DISNET knowledge base

DISNET 知识库
  • 文章类型: Journal Article
    近年来,药物的再利用受到了许多人的关注。将现有药物重新用于新的治疗用途的做法有助于简化药物发现过程,这反过来降低了与从头发展相关的成本和风险。以图的形式表示生物医学数据是描述信息的基础结构的一种简单有效的方法。使用深度神经网络结合这些数据代表了解决药物再利用的有希望的方法。本文提出了一个更全面的重定向模型,这是以前提出的。这两个版本都利用DISNET生物医学图作为主要的信息来源,为模型提供广泛而复杂的数据,以应对药物再利用的挑战。此新版本的RepoDB测试中报告的度量结果为AUROC为0.9604,AUPRC为0.9518。此外,讨论了一些新的预测,以证明模型的可靠性。作者认为,BEHOR有望产生药物再利用的假设,并可能大大有利于该领域。
    Drug repurposing has gained the attention of many in the recent years. The practice of repurposing existing drugs for new therapeutic uses helps to simplify the drug discovery process, which in turn reduces the costs and risks that are associated with de novo development. Representing biomedical data in the form of a graph is a simple and effective method to depict the underlying structure of the information. Using deep neural networks in combination with this data represents a promising approach to address drug repurposing. This paper presents BEHOR a more comprehensive version of the REDIRECTION model, which was previously presented. Both versions utilize the DISNET biomedical graph as the primary source of information, providing the model with extensive and intricate data to tackle the drug repurposing challenge. This new version\'s results for the reported metrics in the RepoDB test are 0.9604 for AUROC and 0.9518 for AUPRC. Additionally, a discussion is provided regarding some of the novel predictions to demonstrate the reliability of the model. The authors believe that BEHOR holds promise for generating drug repurposing hypotheses and could greatly benefit the field.
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  • 文章类型: Journal Article
    罕见病是世界人口中的一组罕见疾病。迄今为止,已经记录了大约7000种罕见疾病。然而,他们中的大多数没有已知的治疗方法。由于他们的稀缺流行导致对他们的治疗需求相对较低,制药业没有充分鼓励研究开发治疗它们的药物。这项工作旨在分析这种疾病的潜在药物重新定位策略。药物重新定位旨在为现有药物寻找新的用途。在这种情况下,它试图发现罕见疾病是否可以用以前用来治愈其他疾病的药物来治疗。我们的方法通过使用计算方法来计算罕见和非罕见疾病之间的相似性来解决这个问题。考虑到基因等生物学特征,蛋白质,和症状。重新定位的候选药物将根据科学文献中的临床试验进行检查。在这项研究中,已经选择了13种不同的罕见疾病,可以重新定位潜在的药物。通过在科学文献中验证这些药物,在研究的75%的罕见疾病中发现了成功的病例。检查了罕见疾病的遗传关联和表型特征。此外,根据解剖治疗化学(ATC)代码对经过验证的药物进行分类,以突出显示有较高倾向于重新定位的类型.这些有希望的结果为该研究领域的进一步研究打开了大门。
    Rare diseases are a group of uncommon diseases in the world population. To date, about 7000 rare diseases have been documented. However, most of them do not have a known treatment. As a result of the relatively low demand for their treatments caused by their scarce prevalence, the pharmaceutical industry has not sufficiently encouraged the research to develop drugs to treat them. This work aims to analyse potential drug-repositioning strategies for this kind of disease. Drug repositioning seeks to find new uses for existing drugs. In this context, it seeks to discover if rare diseases could be treated with medicines previously indicated to heal other diseases. Our approaches tackle the problem by employing computational methods that calculate similarities between rare and non-rare diseases, considering biological features such as genes, proteins, and symptoms. Drug candidates for repositioning will be checked against clinical trials found in the scientific literature. In this study, 13 different rare diseases have been selected for which potential drugs could be repositioned. By verifying these drugs in the scientific literature, successful cases were found for 75% of the rare diseases studied. The genetic associations and phenotypical features of the rare diseases were examined. In addition, the verified drugs were classified according to the anatomical therapeutic chemical (ATC) code to highlight the types with a higher predisposition to be repositioned. These promising results open the door for further research in this field of study.
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  • 文章类型: Journal Article
    Drug repurposing has become a widely used strategy to accelerate the process of finding treatments. While classical de novo drug development involves high costs, risks, and time-consuming paths, drug repurposing allows to reuse already-existing and approved drugs for new indications. Numerous research has been carried out in this field, both in vitro and in silico. Computational drug repurposing methods make use of modern heterogeneous biomedical data to identify and prioritize new indications for old drugs. In the current paper, we present a new complete methodology to evaluate new potentially repurposable drugs based on disease-gene and disease-phenotype associations, identifying significant differences between repurposing and non-repurposing data. We have collected a set of known successful drug repurposing case studies from the literature and we have analysed their dissimilarities with other biomedical data not necessarily participating in repurposing processes. The information used has been obtained from the DISNET platform. We have performed three analyses (at the genetical, phenotypical, and categorization levels), to conclude that there is a statistically significant difference between actual repurposing-related information and non-repurposing data. The insights obtained could be relevant when suggesting new potential drug repurposing hypotheses.
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