分辨率反常X射线粉末衍射(HR-AXRPD),以及电子顺磁共振波谱,为了揭示铜在整个骨架中的迁移是这些行为的主要原因,这又受系统水合程度的控制。这项工作表明,对整个沸石骨架中Cu迁移的控制可以通过产生更多的MtM转化活性位点来显著增加Cu-ω的活性。这些结果强调了原位HR-AXRPD在反应条件下揭示材料行为的能力,并表明在更广泛的条件和循环方案中重新评估以前被认为对MtM转化无活性的Cu-沸石可能是必要的。
    Copper-exchanged zeolite omega (Cu-omega) is a potent material for the selective conversion of methane-to-methanol (MtM) via the oxygen looping approach. However, its performance exhibits substantial variation depending on the operational conditions. Under an isothermal temperature regime, Cu-omega demonstrates subdued activity below 230 °C, but experiences a remarkable increase in activity at 290 °C. Applying a high-temperature activation protocol at 450 °C causes a rapid deactivation of the material. This behavioral divergence is investigated by combining reactivity studies, neutron and in situ high-resolution anomalous X-ray powder diffraction (HR-AXRPD), as well as electron paramagnetic resonance spectroscopy, to reveal that the migration of Cu throughout the framework is the primary cause of these behaviors, which in turn is governed by the degree of hydration of the system. This work suggests that control over the Cu migration throughout the zeolite framework may be harnessed to significantly increase the activity of Cu-omega by generating more active sites for the MtM conversion. These results underscore the power of in situ HR-AXRPD for unraveling the behavior of materials under reaction conditions and suggest that a re-evaluation of Cu-zeolites priorly deemed inactive for the MtM conversion across a broader range of conditions and looping protocols may be warranted.
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  • 文章类型: Journal Article
    合成了由两个双螯合配体形成的具有[N2O2]配位的新型钴(II)基配合物,并通过多技术方法进行了表征。配合物具有易轴各向异性(D<0),磁测量显示磁场引起的磁化缓慢弛豫。自旋反转障碍,即,两个最低的Kramers双峰(UZFS)的分裂,已经通过THz-EPR光谱测量,这允许区分存在于复合物之一中的两个晶体学上独立的物种。基于这些实验UZFS能量以及文献中报道的相关复合物的能量,建立磁结构相关性是可能的。UZFS线性取决于(伪)四面体配位的伸长参数εT,由钴(II)离子处的平均钝角和锐角之间的比率给出,而发现UZFS实际上与螯合物平面的扭转角无关。随着与后者正交性的偏差越来越大,菱形(|E/D|)增加。
    New cobalt(II)-based complexes with [N2O2] coordination formed by two bis-chelate ligands were synthesized and characterized by a multi-technique approach. The complexes possess an easy-axis anisotropy (D < 0) and magnetic measurements show a field-induced slow relaxation of magnetization. The spin-reversal barriers, i.e., the splitting of the two lowest Kramers doublets (UZFS), have been measured by THz-EPR spectroscopy, which allows to distinguish the two crystallographically independent species present in one of the complexes. Based on these experimental UZFS energies together with those for related complexes reported in literature, it was possible to establish magneto-structural correlations. UZFS linearly depends on the elongation parameter εT of the (pseudo-)tetrahedral coordination, which is given by the ratio between the average obtuse and acute angles at the cobalt(II) ion, while UZFS was found to be virtually independent of the twist angle of the chelate planes. With increasing deviation from the orthogonality of the latter, the rhombicity (|E/D|) increases.
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  • 文章类型: Journal Article
    氧化应激是ROS介导的大分子损伤的主要来源,组织,和整个身体。它是严重病理状况的重要标志。生物系统中自由基的发现为研究与许多疾病的发展和进展有关的各种病理过程提供了“起点”。从这一刻起,关于自由基和自由基过程参与心血管发病机理的知识的丰富,神经退行性疾病,和内分泌疾病,炎症条件,和感染,包括COVID-19,呈指数级增长。过度的炎症反应和异常的活性氧(ROS)水平可能会破坏线粒体动力学,增加细胞损伤的风险。此外,低血清白蛋白水平和还原白蛋白和氧化白蛋白之间正常生理平衡的变化可能是身体抗氧化能力受损的严重先决条件,患者病情恶化。本文综述了氧化应激之间的相互关系,炎症,白蛋白水平低,这是COVID-19的标志。
    Oxidative stress is a major source of ROS-mediated damage to macromolecules, tissues, and the whole body. It is an important marker in the severe picture of pathological conditions. The discovery of free radicals in biological systems gives a \"start\" to studying various pathological processes related to the development and progression of many diseases. From this moment on, the enrichment of knowledge about the participation of free radicals and free-radical processes in the pathogenesis of cardiovascular, neurodegenerative, and endocrine diseases, inflammatory conditions, and infections, including COVID-19, is increasing exponentially. Excessive inflammatory responses and abnormal reactive oxygen species (ROS) levels may disrupt mitochondrial dynamics, increasing the risk of cell damage. In addition, low serum albumin levels and changes in the normal physiological balance between reduced and oxidized albumin can be a serious prerequisite for impaired antioxidant capacity of the body, worsening the condition in patients. This review presents the interrelationship between oxidative stress, inflammation, and low albumin levels, which are hallmarks of COVID-19.
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  • 文章类型: Journal Article
    血红素合成酶AhbD催化西罗血红素依赖性血红素生物合成途径的最后一步,在古细菌和硫酸盐还原细菌中有效。AhbD催化的反应由铁卟啉III的两个丙酸酯侧链氧化脱羧到血红素b的相应乙烯基。AhbD是一种自由基SAM酶,采用自由基化学来实现脱羧反应。以前,有人提出,底物铁卟啉III的中心铁离子通过使电子从最初形成的底物自由基转移到AhbD中的铁硫簇来参与反应。在这项研究中,我们研究了AhbD催化过程中形成的底物自由基。虽然通过电子顺磁共振(EPR)光谱未检测到铁-总菌基自由基,通过使用诸如卟啉III和锌卟啉III之类的底物类似物,可以成功地捕获和可视化底物自由基。通过基于密度泛函理论(DFT)计算的模拟来分析通过EPR检测的自由基信号。在底物类似物上观察到的自由基物质表明,氢原子的夺取发生在丙酸酯侧链的β-位置,并且给电子配体位于卟啉的中心金属离子附近。
    The heme synthase AhbD catalyzes the last step of the siroheme-dependent heme biosynthesis pathway, which is operative in archaea and sulfate-reducing bacteria. The AhbD-catalyzed reaction consists of the oxidative decarboxylation of two propionate side chains of iron-coproporphyrin III to the corresponding vinyl groups of heme b. AhbD is a Radical SAM enzyme employing radical chemistry to achieve the decarboxylation reaction. Previously, it was proposed that the central iron ion of the substrate iron-coproporphyrin III participates in the reaction by enabling electron transfer from the initially formed substrate radical to an iron-sulfur cluster in AhbD. In this study, we investigated the substrate radical that is formed during AhbD catalysis. While the iron-coproporphyrinyl radical was not detected by electron paramagnetic resonance (EPR) spectroscopy, trapping and visualization of the substrate radical was successful by employing substrate analogs such as coproporphyrin III and zinc-coproporphyrin III. The radical signals detected by EPR were analyzed by simulations based on density functional theory (DFT) calculations. The observed radical species on the substrate analogs indicate that hydrogen atom abstraction takes place at the β-position of the propionate side chain and that an electron donating ligand is located in proximity to the central metal ion of the porphyrin.
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  • 文章类型: Journal Article
    氢化锌分子[{(ArNCMe)2CH}ZnH](Ar=2,6-二异丙基苯基)与0.5当量的反应。[Ni(CO)Cp]2导致含有桥接3个中心的镍-锌氢化物络合物的分离,2-电子Ni-H-Zn相互作用。该物种已通过单晶X射线衍射在固态下进行了表征。DFT计算与其作为σ络合物的公式一致,该σ络合物是由氢化锌与顺磁性镍(I)片段的配位得出的。连续波和脉冲EPR实验表明,该物种在溶液中不稳定,并表明该物种在溶液中不稳定。进一步的实验表明,在催化量的镍(I)前体存在下,锌-氢化物键可以与D2进行H/D交换或脱氢偶合以形成Zn-Zn键。在组合中,数据支持镍(I)中心的锌-氢化物键的活化和官能化。
    Reaction of a molecular zinc-hydride [{(ArNCMe)2CH}ZnH] (Ar = 2,6-di-isopropylphenyl) with 0.5 equiv. of [Ni(CO)Cp]2 led to the isolation of a nickel-zinc hydride complex containing a bridging 3-centre,2-electron Ni-H-Zn interaction. This species has been characterized in the solid-state by single crystal X-ray diffraction. DFT calculations are consistent with its formulation as a σ-complex derived from coordination of the zinc-hydride to a paramagnetic nickel(I) fragment. Continuous wave and pulse EPR experiments suggest that this species is not stable in solution and suggest that this species is labile in solution. Further experiments show that in the presence of catalytic quantities of nickel(I) precursors, zinc-hydride bonds can undergo either H/D-exchange with D2 or dehydrocoupling to form Zn-Zn bonds. In combination, the data support the activation and functionalisation of zinc-hydride bonds at nickel(I) centres.
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  • 文章类型: Journal Article
    硝基氧化物是稳定的有机自由基,具有非常长的寿命,这使它们独特地适合作为可观察的探针或极化剂,用于生物分子结构和动力学的光谱研究。用于生物应用的自由基探针的理想特征在于对还原降解的鲁棒性和有益的电子自旋弛豫参数。这些性质在很大程度上受到硝基氧支架的分子结构的影响,以及它喜欢采用的构象。在这项研究中,我们介绍了基于具有环外亚甲基取代基的螺环吡咯烷支架的第一种硝基氧化物的合成。通过X射线晶体学评估了这些氮氧化物所采用的构象,两者都具有单一的氮氧化物晶体,并且在微孔结晶海绵中包含氮氧化物。通过电子顺磁共振(EPR)光谱和循环伏安法(CV)研究了新氮氧化物对还原的动力学和热力学稳定性。结合EPR测量电子自旋弛豫特性,这些结果表明,这种新的氮氧化物家族可以提供获得多官能化探针和极化剂的途径,适用于高温下的生物环境。
    Nitroxides are stable organic radicals with exceptionally long lifetimes, which render them uniquely suitable as observable probes or polarising agents for spectroscopic investigation of biomolecular structure and dynamics. Radical-based probes for biological applications are ideally characterized by both robustness towards reductive degradation and beneficial electron spin relaxation parameters. These properties are largely influenced by the molecular structure of the nitroxide scaffold, and also by the conformations it prefers to adopt. In this study we present the synthesis of the first nitroxides based on a spirocyclic pyrrolidine scaffold with an exocyclic methylene substituent. The conformations adopted by these nitroxides were evaluated by X-ray crystallography, both with single nitroxide crystals and by inclusion of nitroxides in a microporous crystalline sponge. The kinetic and thermodynamic stability of the new nitroxides towards reduction was investigated by electron paramagnetic resonance (EPR) spectroscopy and cyclic voltammetry (CV). In combination with EPR measurements of electron spin relaxation properties, these results suggest that this new family of nitroxides can provide access to multifunctionalized probes and polarising agents suitable for use in biological environments at elevated temperatures.
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  • 文章类型: Journal Article
    卵清蛋白(OVA),一种对鸡胚营养至关重要的蛋白质,水合作用,和抗菌保护,与其他蛋清蛋白一起,迁移到羊水,并在胚胎发生期间被胚胎口服吸收。最近,研究表明,为了获得最佳的蛋壳质量,母鸡的饮食可以补充锰。虽然对胚胎发育至关重要,锰过量会导致神经毒性。这项研究调查了OVA是否可能参与锰水平的调节。使用电子顺磁共振(EPR)光谱研究了Mn(II)与OVA的结合。结果表明,OVA结合最多两个Mn(II)离子,亲和力稍弱的人,即使是多余的10倍,这表明它可能对Mn(II)过载具有保护作用。似乎Mn(II)的结合,或过量Mn(II)的存在,不影响OVA的三级结构,从荧光和UV/vis测量证明。与牛和人血清白蛋白的比较分析表明,它们对Mn(II)的亲和力高于OVA,很可能是由于他们本质上不同的生理作用。这些发现表明OVA在锰的运输和储存中不起作用;然而,它可能参与保护胚胎免受锰诱导的毒性。
    Ovalbumin (OVA), a protein vital for chick embryo nutrition, hydration, and antimicrobial protection, together with other egg-white proteins, migrates to the amniotic fluid and is orally absorbed by the embryo during embryogenesis. Recently, it has been shown that for optimal eggshell quality, the hen diet can be supplemented with manganese. Although essential for embryonic development, manganese in excess causes neurotoxicity. This study investigates whether OVA may be involved in the regulation of manganese levels. The binding of Mn(II) to OVA was investigated using electron paramagnetic resonance (EPR) spectroscopy. The results show that OVA binds a maximum of two Mn(II) ions, one with slightly weaker affinity, even in a 10-fold excess, suggesting it may have a protective role from Mn(II) overload. It seems that the binding of Mn(II), or the presence of excess Mn(II), does not affect OVA\'s tertiary structure, as evidenced from fluorescence and UV/vis measurements. Comparative analysis with bovine and human serum albumins revealed that they exhibit higher affinities for Mn(II) than OVA, most likely due to their essentially different physiological roles. These findings suggest that OVA does not play a role in the transport and storage of manganese; however, it may be involved in embryo protection from manganese-induced toxicity.
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