Disease identification

疾病鉴定
  • 文章类型: Journal Article
    骨关节炎(OA)是一种非常普遍的全球肌肉骨骼疾病,膝关节OA(KOA)占全球病例的五分之四。这是一种严重影响生活质量的退行性疾病。因此,它通过不同的方法进行管理,比如减肥,物理治疗,和膝关节置换术.物理疗法旨在加强膝关节周围肌肉,以改善关节稳定性。
    记录了56名成年人的Pedobarography数据以及骨盆和躯干运动。其中,28名受试者是健康的,28名受试者患有不同程度的KOA。年龄,性别,BMI,记录的变量一起使用机器学习(ML)模型识别KOA受试者,即,逻辑回归,SVM,决策树,和随机森林。表面肌电图(sEMG)信号也从两个肌肉两侧记录,股直肌和股二头肌股长肌,在两名健康受试者和六名KOA受试者的各种活动中进行双边活动。然后使用从时间序列特征获得的主成分进行聚类分析,频率特征,和时频特征。
    使用足动脉造影数据以及骨盆和躯干运动以89.3%和85.7%的最高准确度和灵敏度成功识别了KOA,分别,使用决策树分类器。此外,sEMG数据已成功用于将健康受试者与KOA受试者进行聚类,具有小波分析功能,为不同条件下的站立活动提供最佳性能。
    使用与膝盖不直接相关的步态变量检测KOA,如pedobarography测量和骨盆和躯干运动捕获的pedobarography垫和可穿戴传感器,分别。KOA受试者还通过使用来自行走和站立期间的膝关节周围肌肉的sEMG数据的聚类分析与健康个体区分开。步态数据和sEMG相互补充,协助KOA识别和康复监测。这很重要,因为可穿戴传感器简化了数据收集,需要最少的样品制备,并提供非射线照相,适用于实验室和现实世界场景的安全方法。决策树分类器,用分层k折交叉验证(SKCV)数据训练,观察到使用步态数据进行KOA识别是最佳的。
    UNASSIGNED: Osteoarthritis (OA) is a highly prevalent global musculoskeletal disorder, and knee OA (KOA) accounts for four-fifths of the cases worldwide. It is a degenerative disorder that greatly affects the quality of life. Thus, it is managed through different methods, such as weight loss, physical therapy, and knee arthroplasty. Physical therapy aims to strengthen the knee periarticular muscles to improve joint stability.
    UNASSIGNED: Pedobarographic data and pelvis and trunk motion of 56 adults are recorded. Among them, 28 subjects were healthy, and 28 subjects were suffering from varying degrees of KOA. Age, sex, BMI, and the recorded variables are used together to identify subjects with KOA using machine learning (ML) models, namely, logistic regression, SVM, decision tree, and random forest. Surface electromyography (sEMG) signals are also recorded bilaterally from two muscles, the rectus femoris and biceps femoris caput longus, bilaterally during various activities for two healthy and six KOA subjects. Cluster analysis is then performed using the principal components obtained from time-series features, frequency features, and time-frequency features.
    UNASSIGNED: KOA is successfully identified using the pedobarographic data and the pelvis and trunk motion with the highest accuracy and sensitivity of 89.3% and 85.7%, respectively, using a decision tree classifier. In addition, sEMG data have been successfully used to cluster healthy subjects from KOA subjects, with wavelet analysis features providing the best performance for the standing activity under different conditions.
    UNASSIGNED: KOA is detected using gait variables not directly related to the knee, such as pedobarographic measurements and pelvis and trunk motion captured by pedobarography mats and wearable sensors, respectively. KOA subjects are also distinguished from healthy individuals through clustering analysis using sEMG data from knee periarticular muscles during walking and standing. Gait data and sEMG complement each other, aiding in KOA identification and rehabilitation monitoring. It is important because wearable sensors simplify data collection, require minimal sample preparation, and offer a non-radiographic, safe method suitable for both laboratory and real-world scenarios. The decision tree classifier, trained with stratified k-fold cross validation (SKCV) data, is observed to be the best for KOA identification using gait data.
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  • 文章类型: Journal Article
    背景:随着深度学习网络技术的飞速发展,面部识别技术在医疗领域的应用日益受到重视。
    目的:本研究旨在系统回顾近十年来基于深度学习网络的面部识别技术在罕见畸形和面瘫诊断中的文献,除其他条件外,确定该技术在疾病识别中的有效性和适用性。
    方法:本研究遵循系统评价和荟萃分析的首选报告项目进行文献检索,并从多个数据库中检索相关文献。包括PubMed,2023年12月31日搜索关键词包括深度学习卷积神经网络,面部识别,疾病识别。共筛选了近10年来基于深度学习网络的人脸识别技术在疾病诊断中的相关文章208篇,选择22篇文章进行分析。Meta分析采用Stata14.0软件进行。
    结果:该研究收集了22篇文章,总样本量为57539例,其中43301个是患有各种疾病的样本。荟萃分析结果表明,深度学习在面部识别中用于疾病诊断的准确率为91.0%[95%CI(87.0%,95.0%)]。
    结论:研究结果表明,基于深度学习网络的面部识别技术在疾病诊断中具有较高的准确性,为该技术的进一步发展和应用提供参考。
    BACKGROUND: With the rapid advancement of deep learning network technology, the application of facial recognition technology in the medical field has received increasing attention.
    OBJECTIVE: This study aims to systematically review the literature of the past decade on facial recognition technology based on deep learning networks in the diagnosis of rare dysmorphic diseases and facial paralysis, among other conditions, to determine the effectiveness and applicability of this technology in disease identification.
    METHODS: This study followed the Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines for literature search and retrieved relevant literature from multiple databases, including PubMed, on 31 December 2023. The search keywords included deep learning convolutional neural networks, facial recognition, and disease recognition. A total of 208 articles on facial recognition technology based on deep learning networks in disease diagnosis over the past 10 years were screened, and 22 articles were selected for analysis. The meta-analysis was conducted using Stata 14.0 software.
    RESULTS: The study collected 22 articles with a total sample size of 57 539 cases, of which 43 301 were samples with various diseases. The meta-analysis results indicated that the accuracy of deep learning in facial recognition for disease diagnosis was 91.0% [95% CI (87.0%, 95.0%)].
    CONCLUSIONS: The study results suggested that facial recognition technology based on deep learning networks has high accuracy in disease diagnosis, providing a reference for further development and application of this technology.
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  • 文章类型: Journal Article
    背景:如果农民不及时识别和管理,作物疾病会导致严重的产量损失和粮食短缺。随着卷积神经网络(CNN)的进步和智能手机的普及,作物病害的自动化和准确识别已成为可行。然而,尽管先前的研究在实验室条件(Lab)下使用多种作物的混合数据集实现了高精度(>95%),这些模型在现场条件(Field)下部署时通常会出错。在这项研究中,我们的目标是在实验室下评估疾病识别的准确性,字段,和混合(实验室和现场)条件,使用包含14种苹果疾病(Malus×domesticaBorkh。),马铃薯(马铃薯),和番茄(SolanumlycopersicumL.)。此外,我们研究了模型架构的影响,参数大小,和作物特定模型(CSM)的准确性,使用DenseNets,ResNets,MobileNetV3,EfficientNet,和VGG网。
    结果:我们的结果显示,从实验室(98.22%)到混合(91.76%)再到现场(71.55%),所有模型的准确性都有所下降。有趣的是,疾病分类准确性显示出模型架构和参数大小之间的最小变化:Lab(97.61-98.76%),混合(90.76-92.31%),和字段(68.56-73.81%)。尽管发现CSM可以减少作物间病害的错误分类,它们还导致作物内部错误分类的轻微增加。
    结论:我们的发现强调了丰富数据表示和卷相对于采用新模型架构的重要性。此外,强调了对更多特定领域图像的需求。最终,这些见解有助于推进作物病害识别应用,促进其在农民领域的实际实施。©2024化学工业学会。
    BACKGROUND: Crop diseases can lead to significant yield losses and food shortages if not promptly identified and managed by farmers. With the advancements in convolutional neural networks (CNN) and the widespread availability of smartphones, automated and accurate identification of crop diseases has become feasible. However, although previous studies have achieved high accuracy (>95%) under laboratory conditions (Lab) using mixed data sets of multiple crops, these models often falter when deployed under field conditions (Field). In this study, we aimed to evaluate disease identification accuracy under Lab, Field, and Mixed (Lab and Field) conditions using an assembled data set encompassing 14 diseases of apple (Malus × domestica Borkh.), potato (Solanum tuberosum L.), and tomato (Solanum lycopersicum L.). In addition, we investigated the impact of model architectures, parameter sizes, and crop-specific models (CSMs) on accuracy, using DenseNets, ResNets, MobileNetV3, EfficientNet, and VGG Nets.
    RESULTS: Our results revealed a decrease in accuracy across all models from Lab (98.22%) to Mixed (91.76%) to Field (71.55%) conditions. Interestingly, disease classification accuracy showed minimal variation across model architectures and parameter sizes: Lab (97.61-98.76%), Mixed (90.76-92.31%), and Field (68.56-73.81%). Although CSMs were found to reduce inter-crop disease misclassifications, they also led to a slight increase in intra-crop misclassifications.
    CONCLUSIONS: Our findings underscore the importance of enriching data representation and volumes over employing new model architectures. Furthermore, the need for more field-specific images was highlighted. Ultimately, these insights contribute to the advancement of crop disease identification applications, facilitating their practical implementation in farmer\'s fields. © 2024 Society of Chemical Industry.
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  • 文章类型: Journal Article
    木瓜,以其营养益处而闻名,代表一种高利润的作物。然而,它容易受到各种疾病的影响,这些疾病会严重影响水果的产量和质量。其中,叶部病害构成重大威胁,严重影响木瓜植物的生长。因此,木瓜农民经常遇到许多挑战和财务挫折。为方便木瓜叶部病害的简便高效鉴定,已经收集了一个全面的数据集。这个数据集,包括大约1400张患病的图像,感染,和健康的叶子,旨在加强对这些疾病如何影响木瓜植物的理解。图像,从不同地区和不同天气条件下精心收集,提供有关木瓜叶特有的疾病模式的详细见解。已经采取了严格的措施来确保数据集的质量并提高其实用性。图像,从多个角度捕获和拥有高分辨率的设计,以帮助在一个高度精确的模型的发展。此外,RGB模式已被用来精心捕捉每个细节,确保叶子的完美表现。该数据集精心识别并分类了五种主要类型的叶片疾病:叶片卷曲(包括其初始阶段),木瓜马赛克,环斑,螨(特别是,受红蜘蛛螨影响的人),还有Mealybug.这些疾病因其对木瓜植物的叶片和整个果实生产的有害影响而被认识到。通过利用这个精选的数据集,可以训练实时检测叶片病害的模型,大大有助于及时识别这些条件。
    Papaya, renowned for its nutritional benefits, represents a highly profitable crop. However, it is susceptible to various diseases that can significantly impede fruit productivity and quality. Among these, leaf diseases pose a substantial threat, severely impacting the growth of papaya plants. Consequently, papaya farmers frequently encounter numerous challenges and financial setbacks. To facilitate the easy and efficient identification of papaya leaf diseases, a comprehensive dataset has been assembled. This dataset, comprising approximately 1400 images of diseased, infected, and healthy leaves, aims to enhance the understanding of how these ailments affect papaya plants. The images, meticulously collected from diverse regions and under varying weather conditions, offer detailed insights into the disease patterns specific to papaya leaves. Stringent measures have been taken to ensure the dataset\'s quality and enhance its utility. The images, captured from multiple angles and boasting high resolution are designed to aid in the development of a highly accurate model. Additionally, RGB mode has been employed to meticulously capture each detail, ensuring a flawless representation of the leaves. The dataset meticulously identifies and categorizes five primary types of leaf diseases: Leaf Curl (inclusive of its initial stage), Papaya Mosaic, Ring Spot, Mites (specifically, those affected by Red Spider Mites), and Mealybug. These diseases are recognized for their detrimental effects on both the leaves and the overall fruit production of the papaya plant. By leveraging this curated dataset, it is possible to train a model for the real-time detection of leaf diseases, significantly aiding in the timely identification of such conditions.
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  • 文章类型: Editorial
    暂无摘要。
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  • 文章类型: Journal Article
    鱼类健康管理对水产养殖和渔业至关重要,因为它直接影响可持续性和生产力。由于免疫学和分子诊断工具的进步,鱼类疾病诊断已经迈出了一大步,快,以及识别疾病的准确手段。这篇综述概述了用于确定鱼类健康的主要分子和免疫学诊断方法。免疫学技术通过检测特定的抗原和抗体来帮助诊断不同的鱼类疾病。本文还研究了免疫学技术在疫苗开发中的应用。通过分子诊断技术使病原体的遗传鉴定成为可能,该技术能够精确鉴定细菌,病毒,和寄生生物,除了评估宿主反应和与疾病抗性相关的遗传变异。分子和免疫学方法的结合导致了对鱼类健康进行全面评估的新技术的创造。这些发展改善了治疗措施,病原体鉴定,并提供有关影响鱼类健康的变量的新信息,如遗传易感性和环境压力。在可持续养鱼和渔业管理的框架内,本文重点介绍了这些诊断技术的重要性,这些技术在保护鱼类种群和水生栖息地方面发挥着至关重要的作用。这篇综述还探讨了鱼类健康中免疫和分子诊断技术的当前和潜在的未来方向。
    Fish health management is critical to aquaculture and fisheries as it directly affects sustainability and productivity. Fish disease diagnosis has taken a massive stride because of advances in immunological and molecular diagnostic tools which provide a sensitive, quick, and accurate means of identifying diseases. This review presents an overview of the main molecular and immunological diagnostic methods for determining the health of fish. The immunological techniques help to diagnose different fish diseases by detecting specific antigens and antibodies. The application of immunological techniques to vaccine development is also examined in this review. The genetic identification of pathogens is made possible by molecular diagnostic techniques that enable the precise identification of bacterial, viral, and parasitic organisms in addition to evaluating host reactions and genetic variation associated with resistance to disease. The combination of molecular and immunological methods has resulted in the creation of novel techniques for thorough evaluation of fish health. These developments improve treatment measures, pathogen identification and provide new information about the variables affecting fish health, such as genetic predispositions and environmental stresses. In the framework of sustainable fish farming and fisheries management, this paper focuses on the importance of these diagnostic techniques that play a crucial role in protecting fish populations and the aquatic habitats. This review also examines the present and potential future directions in immunological and molecular diagnostic techniques in fish health.
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  • 文章类型: Journal Article
    Sphaerphysasalsula(鲍尔。)DC。,也被称为杨廖宝,属于豆科,是Sphaerphysa属中唯一存在的物种。S.salsula对寒冷有耐受性,高盐,和碱性土壤,它在中国作为饲料作物广泛种植,并用作治疗高血压的中医(Ma等人。,2002).2023年,在Tumdleft种植的S.salsula上发现了类似白粉病的体征和症状(40.515°N,110.424°E),包头市,内蒙古自治区,中国。白色粉状物质覆盖了90%的叶面积,受感染的植物表现出微弱的生长和衰老。超过80%的植物(n=200)具有这些白粉病样症状。菌丝是孤立的,分生孢子有很少的分枝和隔片。分生孢子是圆柱形的,长25-32μm,宽8-15μm(n=30),分生孢子形成单个根尖下胚芽管,直到弯曲弯曲,具膨大的先端或明显浅裂的分生孢子贴壁。基于这些形态特征,该真菌被初步鉴定为Erysiphesp。(施密特和布劳恩2020)。从病叶中分离出真菌结构,使用Zhu等人描述的方法提取病原体的基因组DNA。(2022年)。使用引物PMITS1/PMITS2(Cunnington等人。2003)和Invitrogen(上海,中国)。白粉病菌株,名为KMD(GenBank登录号:PP267067),与黄芪的同一性为100%(645/645bp),在Golestan的黄芪上报道了白粉病,伊朗(GenBank:OP806834)和99.6%(643/645bp)与ErysipheAstragali(GenBank:MW142495),在内蒙古的一个白粉病上报告了一个白粉病,中国(Sun等人。2023年)。通过将感染的S.salsula叶片上的分生孢子刷到四种健康植物的叶片上进行致病性测试。而四个对照植物以相同的方式刷洗。将所有处理过的植物置于保持在19°C和65%湿度的单独生长室中。具有16小时光照/8小时黑暗光周期。接种九天后,处理过的植物表现出白粉病症状,而对照植物保持无症状。两次重复致病性实验获得了相同的结果。通过形态学和分子分析,对白粉病菌进行了重新分离,鉴定为黄芪,从而实现了科赫的假设。以前没有发现关于在S.salsula植物上发生白粉病的报道。这种破坏性白粉病的发生可能会对S.salsula的培养产生不利影响。鉴定白粉病的病原体将支持未来在S.salsula上控制和管理白粉病的努力。
    Sphaerophysa salsula (Pall.) DC., also known as Yang Liao Pao, belongs to the Leguminosae family and is the only existing species in the Sphaerophysa genus. S. salsula is tolerance to cold, high salt, and alkaline soil, it is widely cultivated in China as a forage crop, and used as a Chinese folk medicine to treat hypertension (Ma et al., 2002). In 2023, signs and symptoms similar to powdery mildew were found on S. salsula planted in Tumd left (40.515°N, 110.424°E), Baotou City, Inner Mongolia Autonomous Region, China. The white powdery substance covered 90% of the leaf area, and the infected plants showed weak growth and senescence. More than 80% of plants (n=200) had these powdery mildew-like symptoms. Hyphal appressoria are solitary, conidiophores have few branches and septa. Conidia are cylindrical to clavate, 25-32 μm long and 8-15 μm wide (n=30), conidia form single subapical germ tubes, straight to curved-sinuous, with swollen apex or distinctly lobed conidial appressorium. Based on these morphological characteristics, the fungus was tentatively identified as an Erysiphe sp. (Schmidt and Braun 2020). Fungal structures were isolated from diseased leaves, and genomic DNA of the pathogen was extracted using the method described by Zhu et al. (2022). The internal transcribed spacer (ITS) region was amplified by PCR using the primers PMITS1/PMITS2 (Cunnington et al. 2003) and the amplicon sequenced by Invitrogen (Shanghai, China). The powdery mildew strain, named as KMD (GenBank accession no.: PP267067), showed an identity of 100% (645/645bp) with Erysiphe astragali, a powdery mildew reported on Astragalus glycyphyllos in Golestan, Iran (GenBank: OP806834) and identity of 99.6% (643/645bp) with Erysiphe astragali (GenBank: MW142495), a powdery mildew reported on A. scaberrimus in Inner Mongolia, China (Sun et al. 2023). Pathogenicity tests were conducted by brushing the conidia from infected S. salsula leaves onto leaves of four healthy plants, while four control plants were brushed in the same manner. All the treated plants were placed in separate growth chambers maintained at 19°C and 65% humidity, with a 16 h light/8 h dark photoperiod. Nine days after inoculation, the treated plants showed powdery mildew symptoms, while the control plants remained asymptomatic. The same results were obtained for two repeated pathogenicity experiments. The powdery mildew fungus was reisolated and identified as E. astragali based on morphological and molecular analysis, thereby fulfilling Koch\'s postulates. No report on the occurrence of powdery mildew on S. salsula plants has been found previously. The occurrence of this destructive powdery mildew may adversely affect the cultivation of S. salsula. Identifying the pathogen of powdery mildew will support future efforts to control and manage powdery mildew on S. salsula.
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  • 文章类型: Journal Article
    番茄叶部病害种类繁多,病因复杂,基于卷积神经网络的方法是有效的。虽然在应用该方法提取图像特征时,捕获关键特征或倾向于丢失大量特征具有挑战性,导致疾病识别的准确性低。因此,本文提出了ResNet50-DPA模型来识别番茄叶片病害。首先,改进的ResNet50包含在模型中,它将基本ResNet50模型中的第一层卷积替换为级联atrous卷积,有利于获得不同尺度的叶片特征。其次,在模型中,提出了一种双路径注意力(DPA)机制来搜索关键特征,其中随机池化用于消除非最大值的影响,并引入两个一维卷积来代替MLP层,以有效减少对叶片信息的破坏。此外,为了快速准确地识别叶片病害的类型,将DPA模块整合到改进的ResNet50的残差模块中,以获得增强的番茄叶片特征图,这有助于减少经济损失。最后,给出了Grad-CAM的可视化结果表明,所提出的ResNet50-DPA模型可以更准确地识别疾病,提高模型的可解释性,满足番茄叶部病害精确识别的需要。
    Tomato leaf disease identification is difficult owing to the variety of diseases and complex causes, for which the method based on the convolutional neural network is effective. While it is challenging to capture key features or tends to lose a large number of features when extracting image features by applying this method, resulting in low accuracy of disease identification. Therefore, the ResNet50-DPA model is proposed to identify tomato leaf diseases in the paper. Firstly, an improved ResNet50 is included in the model, which replaces the first layer of convolution in the basic ResNet50 model with the cascaded atrous convolution, facilitating to obtaining of leaf features with different scales. Secondly, in the model, a dual-path attention (DPA) mechanism is proposed to search for key features, where the stochastic pooling is employed to eliminate the influence of non-maximum values, and two convolutions with one dimension are introduced to replace the MLP layer for effectively reducing the damage to leaf information. In addition, to quickly and accurately identify the type of leaf disease, the DPA module is incorporated into the residual module of the improved ResNet50 to obtain an enhanced tomato leaf feature map, which helps to reduce economic losses. Finally, the visualization results of Grad-CAM are presented to show that the ResNet50-DPA model proposed can identify diseases more accurately and improve the interpretability of the model, meeting the need for precise identification of tomato leaf diseases.
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  • 文章类型: Journal Article
    背景:自然语言处理(NLP)模型,例如来自变压器(BERT)的双向编码器表示,通过潜在地提高效率和准确性,有望彻底改变来自电子健康记录(EHR)的疾病识别。然而,它们在实践环境中的实际应用需要一种全面和多学科的方法来开发和验证。COVID-19大流行强调了由于测试可用性有限以及处理非结构化数据方面的挑战而在疾病识别方面面临的挑战。在荷兰,全科医生(GP)是医疗保健的第一联系点,这些初级保健提供者生成的EHR包含大量潜在有价值的信息。尽管如此,EHR中自由文本条目的非结构化性质在识别趋势方面提出了挑战,检测疾病爆发,或准确定位COVID-19病例。
    目的:本研究旨在开发和验证BERT模型,用于检测荷兰一般实践EHR中的COVID-19咨询。
    方法:BERT模型最初是在荷兰语数据上进行预训练的,并使用包括确认的COVID-19GP咨询和非COVID-19相关咨询的全面EHR数据集进行了微调。数据集被划分为训练和开发集,并在一个独立的测试集上评估模型的性能,该测试集作为其在COVID-19检测中有效性的主要衡量标准。为了验证最终模型,通过3种方法评估了其性能。首先,对来自荷兰不同地理区域的EHR数据集进行了外部验证.第二,使用从市政卫生服务获得的聚合酶链反应(PCR)测试数据的结果进行验证。最后,评估了荷兰预测结局与COVID-19相关住院率之间的相关性,涵盖了荷兰大流行爆发前后的时期,也就是说,在广泛测试之前的时期。
    结果:模型开发使用了300,359个GP咨询。我们为COVID-19会诊开发了一个高度准确的模型(准确度0.97,F1得分0.90,精确度0.85,召回率0.85,特异性0.99)。外部验证显示出相当高的性能。对PCR检测数据的验证显示召回率高,但精确度和特异性低。使用医院数据进行的验证显示,该模型的COVID-19预测与COVID-19相关的住院率之间存在显着相关性(F1评分96.8;P<.001;R2=0.69)。最重要的是,该模型能够在荷兰首例确诊病例出现前几周预测COVID-19病例.
    结论:开发的BERT模型能够在确诊病例之前的全科医生咨询中准确识别COVID-19病例。我们的BERT模型的验证功效突出了NLP模型早期识别疾病爆发的潜力,体现了多学科努力利用技术进行疾病识别的力量。此外,这项研究的意义超越了COVID-19,为早期识别各种疾病提供了蓝图,揭示了这样的模型可以彻底改变疾病监测。
    Natural language processing (NLP) models such as bidirectional encoder representations from transformers (BERT) hold promise in revolutionizing disease identification from electronic health records (EHRs) by potentially enhancing efficiency and accuracy. However, their practical application in practice settings demands a comprehensive and multidisciplinary approach to development and validation. The COVID-19 pandemic highlighted challenges in disease identification due to limited testing availability and challenges in handling unstructured data. In the Netherlands, where general practitioners (GPs) serve as the first point of contact for health care, EHRs generated by these primary care providers contain a wealth of potentially valuable information. Nonetheless, the unstructured nature of free-text entries in EHRs poses challenges in identifying trends, detecting disease outbreaks, or accurately pinpointing COVID-19 cases.
    This study aims to develop and validate a BERT model for detecting COVID-19 consultations in general practice EHRs in the Netherlands.
    The BERT model was initially pretrained on Dutch language data and fine-tuned using a comprehensive EHR data set comprising confirmed COVID-19 GP consultations and non-COVID-19-related consultations. The data set was partitioned into a training and development set, and the model\'s performance was evaluated on an independent test set that served as the primary measure of its effectiveness in COVID-19 detection. To validate the final model, its performance was assessed through 3 approaches. First, external validation was applied on an EHR data set from a different geographic region in the Netherlands. Second, validation was conducted using results of polymerase chain reaction (PCR) test data obtained from municipal health services. Lastly, correlation between predicted outcomes and COVID-19-related hospitalizations in the Netherlands was assessed, encompassing the period around the outbreak of the pandemic in the Netherlands, that is, the period before widespread testing.
    The model development used 300,359 GP consultations. We developed a highly accurate model for COVID-19 consultations (accuracy 0.97, F1-score 0.90, precision 0.85, recall 0.85, specificity 0.99). External validations showed comparable high performance. Validation on PCR test data showed high recall but low precision and specificity. Validation using hospital data showed significant correlation between COVID-19 predictions of the model and COVID-19-related hospitalizations (F1-score 96.8; P<.001; R2=0.69). Most importantly, the model was able to predict COVID-19 cases weeks before the first confirmed case in the Netherlands.
    The developed BERT model was able to accurately identify COVID-19 cases among GP consultations even preceding confirmed cases. The validated efficacy of our BERT model highlights the potential of NLP models to identify disease outbreaks early, exemplifying the power of multidisciplinary efforts in harnessing technology for disease identification. Moreover, the implications of this study extend beyond COVID-19 and offer a blueprint for the early recognition of various illnesses, revealing that such models could revolutionize disease surveillance.
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  • 文章类型: Journal Article
    物联网(IoT)在农业中具有重要意义,利用遥感和机器学习帮助农民做出高精度的管理决策。这项技术可以应用于葡萄栽培,使监测疾病发生并自动预防成为可能。本研究旨在实现一种智能葡萄病害检测方法,使用收集环境和植物相关数据的物联网传感器网络。这项研究的重点是确定提供有关葡萄树健康的早期信息的主要参数。传感器网络的概述,architecture,并提供了组件。物联网传感器系统部署在位于Murfatlar的葡萄栽培和Enology研究站(SDV)种植园内的实验区中,罗马尼亚。用于疾病识别的经典方法也应用于该领域,为了将它们与传感器数据进行比较,从而改进了葡萄病害识别算法。使用机器学习(ML)算法分析来自传感器的数据,并将其与使用经典方法获得的结果相关联,以识别和预测葡萄树疾病。疾病发生的结果与相应的环境参数一起显示。分类系统的错误,使用前馈神经网络,为0.05。这项研究将继续进行,从位于其他地区的葡萄园中测试的物联网传感器获得的结果。
    The Internet of Things (IoT) has gained significance in agriculture, using remote sensing and machine learning to help farmers make high-precision management decisions. This technology can be applied in viticulture, making it possible to monitor disease occurrence and prevent them automatically. The study aims to achieve an intelligent grapevine disease detection method, using an IoT sensor network that collects environmental and plant-related data. The focus of this study is the identification of the main parameters which provide early information regarding the grapevine\'s health. An overview of the sensor network, architecture, and components is provided in this paper. The IoT sensors system is deployed in the experimental plots located within the plantations of the Research Station for Viticulture and Enology (SDV) in Murfatlar, Romania. Classical methods for disease identification are applied in the field as well, in order to compare them with the sensor data, thus improving the algorithm for grapevine disease identification. The data from the sensors are analyzed using Machine Learning (ML) algorithms and correlated with the results obtained using classical methods in order to identify and predict grapevine diseases. The results of the disease occurrence are presented along with the corresponding environmental parameters. The error of the classification system, which uses a feedforward neural network, is 0.05. This study will be continued with the results obtained from the IoT sensors tested in vineyards located in other regions.
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